data_5LSN # _entry.id 5LSN # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.392 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 5LSN pdb_00005lsn 10.2210/pdb5lsn/pdb WWPDB D_1200001297 ? ? BMRB 34038 ? 10.13018/BMR34038 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2017-09-20 2 'Structure model' 1 1 2018-02-28 3 'Structure model' 1 2 2019-05-08 4 'Structure model' 1 3 2024-05-15 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Data collection' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 3 'Structure model' pdbx_nmr_software 3 4 'Structure model' chem_comp_atom 4 4 'Structure model' chem_comp_bond 5 4 'Structure model' database_2 # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.country' 2 2 'Structure model' '_citation.journal_abbrev' 3 2 'Structure model' '_citation.journal_id_CSD' 4 2 'Structure model' '_citation.journal_id_ISSN' 5 2 'Structure model' '_citation.journal_volume' 6 2 'Structure model' '_citation.page_first' 7 2 'Structure model' '_citation.page_last' 8 2 'Structure model' '_citation.pdbx_database_id_DOI' 9 2 'Structure model' '_citation.pdbx_database_id_PubMed' 10 2 'Structure model' '_citation.title' 11 2 'Structure model' '_citation.year' 12 3 'Structure model' '_pdbx_nmr_software.name' 13 4 'Structure model' '_database_2.pdbx_DOI' 14 4 'Structure model' '_database_2.pdbx_database_accession' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr REL _pdbx_database_status.entry_id 5LSN _pdbx_database_status.recvd_initial_deposition_date 2016-09-05 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs REL _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # _pdbx_database_related.db_name BMRB _pdbx_database_related.details 'SINEB2 element of the long non-coding RNA activator of translation AS Uchl1' _pdbx_database_related.db_id 34038 _pdbx_database_related.content_type unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Podbevsek, P.' 1 ? 'Plavec, J.' 2 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Sci Rep' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 2045-2322 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 8 _citation.language ? _citation.page_first 3189 _citation.page_last 3189 _citation.title 'Structural determinants of the SINE B2 element embedded in the long non-coding RNA activator of translation AS Uchl1.' _citation.year 2018 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1038/s41598-017-14908-6 _citation.pdbx_database_id_PubMed 29453387 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Podbevsek, P.' 1 ? primary 'Fasolo, F.' 2 ? primary 'Bon, C.' 3 ? primary 'Cimatti, L.' 4 ? primary 'Reisser, S.' 5 ? primary 'Carninci, P.' 6 ? primary 'Bussi, G.' 7 ? primary 'Zucchelli, S.' 8 ? primary 'Plavec, J.' 9 ? primary 'Gustincich, S.' 10 ? # _entity.id 1 _entity.type polymer _entity.src_method syn _entity.pdbx_description 'RNA (29-MER)' _entity.formula_weight 9309.521 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code CCUCGUGGUGGUUGUGAACCACCAUGUGG _entity_poly.pdbx_seq_one_letter_code_can CCUCGUGGUGGUUGUGAACCACCAUGUGG _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 C n 1 2 C n 1 3 U n 1 4 C n 1 5 G n 1 6 U n 1 7 G n 1 8 G n 1 9 U n 1 10 G n 1 11 G n 1 12 U n 1 13 U n 1 14 G n 1 15 U n 1 16 G n 1 17 A n 1 18 A n 1 19 C n 1 20 C n 1 21 A n 1 22 C n 1 23 C n 1 24 A n 1 25 U n 1 26 G n 1 27 U n 1 28 G n 1 29 G n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 29 _pdbx_entity_src_syn.organism_scientific 'Mus musculus' _pdbx_entity_src_syn.organism_common_name 'House Mouse' _pdbx_entity_src_syn.ncbi_taxonomy_id 10090 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 C 1 64 64 C C A . n A 1 2 C 2 65 65 C C A . n A 1 3 U 3 66 66 U U A . n A 1 4 C 4 67 67 C C A . n A 1 5 G 5 68 68 G G A . n A 1 6 U 6 69 69 U U A . n A 1 7 G 7 70 70 G G A . n A 1 8 G 8 71 71 G G A . n A 1 9 U 9 72 72 U U A . n A 1 10 G 10 73 73 G G A . n A 1 11 G 11 74 74 G G A . n A 1 12 U 12 75 75 U U A . n A 1 13 U 13 76 76 U U A . n A 1 14 G 14 77 77 G G A . n A 1 15 U 15 78 78 U U A . n A 1 16 G 16 79 79 G G A . n A 1 17 A 17 80 80 A A A . n A 1 18 A 18 81 81 A A A . n A 1 19 C 19 82 82 C C A . n A 1 20 C 20 83 83 C C A . n A 1 21 A 21 84 84 A A A . n A 1 22 C 22 85 85 C C A . n A 1 23 C 23 86 86 C C A . n A 1 24 A 24 87 87 A A A . n A 1 25 U 25 88 88 U U A . n A 1 26 G 26 89 89 G G A . n A 1 27 U 27 90 90 U U A . n A 1 28 G 28 91 91 G G A . n A 1 29 G 29 92 92 G G A . n # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 5LSN _exptl.crystals_number ? _exptl.details ? _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 5LSN _struct.title 'SINEB2 element of the long non-coding RNA activator of translation AS Uchl1' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 5LSN _struct_keywords.text 'RNA SINEUP hairpin, RNA' _struct_keywords.pdbx_keywords RNA # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 5LSN _struct_ref.pdbx_db_accession 5LSN _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 5LSN _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 29 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 5LSN _struct_ref_seq.db_align_beg 64 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 92 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 64 _struct_ref_seq.pdbx_auth_seq_align_end 92 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 0 ? 1 MORE 0 ? 1 'SSA (A^2)' 5610 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A C 1 N3 ? ? ? 1_555 A G 29 N1 ? ? A C 64 A G 92 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A C 1 N4 ? ? ? 1_555 A G 29 O6 ? ? A C 64 A G 92 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A C 1 O2 ? ? ? 1_555 A G 29 N2 ? ? A C 64 A G 92 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A C 2 N3 ? ? ? 1_555 A G 28 N1 ? ? A C 65 A G 91 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A C 2 N4 ? ? ? 1_555 A G 28 O6 ? ? A C 65 A G 91 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A C 2 O2 ? ? ? 1_555 A G 28 N2 ? ? A C 65 A G 91 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A U 3 N3 ? ? ? 1_555 A U 27 O4 ? ? A U 66 A U 90 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog8 hydrog ? ? A U 3 O2 ? ? ? 1_555 A U 27 N3 ? ? A U 66 A U 90 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog9 hydrog ? ? A C 4 N3 ? ? ? 1_555 A G 26 N1 ? ? A C 67 A G 89 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A C 4 N4 ? ? ? 1_555 A G 26 O6 ? ? A C 67 A G 89 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A C 4 O2 ? ? ? 1_555 A G 26 N2 ? ? A C 67 A G 89 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A G 5 N1 ? ? ? 1_555 A U 25 O2 ? ? A G 68 A U 88 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog13 hydrog ? ? A G 5 O6 ? ? ? 1_555 A U 25 N3 ? ? A G 68 A U 88 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog14 hydrog ? ? A U 6 N3 ? ? ? 