HEADER HYDROLASE 22-AUG-16 5LRV TITLE STRUCTURE OF CEZANNE/OTUD7B OTU DOMAIN BOUND TO LYS11-LINKED TITLE 2 DIUBIQUITIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: OTU DOMAIN-CONTAINING PROTEIN 7B; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: CELLULAR ZINC FINGER ANTI-NF-KAPPA-B PROTEIN,ZINC FINGER A20 COMPND 5 DOMAIN-CONTAINING PROTEIN 1,ZINC FINGER PROTEIN CEZANNE; COMPND 6 EC: 3.4.19.12; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: POLYUBIQUITIN-B; COMPND 10 CHAIN: B; COMPND 11 ENGINEERED: YES; COMPND 12 MUTATION: YES; COMPND 13 OTHER_DETAILS: LYS11 WAS REPLACED WITH A DIAMINOBUTYRIC ACID (DAB) COMPND 14 RESIDUE; COMPND 15 MOL_ID: 3; COMPND 16 MOLECULE: POLYUBIQUITIN-B; COMPND 17 CHAIN: C; COMPND 18 ENGINEERED: YES; COMPND 19 MUTATION: YES; COMPND 20 OTHER_DETAILS: GLY76 WAS REPLACED WITH A LIGATION HANDLE FOR COMPND 21 DIUBIQUITIN PROBE GENERATION SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: OTUD7B, ZA20D1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606; SOURCE 13 MOL_ID: 3; SOURCE 14 SYNTHETIC: YES; SOURCE 15 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 16 ORGANISM_COMMON: HUMAN; SOURCE 17 ORGANISM_TAXID: 9606 KEYWDS HYDROLASE, PROTEASE, DEUBIQUITINASE, OTU DOMAIN EXPDTA X-RAY DIFFRACTION AUTHOR T.E.T.MEVISSEN,Y.KULATHU,M.P.C.MULDER,P.P.GEURINK,S.L.MASLEN, AUTHOR 2 M.GERSCH,P.R.ELLIOTT,J.E.BURKE,B.D.M.VAN TOL,M.AKUTSU,F.EL OUALID, AUTHOR 3 M.KAWASAKI,S.M.V.FREUND,H.OVAA,D.KOMANDER REVDAT 4 15-NOV-23 5LRV 1 LINK ATOM REVDAT 3 13-SEP-17 5LRV 1 REMARK REVDAT 2 26-OCT-16 5LRV 1 JRNL REVDAT 1 19-OCT-16 5LRV 0 JRNL AUTH T.E.MEVISSEN,Y.KULATHU,M.P.MULDER,P.P.GEURINK,S.L.MASLEN, JRNL AUTH 2 M.GERSCH,P.R.ELLIOTT,J.E.BURKE,B.D.VAN TOL,M.AKUTSU, JRNL AUTH 3 F.EL OUALID,M.KAWASAKI,S.M.FREUND,H.OVAA,D.KOMANDER JRNL TITL MOLECULAR BASIS OF LYS11-POLYUBIQUITIN SPECIFICITY IN THE JRNL TITL 2 DEUBIQUITINASE CEZANNE. JRNL REF NATURE V. 538 402 2016 JRNL REFN ESSN 1476-4687 JRNL PMID 27732584 JRNL DOI 10.1038/NATURE19836 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.16 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.3 REMARK 3 NUMBER OF REFLECTIONS : 11478 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.209 REMARK 3 R VALUE (WORKING SET) : 0.207 REMARK 3 FREE R VALUE : 0.244 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.790 REMARK 3 FREE R VALUE TEST SET COUNT : 550 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.1694 - 4.4439 0.91 2770 137 0.1762 0.2116 REMARK 3 2 4.4439 - 3.5276 0.93 2708 141 0.1874 0.2271 REMARK 3 3 3.5276 - 3.0817 0.95 2738 130 0.2436 0.2816 REMARK 3 4 3.0817 - 2.8000 0.95 2712 142 0.2817 0.3100 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.360 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.880 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 3422 REMARK 3 ANGLE : 0.521 4667 REMARK 3 CHIRALITY : 0.022 538 REMARK 3 PLANARITY : 0.003 595 REMARK 3 DIHEDRAL : 12.087 1215 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' REMARK 3 ORIGIN FOR THE GROUP (A): -8.6590 -0.8852 -9.5667 REMARK 3 T TENSOR REMARK 3 T11: 0.3174 T22: 0.2117 REMARK 3 T33: 0.2380 T12: -0.0489 REMARK 3 T13: -0.0364 T23: 0.0140 REMARK 3 L TENSOR REMARK 3 L11: 2.2536 L22: 1.0407 REMARK 3 L33: 1.5733 L12: -0.6050 REMARK 3 L13: -0.8962 L23: 0.3075 REMARK 3 S TENSOR REMARK 3 S11: 0.0478 S12: -0.1373 S13: -0.1236 REMARK 3 S21: -0.0119 S22: -0.0512 S23: 0.0467 REMARK 3 S31: -0.0571 S32: 0.0131 S33: -0.0006 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'B' REMARK 3 ORIGIN FOR THE GROUP (A): 17.4816 -17.3895 -10.8205 REMARK 3 T TENSOR REMARK 3 T11: 0.4050 T22: 0.2560 REMARK 3 T33: 0.2026 T12: -0.0507 REMARK 3 T13: -0.0082 T23: 0.0296 REMARK 3 L TENSOR REMARK 3 L11: 7.2012 L22: 5.4407 REMARK 3 L33: 2.1037 L12: -4.0501 REMARK 3 L13: 0.0408 L23: 1.6790 REMARK 3 S TENSOR REMARK 3 S11: 0.0161 S12: -0.2932 S13: 0.0782 REMARK 3 S21: 0.0115 S22: 0.0421 S23: -0.2195 REMARK 3 S31: -0.1765 S32: -0.0334 S33: -0.0171 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'C' REMARK 3 ORIGIN FOR THE GROUP (A): -1.8403 -5.3901 17.5648 REMARK 3 T TENSOR REMARK 3 T11: 0.4950 T22: 1.0634 REMARK 3 T33: 0.4235 T12: 0.0908 REMARK 3 T13: -0.0495 T23: 0.1230 REMARK 3 L TENSOR REMARK 3 L11: 1.0874 L22: 4.3056 REMARK 3 L33: 8.8034 L12: -0.3725 REMARK 3 L13: 1.4651 L23: -2.9179 REMARK 3 S TENSOR REMARK 3 S11: -0.3315 S12: -1.6781 S13: -0.1008 REMARK 3 S21: 0.7021 S22: 0.2973 S23: -0.1065 REMARK 3 S31: -0.1698 S32: 0.4570 S33: 0.0698 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5LRV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 22-AUG-16. REMARK 100 THE DEPOSITION ID IS D_1200001256. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-FEB-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97626 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11505 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 56.520 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.6 REMARK 200 DATA REDUNDANCY : 4.600 REMARK 200 R MERGE (I) : 0.14500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.87 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.5 REMARK 200 DATA REDUNDANCY IN SHELL : 4.60 REMARK 200 R MERGE FOR SHELL (I) : 0.68900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.83 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.23 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M PHOSPHATE CITRATE (PH 4.2), 20% REMARK 280 (W/V) PEG 8K, 0.2 M SODIUM CHLORIDE, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 46.01500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 45.87500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 28.26000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 45.87500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 46.01500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 28.26000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5110 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18470 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -28.