HEADER HYDROLASE 19-AUG-16 5LRP TITLE MOPEIA VIRUS EXONUCLEASE DOMAIN COMPLEXED WITH MAGNESIUM COMPND MOL_ID: 1; COMPND 2 MOLECULE: NUCLEOPROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: EXONUCLEASE DOMAIN, UNP RESIDUES 365-570; COMPND 5 SYNONYM: NUCLEOCAPSID PROTEIN; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MOPEIA VIRUS AN20410; SOURCE 3 ORGANISM_TAXID: 300175; SOURCE 4 GENE: NP; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS MOPEIA VIRUS, EXONUCLEASE MAGNESIUM, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR E.L.YEKWA,J.KHOURIEH,B.CANARD,F.FERRON REVDAT 5 17-JAN-24 5LRP 1 REMARK REVDAT 4 17-MAR-21 5LRP 1 REMARK LINK REVDAT 3 30-AUG-17 5LRP 1 REMARK REVDAT 2 16-AUG-17 5LRP 1 JRNL REVDAT 1 05-JUL-17 5LRP 0 JRNL AUTH E.YEKWA,J.KHOURIEH,B.CANARD,N.PAPAGEORGIOU,F.FERRON JRNL TITL ACTIVITY INHIBITION AND CRYSTAL POLYMORPHISM INDUCED BY JRNL TITL 2 ACTIVE-SITE METAL SWAPPING. JRNL REF ACTA CRYSTALLOGR D STRUCT V. 73 641 2017 JRNL REF 2 BIOL JRNL REFN ISSN 2059-7983 JRNL PMID 28777079 JRNL DOI 10.1107/S205979831700866X REMARK 2 REMARK 2 RESOLUTION. 1.94 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.94 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.41 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 35224 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.197 REMARK 3 R VALUE (WORKING SET) : 0.195 REMARK 3 FREE R VALUE : 0.245 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.860 REMARK 3 FREE R VALUE TEST SET COUNT : 1712 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.4239 - 4.4427 1.00 2938 144 0.1651 0.2077 REMARK 3 2 4.4427 - 3.5267 1.00 2805 151 0.1670 0.2038 REMARK 3 3 3.5267 - 3.0810 1.00 2840 132 0.1981 0.2460 REMARK 3 4 3.0810 - 2.7994 1.00 2811 135 0.2168 0.2807 REMARK 3 5 2.7994 - 2.5987 1.00 2819 124 0.2247 0.3004 REMARK 3 6 2.5987 - 2.4455 1.00 2801 140 0.2167 0.2480 REMARK 3 7 2.4455 - 2.3231 1.00 2781 137 0.2068 0.2570 REMARK 3 8 2.3231 - 2.2219 1.00 2732 174 0.2118 0.2662 REMARK 3 9 2.2219 - 2.1364 0.99 2760 132 0.2249 0.2809 REMARK 3 10 2.1364 - 2.0627 0.99 2764 126 0.2275 0.2625 REMARK 3 11 2.0627 - 1.9982 0.99 2745 159 0.2402 0.3501 REMARK 3 12 1.9982 - 1.9411 0.98 2716 158 0.2331 0.2875 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.220 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.720 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 3420 REMARK 3 ANGLE : 1.223 4602 REMARK 3 CHIRALITY : 0.049 506 REMARK 3 PLANARITY : 0.006 605 REMARK 3 DIHEDRAL : 13.279 1338 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 365 THROUGH 511 ) REMARK 3 ORIGIN FOR THE GROUP (A): 59.0538 4.0997 187.8651 REMARK 3 T TENSOR REMARK 3 T11: 0.2226 T22: 0.1167 REMARK 3 T33: 0.1800 T12: 0.0785 REMARK 3 T13: 0.0122 T23: -0.0020 REMARK 3 L TENSOR REMARK 3 L11: 1.7987 L22: 0.5952 REMARK 3 L33: 2.1957 L12: 0.4942 REMARK 3 L13: -0.0084 L23: -0.3445 REMARK 3 S TENSOR REMARK 3 S11: 0.1325 S12: 0.0676 S13: -0.0213 REMARK 3 S21: -0.1547 S22: -0.0973 S23: -0.0389 REMARK 3 S31: 0.1849 S32: 0.0145 S33: 0.0009 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 