1_555 A A 24 N1 ? ? A U 69 A A 87 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A U 6 O4 ? ? ? 1_555 A A 24 N6 ? ? A U 69 A A 87 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A G 7 N1 ? ? ? 1_555 A C 23 N3 ? ? A G 70 A C 86 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A G 7 N2 ? ? ? 1_555 A C 23 O2 ? ? A G 70 A C 86 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A G 7 O6 ? ? ? 1_555 A C 23 N4 ? ? A G 70 A C 86 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A G 8 N1 ? ? ? 1_555 A C 22 N3 ? ? A G 71 A C 85 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A G 8 N2 ? ? ? 1_555 A C 22 O2 ? ? A G 71 A C 85 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A G 8 O6 ? ? ? 1_555 A C 22 N4 ? ? A G 71 A C 85 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A U 9 N3 ? ? ? 1_555 A A 21 N1 ? ? A U 72 A A 84 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A U 9 O4 ? ? ? 1_555 A A 21 N6 ? ? A U 72 A A 84 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A G 10 N1 ? ? ? 1_555 A C 20 N3 ? ? A G 73 A C 83 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A G 10 N2 ? ? ? 1_555 A C 20 O2 ? ? A G 73 A C 83 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A G 10 O6 ? ? ? 1_555 A C 20 N4 ? ? A G 73 A C 83 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A G 11 N1 ? ? ? 1_555 A C 19 N3 ? ? A G 74 A C 82 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A G 11 N2 ? ? ? 1_555 A C 19 O2 ? ? A G 74 A C 82 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A G 11 O6 ? ? ? 1_555 A C 19 N4 ? ? A G 74 A C 82 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A U 12 N3 ? ? ? 1_555 A A 18 N1 ? ? A U 75 A A 81 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A U 12 O4 ? ? ? 1_555 A A 18 N6 ? ? A U 75 A A 81 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A U 13 N3 ? ? ? 1_555 A A 17 N1 ? ? A U 76 A A 80 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A U 13 O4 ? ? ? 1_555 A A 17 N6 ? ? A U 76 A A 80 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A G 14 N2 ? ? ? 1_555 A G 16 N7 ? ? A G 77 A G 79 1_555 ? ? ? ? ? ? 'G-G MISPAIR' ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 N3 A C 64 ? ? C2 A C 64 ? ? O2 A C 64 ? ? 116.79 121.90 -5.11 0.70 N 2 1 "O4'" A C 65 ? ? "C1'" A C 65 ? ? N1 A C 65 ? ? 113.06 108.50 4.56 0.70 N 3 1 N3 A C 65 ? ? C2 A C 65 ? ? O2 A C 65 ? ? 116.79 121.90 -5.11 0.70 N 4 1 "O4'" A C 67 ? ? "C1'" A C 67 ? ? N1 A C 67 ? ? 112.85 108.50 4.35 0.70 N 5 1 N3 A C 67 ? ? C2 A C 67 ? ? O2 A C 67 ? ? 117.11 121.90 -4.79 0.70 N 6 1 "O4'" A U 69 ? ? "C1'" A U 69 ? ? N1 A U 69 ? ? 112.83 108.50 4.33 0.70 N 7 1 "O4'" A U 72 ? ? "C1'" A U 72 ? ? N1 A U 72 ? ? 113.01 108.50 4.51 0.70 N 8 1 "O4'" A U 76 ? ? "C1'" A U 76 ? ? N1 A U 76 ? ? 113.63 108.50 5.13 0.70 N 9 1 N3 A G 79 ? ? C4 A G 79 ? ? C5 A G 79 ? ? 125.57 128.60 -3.03 0.50 N 10 1 "O4'" A A 80 ? ? "C1'" A A 80 ? ? N9 A A 80 ? ? 113.45 108.50 4.95 0.70 N 11 1 C5 A A 80 ? ? C6 A A 80 ? ? N1 A A 80 ? ? 121.23 117.70 3.53 0.50 N 12 1 N1 A A 80 ? ? C6 A A 80 ? ? N6 A A 80 ? ? 114.39 118.60 -4.21 0.60 N 13 1 C4 A A 81 ? ? C5 A A 81 ? ? C6 A A 81 ? ? 113.95 117.00 -3.05 0.50 N 14 1 C5 A A 81 ? ? C6 A A 81 ? ? N1 A A 81 ? ? 121.52 117.70 3.82 0.50 N 15 1 N1 A A 81 ? ? C6 A A 81 ? ? N6 A A 81 ? ? 113.99 118.60 -4.61 0.60 N 16 1 N3 A C 82 ? ? C2 A C 82 ? ? O2 A C 82 ? ? 116.96 121.90 -4.94 0.70 N 17 1 N3 A C 83 ? ? C2 A C 83 ? ? O2 A C 83 ? ? 116.80 121.90 -5.10 0.70 N 18 1 C4 A A 84 ? ? C5 A A 84 ? ? C6 A A 84 ? ? 