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 271 REMARK 465 HIS A 272 REMARK 465 LEU A 273 REMARK 465 GLY A 274 REMARK 465 THR A 275 REMARK 465 ASN A 276 REMARK 465 GLY A 277 REMARK 465 ALA A 278 REMARK 465 ASN A 279 REMARK 465 CYS A 280 REMARK 465 GLY A 281 REMARK 465 GLY A 282 REMARK 465 VAL A 283 REMARK 465 GLU A 284 REMARK 465 SER A 285 REMARK 465 SER A 286 REMARK 465 GLU A 287 REMARK 465 ASP A 320 REMARK 465 SER A 321 REMARK 465 GLY A 322 REMARK 465 GLY A 323 REMARK 465 GLU A 324 REMARK 465 LEU A 436 REMARK 465 SER A 437 REMARK 465 SER A 438 REMARK 465 LYS A 439 REMARK 465 HIS A 440 REMARK 465 HIS A 441 REMARK 465 HIS A 442 REMARK 465 HIS A 443 REMARK 465 HIS A 444 REMARK 465 HIS A 445 REMARK 465 ARG B 72 REMARK 465 LEU B 73 REMARK 465 ARG B 74 REMARK 465 GLY B 75 REMARK 465 GLY B 76 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A 128 CG SD CE REMARK 470 GLU A 129 CG CD OE1 OE2 REMARK 470 GLN A 181 CG CD OE1 NE2 REMARK 470 GLU A 222 CG CD OE1 OE2 REMARK 470 GLU A 228 CG CD OE1 OE2 REMARK 470 ASP A 252 CG OD1 OD2 REMARK 470 GLN A 255 CG CD OE1 NE2 REMARK 470 GLU A 260 CG CD OE1 OE2 REMARK 470 LYS A 263 CG CD CE NZ REMARK 470 GLU A 268 CG CD OE1 OE2 REMARK 470 ARG A 270 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 307 NE CZ NH1 NH2 REMARK 470 ARG A 319 CG CD NE CZ NH1 NH2 REMARK 470 MET A 365 CG SD CE REMARK 470 GLU A 383 CG CD OE1 OE2 REMARK 470 LYS A 385 CG CD CE NZ REMARK 470 LYS A 403 CG CD CE NZ REMARK 470 ARG A 410 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 419 CG CD OE1 OE2 REMARK 470 LYS A 432 CG CD CE NZ REMARK 470 LEU B 8 CG CD1 CD2 REMARK 470 GLU B 18 CG CD OE1 OE2 REMARK 470 ARG B 42 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 51 CG CD OE1 OE2 REMARK 470 LYS B 63 CG CD CE NZ REMARK 470 GLN C 2 CG CD OE1 NE2 REMARK 470 VAL C 5 CG1 CG2 REMARK 470 LYS C 6 CG CD CE NZ REMARK 470 LYS C 11 CD CE NZ REMARK 470 THR C 14 OG1 CG2 REMARK 470 VAL C 17 CG1 CG2 REMARK 470 GLU C 18 CG CD OE1 OE2 REMARK 470 SER C 20 OG REMARK 470 GLU C 24 CG CD OE1 OE2 REMARK 470 LYS C 29 CG CD CE NZ REMARK 470 LYS C 33 CG CD CE NZ REMARK 470 LYS C 48 CG CD CE NZ REMARK 470 GLU C 51 CG CD OE1 OE2 REMARK 470 THR C 55 OG1 CG2 REMARK 470 SER C 57 OG REMARK 470 ILE C 61 CG1 CG2 CD1 REMARK 470 GLN C 62 CG CD OE1 NE2 REMARK 470 LYS C 63 CG CD CE NZ REMARK 470 GLU C 64 CG CD OE1 OE2 REMARK 470 SER C 65 OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 208 -71.20 -139.17 REMARK 500 PRO A 269 -179.32 -61.66 REMARK 500 THR B 9 -12.38 -141.