512 THROUGH 527) REMARK 3 ORIGIN FOR THE GROUP (A): 80.9206 9.5394 180.5877 REMARK 3 T TENSOR REMARK 3 T11: 0.2537 T22: 0.4325 REMARK 3 T33: 0.3167 T12: 0.0743 REMARK 3 T13: 0.0518 T23: -0.0055 REMARK 3 L TENSOR REMARK 3 L11: 0.6910 L22: 0.2516 REMARK 3 L33: 0.0320 L12: -0.0281 REMARK 3 L13: -0.0708 L23: -0.0166 REMARK 3 S TENSOR REMARK 3 S11: 0.1939 S12: 0.6527 S13: 0.0177 REMARK 3 S21: -0.3129 S22: 0.1691 S23: -0.2524 REMARK 3 S31: -0.0026 S32: 0.3188 S33: 0.0239 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 528 THROUGH 561) REMARK 3 ORIGIN FOR THE GROUP (A): 57.3334 10.1022 180.3136 REMARK 3 T TENSOR REMARK 3 T11: 0.2684 T22: 0.2082 REMARK 3 T33: 0.2349 T12: 0.1616 REMARK 3 T13: 0.0322 T23: 0.0662 REMARK 3 L TENSOR REMARK 3 L11: 0.9147 L22: 0.1476 REMARK 3 L33: 0.3527 L12: 0.1778 REMARK 3 L13: -0.3472 L23: -0.1259 REMARK 3 S TENSOR REMARK 3 S11: 0.2342 S12: 0.6018 S13: 0.3823 REMARK 3 S21: -0.1252 S22: -0.1041 S23: 0.0265 REMARK 3 S31: -0.0040 S32: -0.3946 S33: 0.0813 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 562 THROUGH 570) REMARK 3 ORIGIN FOR THE GROUP (A): 56.5857 27.5709 201.9552 REMARK 3 T TENSOR REMARK 3 T11: 0.5186 T22: 0.1847 REMARK 3 T33: 0.4431 T12: 0.1143 REMARK 3 T13: 0.0554 T23: -0.0368 REMARK 3 L TENSOR REMARK 3 L11: 0.2744 L22: 0.0022 REMARK 3 L33: 0.3438 L12: 0.0331 REMARK 3 L13: 0.3103 L23: 0.0306 REMARK 3 S TENSOR REMARK 3 S11: 0.1188 S12: 0.6306 S13: 0.0132 REMARK 3 S21: 0.2578 S22: -0.1180 S23: -0.1280 REMARK 3 S31: -0.1648 S32: 0.4997 S33: -0.1566 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 365 THROUGH 511 ) REMARK 3 ORIGIN FOR THE GROUP (A): 45.0856 21.1117 154.8285 REMARK 3 T TENSOR REMARK 3 T11: 0.1726 T22: 0.2505 REMARK 3 T33: 0.2464 T12: 0.0593 REMARK 3 T13: -0.0168 T23: 0.0147 REMARK 3 L TENSOR REMARK 3 L11: 2.5004 L22: 1.4201 REMARK 3 L33: 3.5504 L12: -0.5754 REMARK 3 L13: 1.3791 L23: -0.4062 REMARK 3 S TENSOR REMARK 3 S11: -0.0785 S12: -0.1208 S13: -0.0808 REMARK 3 S21: -0.0719 S22: 0.0705 S23: 0.0932 REMARK 3 S31: -0.0628 S32: -0.2304 S33: -0.0001 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 512 THROUGH 527) REMARK 3 ORIGIN FOR THE GROUP (A): 22.5811 29.0894 164.2417 REMARK 3 T TENSOR REMARK 3 T11: 0.4811 T22: 1.2276 REMARK 3 T33: 0.4483 T12: 0.1171 REMARK 3 T13: 0.0000 T23: -0.0691 REMARK 3 L TENSOR REMARK 3 L11: 0.0365 L22: 0.2158 REMARK 3 L33: 0.5937 L12: -0.0666 REMARK 3 L13: -0.1282 L23: 0.3466 REMARK 3 S TENSOR REMARK 3 S11: 0.4552 S12: -0.3033 S13: 0.2796 REMARK 3 S21: 0.1349 S22: -0.3578 S23: -0.0794 REMARK 3 S31: 0.5521 S32: -0.5077 S33: 0.0681 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 528 THROUGH 561 ) REMARK 3 ORIGIN FOR THE GROUP (A): 47.6277 27.9141 161.3566 REMARK 3 T TENSOR REMARK 3 T11: 0.3244 T22: 0.3481 REMARK 3 T33: 0.2720 T12: 0.0554 REMARK 3 T13: -0.0287 T23: 0.0062 REMARK 3 L TENSOR REMARK 3 L11: 0.3864 L22: 0.3672 REMARK 3 L33: 0.5750 L12: -0.2742 REMARK 3 L13: 0.0989 L23: 0.3647 REMARK 3 S TENSOR REMARK 3 S11: -0.2677 S12: -0.2121 S13: 0.2681 REMARK 3 S21: 0.1168 S22: 0.1373 S23: 0.0765 REMARK 