HEADER SIGNALING PROTEIN 26-AUG-16 5LSG TITLE PPARGAMMA COMPLEX WITH THE BETULINIC ACID COMPND MOL_ID: 1; COMPND 2 MOLECULE: PEROXISOME PROLIFERATOR-ACTIVATED RECEPTOR GAMMA; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 223-505; COMPND 5 SYNONYM: PPAR-GAMMA,NUCLEAR RECEPTOR SUBFAMILY 1 GROUP C MEMBER 3; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PPARG, NR1C3; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28 KEYWDS ANTAGONIST, COMPLEX, TRANSCRIPTION FACTOR, NUCLEAR RECEPTOR, KEYWDS 2 SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR G.POCHETTI,R.MONTANARI,D.CAPELLI,F.LOIODICE,A.LAGHEZZA,E.CALLERI, AUTHOR 2 A.PAIARDINI REVDAT 2 17-JAN-24 5LSG 1 REMARK REVDAT 1 09-AUG-17 5LSG 0 JRNL AUTH G.BRUSOTTI,R.MONTANARI,D.CAPELLI,G.CATTANEO,A.LAGHEZZA, JRNL AUTH 2 P.TORTORELLA,F.LOIODICE,F.PEIRETTI,B.BONARDO,A.PAIARDINI, JRNL AUTH 3 E.CALLERI,G.POCHETTI JRNL TITL BETULINIC ACID IS A PPAR GAMMA ANTAGONIST THAT IMPROVES JRNL TITL 2 GLUCOSE UPTAKE, PROMOTES OSTEOGENESIS AND INHIBITS JRNL TITL 3 ADIPOGENESIS. JRNL REF SCI REP V. 7 5777 2017 JRNL REFN ESSN 2045-2322 JRNL PMID 28720829 JRNL DOI 10.1038/S41598-017-05666-6 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8.4_1496 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.68 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.370 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 3 NUMBER OF REFLECTIONS : 43025 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.229 REMARK 3 R VALUE (WORKING SET) : 0.227 REMARK 3 FREE R VALUE : 0.264 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2153 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.6950 - 4.9307 0.95 2726 144 0.2142 0.2249 REMARK 3 2 4.9307 - 3.9143 1.00 2782 146 0.1910 0.2454 REMARK 3 3 3.9143 - 3.4197 1.00 2761 146 0.2076 0.2514 REMARK 3 4 3.4197 - 3.1071 0.99 2747 144 0.2344 0.2470 REMARK 3 5 3.1071 - 2.8844 0.99 2762 146 0.2485 0.2776 REMARK 3 6 2.8844 - 2.7144 0.99 2760 145 0.2435 0.3357 REMARK 3 7 2.7144 - 2.5785 0.99 2723 143 0.2448 0.2977 REMARK 3 8 2.5785 - 2.4662 0.99 2720 144 0.2473 0.2803 REMARK 3 9 2.4662 - 2.3713 0.99 2714 143 0.2506 0.3108 REMARK 3 10 2.3713 - 2.2895 0.99 2713 143 0.2488 0.2976 REMARK 3 11 2.2895 - 2.2179 0.99 2695 142 0.2664 0.2936 REMARK 3 12 2.2179 - 2.1545 0.99 2722 143 0.2681 0.3048 REMARK 3 13 2.1545 - 2.0978 0.98 2703 142 0.2751 0.3190 REMARK 3 14 2.0978 - 2.0466 0.98 2682 141 0.3076 0.3355 REMARK 3 15 2.0466 - 2.0001 0.96 2662 141 0.3432 0.3730 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.260 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 30.530 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 4215 REMARK 3 ANGLE : 1.265 5696 REMARK 3 CHIRALITY : 0.050 669 REMARK 3 PLANARITY : 0.006 714 REMARK 3 DIHEDRAL : 16.177 1592 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5LSG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 26-AUG-16. REMARK 100 THE DEPOSITION ID IS D_1200001268. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-MAR-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM14 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9537 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 43045 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 200 DATA REDUNDANCY : 5.280 REMARK 200 R MERGE (I) : 0.03000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 29.2500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.20 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.8 REMARK 200 DATA REDUNDANCY IN SHELL : 5.32 REMARK 200 R MERGE FOR SHELL (I) : 0.46700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.740 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: 3D6D REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.74 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.35 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: RESERVOIR: 0.8M NACITRATE, 0.15M TRIS, REMARK 280 PH8.0. THE CRYSTALS WERE SOAKED FOR ONE WEEK IN A STORAGE REMARK 280 SOLUTION (1.2 M NA CITRATE, 0.15M TRIS, PH 8.0) CONTAINING THE REMARK 280 LIGAND BA (0.5 MM)., VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 46.43000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 30.42500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 46.43000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 30.42500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 174 REMARK 465 GLY A 175 REMARK 465 SER A 176 REMARK 465 SER A 177 REMARK 465 HIS A 178 REMARK 465 HIS A 179 REMARK 465 HIS A 180 REMARK 465 HIS A 181 REMARK 465 HIS A 182 REMARK 465 HIS A 183 REMARK 465 SER A 184 REMARK 465 SER A 185 REMARK 465 GLY A 186 REMARK 465 LEU A 187 REMARK 465 VAL A 188 REMARK 465 PRO A 189 REMARK 465 ARG A 190 REMARK 465 GLY A 191 REMARK 465 SER A 192 REMARK 465 HIS A 193 REMARK 465 MET A 194 REMARK 465 ALA A 195 REMARK 465 GLU A 196 REMARK 465 ILE A 197 REMARK 465 SER A 198 REMARK 465 SER A 199 REMARK 465 ASP A 200 REMARK 465 ILE A 201 REMARK 465 ASP A 202 REMARK 465 GLN A 203 REMARK 465 LEU A 204 REMARK 465 ASN A 205 REMARK 465 PRO A 206 REMARK 465 PHE A 264 REMARK 465 LYS A 265 REMARK 465 HIS A 266 REMARK 465 ILE A 267 REMARK 465 THR A 268 REMARK 465 PRO A 269 REMARK 465 LEU A 270 REMARK 465 GLN A 271 REMARK 465 GLU A 272 REMARK 465 GLN A 273 REMARK 465 SER A 274 REMARK 465 LYS A 275 REMARK 465 ASP A 475 REMARK 465 LEU A 476 REMARK 465 TYR A 477 REMARK 465 MET B 174 REMARK 465 GLY B 175 REMARK 465 SER B 176 REMARK 465 SER B 177 REMARK 465 HIS B 178 REMARK 465 HIS B 179 REMARK 465 HIS B 180 REMARK 465 HIS B 181 REMARK 465 HIS B 182 REMARK 465 HIS B 183 REMARK 465 SER B 184 REMARK 465 SER B 185 REMARK 465 GLY B 186 REMARK 465 LEU B 187 REMARK 465 VAL B 188 REMARK 465 PRO B 189 REMARK 465 ARG B 190 REMARK 465 GLY B 191 REMARK 465 SER B 192 REMARK 465 HIS B 193 REMARK 465 MET B 194 REMARK 465 ALA B 195 REMARK 465 GLU B 196 REMARK 465 ILE B 197 REMARK 465 SER B 198 REMARK 465 SER B 199 REMARK 465 ASP B 200 REMARK 465 ILE B 201 REMARK 465 ASP B 202 REMARK 465 GLN B 203 REMARK 465 LEU B 204 REMARK 465 ASN B 205 REMARK 465 PRO B 206 REMARK 465 PRO B 269 REMARK 