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 505 DBREF 5LRV A 128 438 UNP Q6GQQ9 OTU7B_HUMAN 128 438 DBREF 5LRV B 1 76 UNP P0CG47 UBB_HUMAN 1 76 DBREF 5LRV C 1 75 UNP P0CG47 UBB_HUMAN 1 75 SEQADV 5LRV MET A 128 UNP Q6GQQ9 LEU 128 CLONING ARTIFACT SEQADV 5LRV LYS A 439 UNP Q6GQQ9 EXPRESSION TAG SEQADV 5LRV HIS A 440 UNP Q6GQQ9 EXPRESSION TAG SEQADV 5LRV HIS A 441 UNP Q6GQQ9 EXPRESSION TAG SEQADV 5LRV HIS A 442 UNP Q6GQQ9 EXPRESSION TAG SEQADV 5LRV HIS A 443 UNP Q6GQQ9 EXPRESSION TAG SEQADV 5LRV HIS A 444 UNP Q6GQQ9 EXPRESSION TAG SEQADV 5LRV HIS A 445 UNP Q6GQQ9 EXPRESSION TAG SEQADV 5LRV ABU C 76 UNP P0CG47 LINKER SEQRES 1 A 318 MET GLU MET PRO ILE CYS ALA PHE GLN LEU PRO ASP LEU SEQRES 2 A 318 THR VAL TYR ASN GLU ASP PHE ARG SER PHE ILE GLU ARG SEQRES 3 A 318 ASP LEU ILE GLU GLN SER MET LEU VAL ALA LEU GLU GLN SEQRES 4 A 318 ALA GLY ARG LEU ASN TRP TRP VAL SER VAL ASP PRO THR SEQRES 5 A 318 SER GLN ARG LEU LEU PRO LEU ALA THR THR GLY ASP GLY SEQRES 6 A 318 ASN CYS LEU LEU HIS ALA ALA SER LEU GLY MET TRP GLY SEQRES 7 A 318 PHE HIS ASP ARG ASP LEU MET LEU ARG LYS ALA LEU TYR SEQRES 8 A 318 ALA LEU MET GLU LYS GLY VAL GLU LYS GLU ALA LEU LYS SEQRES 9 A 318 ARG ARG TRP ARG TRP GLN GLN THR GLN GLN ASN LYS GLU SEQRES 10 A 318 SER GLY LEU VAL TYR THR GLU ASP GLU TRP GLN LYS GLU SEQRES 11 A 318 TRP ASN GLU LEU ILE LYS LEU ALA SER SER GLU PRO ARG SEQRES 12 A 318 MET HIS LEU GLY THR ASN GLY ALA ASN CYS GLY GLY VAL SEQRES 13 A 318 GLU SER SER GLU GLU PRO VAL TYR GLU SER LEU GLU GLU SEQRES 14 A 318 PHE HIS VAL PHE VAL LEU ALA HIS VAL LEU ARG ARG PRO SEQRES 15 A 318 ILE VAL VAL VAL ALA ASP THR MET LEU ARG ASP SER GLY SEQRES 16 A 318 GLY GLU ALA PHE ALA PRO ILE PRO PHE GLY GLY ILE TYR SEQRES 17 A 318 LEU PRO LEU GLU VAL PRO ALA SER GLN CYS HIS ARG SER SEQRES 18 A 318 PRO LEU VAL LEU ALA TYR ASP GLN ALA HIS PHE SER ALA SEQRES 19 A 318 LEU VAL SER MET GLU GLN LYS GLU ASN THR LYS GLU GLN SEQRES 20 A 318 ALA VAL ILE PRO LEU THR ASP SER GLU TYR LYS LEU LEU SEQRES 21 A 318 PRO LEU HIS PHE ALA VAL ASP PRO GLY LYS GLY TRP GLU SEQRES 22 A 318 TRP GLY LYS ASP ASP SER ASP ASN VAL ARG LEU ALA SER SEQRES 23 A 318 VAL ILE LEU SER LEU GLU VAL LYS LEU HIS LEU LEU HIS SEQRES 24 A 318 SER TYR MET ASN VAL LYS TRP ILE PRO LEU SER SER LYS SEQRES 25 A 318 HIS HIS HIS HIS HIS HIS SEQRES 1 B 76 MET GLN ILE PHE VAL LYS THR LEU THR GLY DAB THR ILE SEQRES 2 B 76 THR LEU GLU VAL GLU PRO SER ASP THR ILE GLU ASN VAL SEQRES 3 B 76 LYS ALA LYS ILE GLN ASP LYS GLU GLY ILE PRO PRO ASP SEQRES 4 B 76 GLN GLN ARG LEU ILE PHE ALA GLY LYS GLN LEU GLU ASP SEQRES 5 B 76 GLY ARG THR LEU SER ASP TYR ASN ILE GLN LYS GLU SER SEQRES 6 B 76 THR LEU HIS LEU VAL LEU ARG LEU ARG GLY GLY SEQRES 1 C 76 MET GLN ILE PHE VAL LYS THR LEU THR GLY LYS THR ILE SEQRES 2 C 76 THR LEU GLU VAL GLU PRO SER ASP THR ILE GLU ASN VAL SEQRES 3 C 76 LYS ALA LYS ILE GLN ASP LYS GLU GLY ILE PRO PRO ASP SEQRES 4 C 76 GLN GLN ARG LEU ILE PHE ALA GLY LYS GLN LEU GLU ASP SEQRES 5 C 76 GLY ARG THR LEU SER ASP TYR ASN ILE GLN LYS GLU SER SEQRES 6 C 76 THR LEU HIS LEU VAL LEU ARG LEU ARG