3 S31: -0.5788 S32: 0.0772 S33: -0.0661 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 562 THROUGH 570 ) REMARK 3 ORIGIN FOR THE GROUP (A): 45.5258 42.7941 141.4432 REMARK 3 T TENSOR REMARK 3 T11: 0.7833 T22: 0.3465 REMARK 3 T33: 0.5038 T12: 0.0963 REMARK 3 T13: -0.0789 T23: -0.0543 REMARK 3 L TENSOR REMARK 3 L11: 0.1517 L22: 0.8227 REMARK 3 L33: 0.1275 L12: -0.0826 REMARK 3 L13: -0.0844 L23: 0.3022 REMARK 3 S TENSOR REMARK 3 S11: -0.1690 S12: -0.4881 S13: 0.4453 REMARK 3 S21: 0.2166 S22: -0.0489 S23: 0.3370 REMARK 3 S31: -0.3271 S32: -0.1622 S33: 0.0041 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5LRP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 19-AUG-16. REMARK 100 THE DEPOSITION ID IS D_1200001247. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-JUN-15 REMARK 200 TEMPERATURE (KELVIN) : 173 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : MASSIF-3 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9677 REMARK 200 MONOCHROMATOR : SI (111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS VERSION NOVEMBER 3, 2014 REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 35271 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.941 REMARK 200 RESOLUTION RANGE LOW (A) : 45.410 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 2.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 14.8800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.94 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.01 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.3 REMARK 200 DATA REDUNDANCY IN SHELL : 2.00 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.5.6 REMARK 200 STARTING MODEL: 3Q7B REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.30 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.56 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M MES PH 6.5, 25 % (M/W) PEG 8000, REMARK 280 PH 7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 859 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG SER A 545 OE1 GLN A 547 1.91 REMARK 500 O HOH A 754 O HOH A 863 2.11 REMARK 500 O HOH A 718 O HOH A 763 2.12 REMARK 500 OD2 ASP B 467 O HOH B 701 2.18 REMARK 500 OD2 ASP A 397 O HOH A 701 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 702 O HOH A 810 1565 2.03 REMARK 500 O HOH B 702 O HOH B 727 1455 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 390 CB - CG - OD1 ANGL. DEV. = 7.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 397 57.80 -149.44 REMARK 500 SER A 431 -68.94 -140.55 REMARK 500 ARG A 477 55.74 -112.03 REMARK 500 ASP B 397 59.65 -146.83 REMARK 500 SER B 431 -71.08 -139.26 REMARK 500 ARG B 477 54.86 -112.97 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 602 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 390 OD1 REMARK 620 2 ASP A 390 OD2 60.5 REMARK 620 3 GLU A 392 OE2 142.3 97.6 REMARK 620 4 ASP A 534 OD2 108.3 110.9 108.2 REMARK 620 5 HOH A 719 O 89.0 117.4 73.9 131.0 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 601 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 400 OE1 REMARK 620 2 GLU A 400 OE2 54.4 