465 LEU B 270 REMARK 465 GLN B 271 REMARK 465 GLU B 272 REMARK 465 GLN B 273 REMARK 465 SER B 274 REMARK 465 LYS B 275 REMARK 465 LYS B 474 REMARK 465 ASP B 475 REMARK 465 LEU B 476 REMARK 465 TYR B 477 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP B 260 CG OD1 OD2 REMARK 470 LYS B 261 CG CD CE NZ REMARK 470 LYS B 263 CG CD CE NZ REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 GLU A 259 CB CG CD OE1 OE2 REMARK 480 LYS A 261 CB CG CD CE NZ REMARK 480 LYS A 263 CB CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP A 243 O HOH A 601 1.80 REMARK 500 OE2 GLU A 298 O HOH A 602 2.04 REMARK 500 NZ LYS B 224 O HOH B 501 2.05 REMARK 500 OE1 GLU A 207 O HOH A 603 2.10 REMARK 500 OD2 ASP B 313 O HOH B 502 2.10 REMARK 500 OD1 ASP A 411 O HOH A 604 2.12 REMARK 500 OE2 GLU B 471 O HOH B 503 2.13 REMARK 500 OE1 GLU B 407 O HOH B 504 2.16 REMARK 500 OD2 ASP A 396 O HOH A 605 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 LYS B 354 C SER B 355 N 0.150 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO B 359 C - N - CD ANGL. DEV. = 17.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 244 99.89 -163.27 REMARK 500 ASN A 335 -164.15 -127.07 REMARK 500 LEU A 393 57.63 -96.76 REMARK 500 GLU A 460 74.50 -113.55 REMARK 500 LEU B 237 -114.39 -63.42 REMARK 500 THR B 241 -16.41 39.59 REMARK 500 THR B 242 88.24 -53.66 REMARK 500 LYS B 261 -84.00 -66.29 REMARK 500 LYS B 263 -77.68 -43.32 REMARK 500 PHE B 264 93.62 56.98 REMARK 500 VAL B 277 -76.00 -38.52 REMARK 500 ASP B 310 131.09 -37.55 REMARK 500 SER B 342 174.52 57.72 REMARK 500 GLU B 343 -66.07 48.74 REMARK 500 ARG B 357 179.93 -48.97 REMARK 500 SER B 394 -77.12 -72.06 REMARK 500 ASP B 462 70.92 -66.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ARG A 357 LYS A 358 -149.63 REMARK 500 GLU B 343 GLY B 344 -145.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue QZQ A 501 DBREF 5LSG A 195 477 UNP P37231 PPARG_HUMAN 223 505 DBREF 5LSG B 195 477 UNP P37231 PPARG_HUMAN 223 505 SEQADV 5LSG MET A 174 UNP P37231 INITIATING METHIONINE SEQADV 5LSG GLY A 175 UNP P37231 EXPRESSION TAG SEQADV 5LSG SER A 176 UNP P37231 EXPRESSION TAG SEQADV 5LSG SER A 177 UNP P37231 EXPRESSION TAG SEQADV 5LSG HIS A 178 UNP P37231 EXPRESSION TAG SEQADV 5LSG HIS A 179 UNP P37231 EXPRESSION TAG SEQADV 5LSG HIS A 180 UNP P37231 EXPRESSION TAG SEQADV 5LSG HIS A 181 UNP P37231 EXPRESSION TAG SEQADV 5LSG HIS A 182 UNP P37231 EXPRESSION TAG SEQADV 5LSG HIS A 183 UNP P37231 EXPRESSION TAG SEQADV 5LSG SER A 184 UNP P37231 EXPRESSION TAG SEQADV 5LSG SER A 185 UNP P37231 EXPRESSION TAG SEQADV 5LSG GLY A 186 UNP P37231 EXPRESSION TAG SEQADV 5LSG LEU A 187 UNP P37231 EXPRESSION TAG SEQADV 5LSG VAL A 188 UNP P37231 EXPRESSION TAG SEQADV 5LSG PRO A 189 UNP P37231 EXPRESSION TAG SEQADV 5LSG ARG A 190 UNP P37231 EXPRESSION TAG SEQADV 5LSG GLY A 191 UNP P37231 EXPRESSION TAG SEQADV 5LSG SER A 192 UNP P37231 EXPRESSION TAG SEQADV 5LSG HIS A 193 UNP P37231 EXPRESSION TAG SEQADV 5LSG MET A 194 UNP P37231 EXPRESSION TAG SEQADV 5LSG MET B 174 UNP P37231 INITIATING