GLY ABU MODRES 5LRV DAB B 11 LYS MODIFIED RESIDUE HET DAB B 11 7 HET ABU C 76 6 HET PO4 A 501 5 HET GOL A 502 6 HET GOL A 503 6 HET GOL A 504 6 HET GOL A 505 6 HETNAM DAB 2,4-DIAMINOBUTYRIC ACID HETNAM ABU GAMMA-AMINO-BUTANOIC ACID HETNAM PO4 PHOSPHATE ION HETNAM GOL GLYCEROL HETSYN ABU GAMMA(AMINO)-BUTYRIC ACID HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 DAB C4 H10 N2 O2 FORMUL 3 ABU C4 H9 N O2 FORMUL 4 PO4 O4 P 3- FORMUL 5 GOL 4(C3 H8 O3) FORMUL 9 HOH *3(H2 O) HELIX 1 AA1 ASP A 146 ASP A 154 1 9 HELIX 2 AA2 GLU A 157 ALA A 167 1 11 HELIX 3 AA3 TRP A 172 ASP A 177 1 6 HELIX 4 AA4 ASN A 193 ALA A 198 1 6 HELIX 5 AA5 GLY A 202 PHE A 206 5 5 HELIX 6 AA6 ASP A 208 LYS A 223 1 16 HELIX 7 AA7 GLU A 226 LYS A 243 1 18 HELIX 8 AA8 GLU A 244 GLY A 246 5 3 HELIX 9 AA9 THR A 250 ALA A 265 1 16 HELIX 10 AB1 GLU A 295 LEU A 306 1 12 HELIX 11 AB2 PRO A 341 CYS A 345 5 5 HELIX 12 AB3 MET A 365 GLU A 369 1 5 HELIX 13 AB4 GLU A 400 ASP A 407 1 8 HELIX 14 AB5 ASP A 407 SER A 413 1 7 HELIX 15 AB6 SER A 417 MET A 429 1 13 HELIX 16 AB7 THR B 22 GLY B 35 1 14 HELIX 17 AB8 PRO B 37 GLN B 41 5 5 HELIX 18 AB9 THR B 55 ASN B 60 5 6 HELIX 19 AC1 THR C 22 GLY C 35 1 14 HELIX 20 AC2 PRO C 37 ASP C 39 5 3 SHEET 1 AA1 3 GLN A 374 PRO A 378 0 SHEET 2 AA1 3 MET A 130 GLN A 136 -1 N PHE A 135 O ALA A 375 SHEET 3 AA1 3 VAL A 431 ILE A 434 -1 O LYS A 432 N ILE A 132 SHEET 1 AA2 5 LEU A 183 PRO A 185 0 SHEET 2 AA2 5 PHE A 359 SER A 364 -1 O VAL A 363 N LEU A 184 SHEET 3 AA2 5 LEU A 350 TYR A 354 -1 N VAL A 351 O LEU A 362 SHEET 4 AA2 5 ILE A 310 VAL A 313 1 N VAL A 311 O LEU A 352 SHEET 5 AA2 5 GLY A 333 TYR A 335 -1 O TYR A 335 N ILE A 310 SHEET 1 AA3 5 ILE B 13 GLU B 16 0 SHEET 2 AA3 5 GLN B 2 LYS B 6 -1 N VAL B 5 O ILE B 13 SHEET 3 AA3 5 THR B 66 VAL B 70 1 O LEU B 67 N PHE B 4 SHEET 4 AA3 5 ARG B 42 PHE B 45 -1 N ILE B 44 O HIS B 68 SHEET 5 AA3 5 LYS B 48 GLN B 49 -1 O LYS B 48 N PHE B 45 SHEET 1 AA4 5 THR C 12 GLU C 16 0 SHEET 2 AA4 5 GLN C 2 LYS C 6 -1 N VAL C 5 O ILE C 13 SHEET 3 AA4 5 THR C 66 LEU C 71 1 O LEU C 67 N LYS C 6 SHEET 4 AA4 5 GLN C 41 PHE C 45 -1 N ILE C 44 O HIS C 68 SHEET 5 AA4 5 LYS C 48 GLN C 49 -1 O LYS C 48 N PHE C 45 LINK SG CYS A 194 CB ABU C 76 1555 1555 1.81 LINK C GLY B 10 N DAB B 11 1555 1555 1.33 LINK C DAB B 11 N THR B 12 1555 1555 1.32 LINK ND DAB B 11 C ABU C 76 1555 1555 1.33 LINK C GLY C 75 N ABU C 76 1555 1555 1.32 SITE 1 AC1 6 HIS A 346 ARG A 347 VAL B 17 GLU B 18 SITE 2 AC1 6 ASP B 21 LYS B 29 SITE 1 AC2 3 ILE A 156 GLN A 158 HIS A 346 SITE 1 AC3 3 ARG A 153 GLN A 344 ALA B 28 SITE 1 AC4 3 GLU A 152 GLU A 339 GLN A 344 SITE 1 AC5 8 LEU A 318 TYR A 354 GLN A 356 ALA A 357 SITE 2 AC5 8 GLY C 35 ILE C 36 PRO C 37 LEU C 73 CRYST1 92.030 56.520 91.750 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010866 0.000000 0.000000 0.00000 SCALE2 0.000000 0.017693 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010899 0.00000