REMARK 620 3 CYS A 507 SG 133.1 90.1 REMARK 620 4 HIS A 510 NE2 76.4 120.5 103.7 REMARK 620 5 CYS A 530 SG 113.0 122.9 112.2 104.8 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 602 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 390 OD1 REMARK 620 2 ASP B 390 OD2 59.0 REMARK 620 3 GLU B 392 OE2 106.4 154.6 REMARK 620 4 ASP B 534 OD2 108.4 113.5 90.3 REMARK 620 5 HOH B 790 O 121.1 86.3 84.9 129.7 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 601 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 400 OE1 REMARK 620 2 GLU B 400 OE2 52.9 REMARK 620 3 CYS B 507 SG 131.9 86.6 REMARK 620 4 HIS B 510 NE2 75.9 115.7 106.9 REMARK 620 5 CYS B 530 SG 114.4 124.3 109.5 109.8 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 602 DBREF 5LRP A 365 570 UNP Q5S581 Q5S581_MOPEI 365 570 DBREF 5LRP B 365 570 UNP Q5S581 Q5S581_MOPEI 365 570 SEQRES 1 A 206 GLY LEU THR TYR SER GLN THR MET GLU LEU LYS ASP SER SEQRES 2 A 206 MET LEU GLN LEU ASP PRO ASN ALA LYS THR TRP ILE ASP SEQRES 3 A 206 ILE GLU GLY ARG PRO GLU ASP PRO VAL GLU ILE ALA ILE SEQRES 4 A 206 TYR GLN PRO ASN ASN GLY GLN TYR ILE HIS PHE TYR ARG SEQRES 5 A 206 GLU PRO THR ASP ILE LYS GLN PHE LYS GLN ASP SER LYS SEQRES 6 A 206 HIS SER HIS GLY ILE ASP ILE GLN ASP LEU PHE SER VAL SEQRES 7 A 206 GLN PRO GLY LEU THR SER ALA VAL ILE GLU SER LEU PRO SEQRES 8 A 206 LYS ASN MET VAL LEU SER CYS GLN GLY ALA ASP ASP ILE SEQRES 9 A 206 ARG LYS LEU LEU ASP SER GLN ASN ARG ARG ASP ILE LYS SEQRES 10 A 206 LEU ILE ASP VAL SER MET GLN LYS ASP ASP ALA ARG LYS SEQRES 11 A 206 PHE GLU ASP LYS ILE TRP ASP GLU TYR LYS HIS LEU CYS SEQRES 12 A 206 ARG MET HIS THR GLY ILE VAL THR GLN LYS LYS LYS ARG SEQRES 13 A 206 GLY GLY LYS GLU GLU VAL THR PRO HIS CYS ALA LEU LEU SEQRES 14 A 206 ASP CYS LEU MET PHE GLU ALA ALA VAL ILE GLY SER PRO SEQRES 15 A 206 GLN ILE PRO THR PRO ARG PRO VAL LEU SER ARG ASP LEU SEQRES 16 A 206 VAL PHE ARG THR GLY PRO PRO ARG VAL VAL LEU SEQRES 1 B 206 GLY LEU THR TYR SER GLN THR MET GLU LEU LYS ASP SER SEQRES 2 B 206 MET LEU GLN LEU ASP PRO ASN ALA LYS THR TRP ILE ASP SEQRES 3 B 206 ILE GLU GLY ARG PRO GLU ASP PRO VAL GLU ILE ALA ILE SEQRES 4 B 206 TYR GLN PRO ASN ASN GLY GLN TYR ILE HIS PHE TYR ARG SEQRES 5 B 206 GLU PRO THR ASP ILE LYS GLN PHE LYS GLN ASP SER LYS SEQRES 6 B 206 HIS SER HIS GLY ILE ASP ILE GLN ASP LEU PHE SER VAL SEQRES 7 B 206 GLN PRO GLY LEU THR SER ALA VAL ILE GLU SER LEU PRO SEQRES 8 B 206 LYS ASN MET VAL LEU SER CYS GLN GLY ALA ASP ASP ILE SEQRES 9 B 206 ARG LYS LEU LEU ASP SER GLN ASN ARG ARG ASP ILE LYS SEQRES 10 B 206 LEU ILE ASP VAL SER MET GLN LYS ASP ASP ALA ARG LYS SEQRES 11 B 206 PHE GLU ASP LYS ILE TRP ASP GLU TYR LYS HIS LEU CYS SEQRES 12 B 206 ARG MET HIS THR GLY ILE VAL THR GLN LYS LYS LYS ARG SEQRES 13 B 206 GLY GLY LYS GLU GLU VAL THR PRO HIS CYS ALA LEU LEU SEQRES 14 B 206 ASP CYS LEU MET PHE GLU ALA ALA VAL ILE GLY SER PRO SEQRES 15 B 206 GLN ILE PRO THR PRO ARG PRO VAL LEU SER ARG ASP LEU SEQRES 16 B 206 VAL PHE ARG THR GLY PRO PRO ARG VAL VAL LEU HET ZN A 601 1 HET MG A 602 1 HET ZN B 601 1 HET MG B 602 1 HETNAM