METHIONINE SEQADV 5LSG GLY B 175 UNP P37231 EXPRESSION TAG SEQADV 5LSG SER B 176 UNP P37231 EXPRESSION TAG SEQADV 5LSG SER B 177 UNP P37231 EXPRESSION TAG SEQADV 5LSG HIS B 178 UNP P37231 EXPRESSION TAG SEQADV 5LSG HIS B 179 UNP P37231 EXPRESSION TAG SEQADV 5LSG HIS B 180 UNP P37231 EXPRESSION TAG SEQADV 5LSG HIS B 181 UNP P37231 EXPRESSION TAG SEQADV 5LSG HIS B 182 UNP P37231 EXPRESSION TAG SEQADV 5LSG HIS B 183 UNP P37231 EXPRESSION TAG SEQADV 5LSG SER B 184 UNP P37231 EXPRESSION TAG SEQADV 5LSG SER B 185 UNP P37231 EXPRESSION TAG SEQADV 5LSG GLY B 186 UNP P37231 EXPRESSION TAG SEQADV 5LSG LEU B 187 UNP P37231 EXPRESSION TAG SEQADV 5LSG VAL B 188 UNP P37231 EXPRESSION TAG SEQADV 5LSG PRO B 189 UNP P37231 EXPRESSION TAG SEQADV 5LSG ARG B 190 UNP P37231 EXPRESSION TAG SEQADV 5LSG GLY B 191 UNP P37231 EXPRESSION TAG SEQADV 5LSG SER B 192 UNP P37231 EXPRESSION TAG SEQADV 5LSG HIS B 193 UNP P37231 EXPRESSION TAG SEQADV 5LSG MET B 194 UNP P37231 EXPRESSION TAG SEQRES 1 A 304 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 304 LEU VAL PRO ARG GLY SER HIS MET ALA GLU ILE SER SER SEQRES 3 A 304 ASP ILE ASP GLN LEU ASN PRO GLU SER ALA ASP LEU ARG SEQRES 4 A 304 ALA LEU ALA LYS HIS LEU TYR ASP SER TYR ILE LYS SER SEQRES 5 A 304 PHE PRO LEU THR LYS ALA LYS ALA ARG ALA ILE LEU THR SEQRES 6 A 304 GLY LYS THR THR ASP LYS SER PRO PHE VAL ILE TYR ASP SEQRES 7 A 304 MET ASN SER LEU MET MET GLY GLU ASP LYS ILE LYS PHE SEQRES 8 A 304 LYS HIS ILE THR PRO LEU GLN GLU GLN SER LYS GLU VAL SEQRES 9 A 304 ALA ILE ARG ILE PHE GLN GLY CYS GLN PHE ARG SER VAL SEQRES 10 A 304 GLU ALA VAL GLN GLU ILE THR GLU TYR ALA LYS SER ILE SEQRES 11 A 304 PRO GLY PHE VAL ASN LEU ASP LEU ASN ASP GLN VAL THR SEQRES 12 A 304 LEU LEU LYS TYR GLY VAL HIS GLU ILE ILE TYR THR MET SEQRES 13 A 304 LEU ALA SER LEU MET ASN LYS ASP GLY VAL LEU ILE SER SEQRES 14 A 304 GLU GLY GLN GLY PHE MET THR ARG GLU PHE LEU LYS SER SEQRES 15 A 304 LEU ARG LYS PRO PHE GLY ASP PHE MET GLU PRO LYS PHE SEQRES 16 A 304 GLU PHE ALA VAL LYS PHE ASN ALA LEU GLU LEU ASP ASP SEQRES 17 A 304 SER ASP LEU ALA ILE PHE ILE ALA VAL ILE ILE LEU SER SEQRES 18 A 304 GLY ASP ARG PRO GLY LEU LEU ASN VAL LYS PRO ILE GLU SEQRES 19 A 304 ASP ILE GLN ASP ASN LEU LEU GLN ALA LEU GLU LEU GLN SEQRES 20 A 304 LEU LYS LEU ASN HIS PRO GLU SER SER GLN LEU PHE ALA SEQRES 21 A 304 LYS LEU LEU GLN LYS MET THR ASP LEU ARG GLN ILE VAL SEQRES 22 A 304 THR GLU HIS VAL GLN LEU LEU GLN VAL ILE LYS LYS THR SEQRES 23 A 304 GLU THR ASP MET SER LEU HIS PRO LEU LEU GLN GLU ILE SEQRES 24 A 304 TYR LYS ASP LEU TYR SEQRES 1 B 304 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 304 LEU VAL PRO ARG GLY SER HIS MET ALA GLU ILE SER SER SEQRES 3 B 304 ASP ILE ASP GLN LEU ASN PRO GLU SER ALA ASP LEU ARG SEQRES 4 B 304 ALA LEU ALA LYS HIS LEU TYR ASP SER TYR ILE LYS SER SEQRES 5 B 304 PHE PRO LEU THR LYS ALA LYS ALA ARG ALA ILE LEU THR SEQRES 6 B 304 GLY LYS THR THR ASP LYS SER PRO PHE VAL ILE TYR ASP SEQRES 7 B 304 MET ASN SER LEU MET MET GLY GLU ASP LYS ILE LYS PHE SEQRES 8 B 304 