ZN ZINC ION HETNAM MG MAGNESIUM ION FORMUL 3 ZN 2(ZN 2+) FORMUL 4 MG 2(MG 2+) FORMUL 7 HOH *289(H2 O) HELIX 1 AA1 THR A 367 LEU A 379 1 13 HELIX 2 AA2 ASP A 420 SER A 431 1 12 HELIX 3 AA3 ASP A 435 PHE A 440 5 6 HELIX 4 AA4 GLY A 445 LEU A 454 1 10 HELIX 5 AA5 ALA A 465 GLN A 475 1 11 HELIX 6 AA6 GLN A 488 ARG A 493 1 6 HELIX 7 AA7 PHE A 495 LYS A 504 1 10 HELIX 8 AA8 HIS A 505 CYS A 507 5 3 HELIX 9 AA9 CYS A 530 GLY A 544 1 15 HELIX 10 AB1 SER A 556 PHE A 561 1 6 HELIX 11 AB2 THR B 367 LEU B 379 1 13 HELIX 12 AB3 ASP B 420 SER B 431 1 12 HELIX 13 AB4 ASP B 435 PHE B 440 5 6 HELIX 14 AB5 GLY B 445 LEU B 454 1 10 HELIX 15 AB6 ALA B 465 GLN B 475 1 11 HELIX 16 AB7 GLN B 488 ARG B 493 1 6 HELIX 17 AB8 PHE B 495 LYS B 504 1 10 HELIX 18 AB9 HIS B 505 CYS B 507 5 3 HELIX 19 AC1 CYS B 530 GLY B 544 1 15 HELIX 20 AC2 SER B 556 PHE B 561 1 6 SHEET 1 AA1 6 LYS A 481 ASP A 484 0 SHEET 2 AA1 6 VAL A 459 CYS A 462 1 N LEU A 460 O ILE A 483 SHEET 3 AA1 6 THR A 387 GLU A 392 1 N THR A 387 O SER A 461 SHEET 4 AA1 6 GLU A 400 TYR A 404 -1 O TYR A 404 N TRP A 388 SHEET 5 AA1 6 GLN A 410 TYR A 415 -1 O ILE A 412 N ILE A 403 SHEET 6 AA1 6 ARG A 552 PRO A 553 1 O ARG A 552 N TYR A 411 SHEET 1 AA2 2 VAL A 514 LYS A 517 0 SHEET 2 AA2 2 LYS A 523 VAL A 526 -1 O GLU A 524 N GLN A 516 SHEET 1 AA3 4 TRP B 388 GLU B 392 0 SHEET 2 AA3 4 GLU B 400 TYR B 404 -1 O TYR B 404 N TRP B 388 SHEET 3 AA3 4 GLN B 410 TYR B 415 -1 O ILE B 412 N ILE B 403 SHEET 4 AA3 4 ARG B 552 PRO B 553 1 O ARG B 552 N TYR B 411 SHEET 1 AA4 2 VAL B 459 CYS B 462 0 SHEET 2 AA4 2 LYS B 481 ASP B 484 1 O ILE B 483 N LEU B 460 SHEET 1 AA5 2 VAL B 514 LYS B 517 0 SHEET 2 AA5 2 LYS B 523 VAL B 526 -1 O VAL B 526 N VAL B 514 LINK OD1 ASP A 390 MG MG A 602 1555 1555 2.13 LINK OD2 ASP A 390 MG MG A 602 1555 1555 2.07 LINK OE2 GLU A 392 MG MG A 602 1555 1555 2.10 LINK OE1 GLU A 400 ZN ZN A 601 1555 1555 2.59 LINK OE2 GLU A 400 ZN ZN A 601 1555 1555 2.12 LINK SG CYS A 507 ZN ZN A 601 1555 1555 2.33 LINK NE2 HIS A 510 ZN ZN A 601 1555 1555 2.02 LINK SG CYS A 530 ZN ZN A 601 1555 1555 2.31 LINK OD2 ASP A 534 MG MG A 602 1555 1555 2.11 LINK MG MG A 602 O HOH A 719 1555 1555 2.07 LINK OD1 ASP B 390 MG MG B 602 1555 1555 2.20 LINK OD2 ASP B 390 MG MG B 602 1555 1555 2.25 LINK OE2 GLU B 392 MG MG B 602 1555 1555 2.66 LINK OE1 GLU B 400 ZN ZN B 601 1555 1555 2.64 LINK OE2 GLU B 400 ZN ZN B 601 1555 1555 2.23 LINK SG CYS B 507 ZN ZN B 601 1555 1555 2.32 LINK NE2 HIS B 510 ZN ZN B 601 1555 1555 2.04 LINK SG CYS B 530 ZN ZN B 601 1555 1555 2.32 LINK OD2 ASP B 534 MG MG B 602 1555 1555 2.10 LINK MG MG B 602 O HOH B 790 1555 1555 2.08 SITE 1 AC1 4 GLU A 400 CYS A 507 HIS A 510 CYS A 530 SITE 1 AC2 4 ASP A 390 GLU A 392 ASP A 534 HOH A 719 SITE 1 AC3 4 GLU B 400 CYS B 507 HIS B 510 CYS B 530 SITE 1 AC4 5 ASP B 390 ILE B 391 GLU B 392 ASP B 534 SITE 2 AC4 5 HOH B 790 CRYST1 45.439 38.182 137.093 90.00 91.99 90.00 P 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022008 0.000000 0.000764 0.00000 SCALE2 0.000000 0.026190 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007299 0.00000