LYS HIS ILE THR PRO LEU GLN GLU GLN SER LYS GLU VAL SEQRES 9 B 304 ALA ILE ARG ILE PHE GLN GLY CYS GLN PHE ARG SER VAL SEQRES 10 B 304 GLU ALA VAL GLN GLU ILE THR GLU TYR ALA LYS SER ILE SEQRES 11 B 304 PRO GLY PHE VAL ASN LEU ASP LEU ASN ASP GLN VAL THR SEQRES 12 B 304 LEU LEU LYS TYR GLY VAL HIS GLU ILE ILE TYR THR MET SEQRES 13 B 304 LEU ALA SER LEU MET ASN LYS ASP GLY VAL LEU ILE SER SEQRES 14 B 304 GLU GLY GLN GLY PHE MET THR ARG GLU PHE LEU LYS SER SEQRES 15 B 304 LEU ARG LYS PRO PHE GLY ASP PHE MET GLU PRO LYS PHE SEQRES 16 B 304 GLU PHE ALA VAL LYS PHE ASN ALA LEU GLU LEU ASP ASP SEQRES 17 B 304 SER ASP LEU ALA ILE PHE ILE ALA VAL ILE ILE LEU SER SEQRES 18 B 304 GLY ASP ARG PRO GLY LEU LEU ASN VAL LYS PRO ILE GLU SEQRES 19 B 304 ASP ILE GLN ASP ASN LEU LEU GLN ALA LEU GLU LEU GLN SEQRES 20 B 304 LEU LYS LEU ASN HIS PRO GLU SER SER GLN LEU PHE ALA SEQRES 21 B 304 LYS LEU LEU GLN LYS MET THR ASP LEU ARG GLN ILE VAL SEQRES 22 B 304 THR GLU HIS VAL GLN LEU LEU GLN VAL ILE LYS LYS THR SEQRES 23 B 304 GLU THR ASP MET SER LEU HIS PRO LEU LEU GLN GLU ILE SEQRES 24 B 304 TYR LYS ASP LEU TYR HET QZQ A 501 33 HETNAM QZQ BETULINIC ACID FORMUL 3 QZQ C30 H46 O3 FORMUL 4 HOH *141(H2 O) HELIX 1 AA1 GLU A 207 PHE A 226 1 20 HELIX 2 AA2 THR A 229 THR A 238 1 10 HELIX 3 AA3 ASP A 251 ILE A 262 1 12 HELIX 4 AA4 VAL A 277 ILE A 303 1 27 HELIX 5 AA5 GLY A 305 LEU A 309 5 5 HELIX 6 AA6 ASP A 310 ALA A 331 1 22 HELIX 7 AA7 ARG A 350 SER A 355 1 6 HELIX 8 AA8 MET A 364 ASN A 375 1 12 HELIX 9 AA9 ALA A 376 GLU A 378 5 3 HELIX 10 AB1 ASP A 380 LEU A 393 1 14 HELIX 11 AB2 ASN A 402 HIS A 425 1 24 HELIX 12 AB3 GLN A 430 GLU A 460 1 31 HELIX 13 AB4 HIS A 466 TYR A 473 1 8 HELIX 14 AB5 SER B 208 PHE B 226 1 19 HELIX 15 AB6 THR B 229 LEU B 237 1 9 HELIX 16 AB7 ASP B 251 ILE B 262 1 12 HELIX 17 AB8 VAL B 277 SER B 302 1 26 HELIX 18 AB9 ASP B 310 LEU B 333 1 24 HELIX 19 AC1 ARG B 350 SER B 355 1 6 HELIX 20 AC2 PRO B 359 PHE B 363 5 5 HELIX 21 AC3 MET B 364 ALA B 376 1 13 HELIX 22 AC4 ASP B 380 LEU B 393 1 14 HELIX 23 AC5 ASN B 402 HIS B 425 1 24 HELIX 24 AC6 GLN B 430 LYS B 457 1 28 HELIX 25 AC7 HIS B 466 TYR B 473 1 8 SHEET 1 AA1 4 PHE A 247 ILE A 249 0 SHEET 2 AA1 4 GLY A 346 THR A 349 1 O PHE A 347 N ILE A 249 SHEET 3 AA1 4 GLY A 338 ILE A 341 -1 N VAL A 339 O MET A 348 SHEET 4 AA1 4 MET A 334 ASN A 335 -1 N ASN A 335 O GLY A 338 SHEET 1 AA2 4 PHE B 247 ILE B 249 0 SHEET 2 AA2 4 GLY B 346 THR B 349 1 O PHE B 347 N ILE B 249 SHEET 3 AA2 4 GLY B 338 ILE B 341 -1 N VAL B 339 O MET B 348 SHEET 4 AA2 4 MET B 334 ASN B 335 -1 N ASN B 335 O GLY B 338 CISPEP 1 LYS B 358 PRO B 359 0 -1.45 SITE 1 AC1 15 PHE A 282 CYS A 285 GLN A 286 ARG A 288 SITE 2 AC1 15 SER A 289 HIS A 323 ILE A 326 TYR A 327 SITE 3 AC1 15 LEU A 330 VAL A 339 ILE A 341 MET A 364 SITE 4 AC1 15 LYS A 367 HIS A 449 TYR A 473 CRYST1 92.860 60.850 118.030 90.00 102.48 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010769 0.000000 0.002383 0.00000 SCALE2 0.000000 0.016434 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008677 0.00000