113.86 117.00 -3.14 0.50 N 19 1 C5 A A 84 ? ? C6 A A 84 ? ? N1 A A 84 ? ? 121.18 117.70 3.48 0.50 N 20 1 N1 A A 84 ? ? C6 A A 84 ? ? N6 A A 84 ? ? 113.76 118.60 -4.84 0.60 N 21 1 "O4'" A C 85 ? ? "C1'" A C 85 ? ? N1 A C 85 ? ? 112.73 108.50 4.23 0.70 N 22 1 N3 A C 85 ? ? C2 A C 85 ? ? O2 A C 85 ? ? 116.73 121.90 -5.17 0.70 N 23 1 N3 A C 86 ? ? C2 A C 86 ? ? O2 A C 86 ? ? 116.77 121.90 -5.13 0.70 N 24 1 C4 A A 87 ? ? C5 A A 87 ? ? C6 A A 87 ? ? 113.81 117.00 -3.19 0.50 N 25 1 C5 A A 87 ? ? C6 A A 87 ? ? N1 A A 87 ? ? 121.42 117.70 3.72 0.50 N 26 1 N1 A A 87 ? ? C6 A A 87 ? ? N6 A A 87 ? ? 113.92 118.60 -4.68 0.60 N 27 1 "O4'" A U 88 ? ? "C1'" A U 88 ? ? N1 A U 88 ? ? 112.94 108.50 4.44 0.70 N 28 1 "O4'" A U 90 ? ? "C1'" A U 90 ? ? N1 A U 90 ? ? 112.94 108.50 4.44 0.70 N 29 2 N3 A C 64 ? ? C2 A C 64 ? ? O2 A C 64 ? ? 116.95 121.90 -4.95 0.70 N 30 2 "O4'" A C 65 ? ? "C1'" A C 65 ? ? N1 A C 65 ? ? 112.94 108.50 4.44 0.70 N 31 2 N3 A C 65 ? ? C2 A C 65 ? ? O2 A C 65 ? ? 116.84 121.90 -5.06 0.70 N 32 2 "O4'" A C 67 ? ? "C1'" A C 67 ? ? N1 A C 67 ? ? 112.92 108.50 4.42 0.70 N 33 2 N3 A C 67 ? ? C2 A C 67 ? ? O2 A C 67 ? ? 116.98 121.90 -4.92 0.70 N 34 2 "O4'" A U 69 ? ? "C1'" A U 69 ? ? N1 A U 69 ? ? 112.76 108.50 4.26 0.70 N 35 2 "O4'" A U 72 ? ? "C1'" A U 72 ? ? N1 A U 72 ? ? 112.87 108.50 4.37 0.70 N 36 2 "O4'" A U 76 ? ? "C1'" A U 76 ? ? N1 A U 76 ? ? 113.66 108.50 5.16 0.70 N 37 2 N3 A G 79 ? ? C4 A G 79 ? ? C5 A G 79 ? ? 125.55 128.60 -3.05 0.50 N 38 2 "O4'" A A 80 ? ? "C1'" A A 80 ? ? N9 A A 80 ? ? 113.23 108.50 4.73 0.70 N 39 2 C5 A A 80 ? ? C6 A A 80 ? ? N1 A A 80 ? ? 121.38 117.70 3.68 0.50 N 40 2 N1 A A 80 ? ? C6 A A 80 ? ? N6 A A 80 ? ? 114.27 118.60 -4.33 0.60 N 41 2 C5 A A 81 ? ? C6 A A 81 ? ? N1 A A 81 ? ? 121.58 117.70 3.88 0.50 N 42 2 N1 A A 81 ? ? C6 A A 81 ? ? N6 A A 81 ? ? 114.05 118.60 -4.55 0.60 N 43 2 N3 A C 82 ? ? C2 A C 82 ? ? O2 A C 82 ? ? 117.03 121.90 -4.87 0.70 N 44 2 N3 A C 83 ? ? C2 A C 83 ? ? O2 A C 83 ? ? 116.88 121.90 -5.02 0.70 N 45 2 C4 A A 84 ? ? C5 A A 84 ? ? C6 A A 84 ? ? 113.92 117.00 -3.08 0.50 N 46 2 C5 A A 84 ? ? C6 A A 84 ? ? N1 A A 84 ? ? 121.20 117.70 3.50 0.50 N 47 2 N1 A A 84 ? ? C6 A A 84 ? ? N6 A A 84 ? ? 113.82 118.60 -4.78 0.60 N 48 2 N3 A C 85 ? ? C2 A C 85 ? ? O2 A C 85 ? ? 116.81 121.90 -5.09 0.70 N 49 2 N3 A C 86 ? ? C2 A C 86 ? ? O2 A C 86 ? ? 116.87 121.90 -5.03 0.70 N 50 2 C4 A A 87 ? ? C5 A A 87 ? ? C6 A A 87 ? ? 113.91 117.00 -3.09 0.50 N 51 2 C5 A A 87 ? ? C6 A A 87 ? ? N1 A A 87 ? ? 121.25 117.70 3.55 0.50 N 52 2 N1 A A 87 ? ? C6 A A 87 ? ? N6 A A 87 ? ? 113.88 118.60 -4.72 0.60 N 53 2 "O4'" A U 88 ? ? "C1'" A U 88 ? ? N1 A U 88 ? ? 112.89 108.50 4.39 0.70 N 54 2 "O4'" A U 90 ? ? "C1'" A U 90 ? ? N1 A U 90 ? ? 112.85 108.50 4.35 0.70 N 55 3 N3 A C 64 ? ? C2 A C 64 ? ? O2 A C 64 ? ? 116.80 121.90 -5.10 0.70 N 56 3 "O4'" A C 65 ? ? "C1'" A C 65 ? ? N1 A C 65 ? ? 113.02 108.50 4.52 0.70 N 57 3 N3 A C 65 ? ? C2 A C 65 ? ? O2 A C 65 ? ? 116.65 121.90 -5.25 0.70 N 58 3 "O4'" A C 67 ? ? "C1'" A C 67 ? ? N1 A C 67 ? ? 112.88 108.50 4.38 0.70 N 59 3 N3 A C 67 ? ? C2 A C 67 ? ? O2 A C 67 ? ? 117.21 121.90 -4.69 0.70 N 60 3 "O4'" A U 69 ? ? "C1'" A U 69 ? ? N1 A U 69 ? ? 112.74 108.50 4.24 0.70 N 61 3 "O4'" A U 72 ? ? "C1'" A U 72 ? ? N1 A U 72 ? ? 112.86 108.50 4.36 0.70 N 62 3 "O4'" A U 76 ? ? "C1'" A U 76 ? ? N1 A U 76 ? ? 113.72 108.50 5.22 0.70 N 63 3 N3 A G 79 ? ? C4 A G 79 ? ? C5 A G 79 ? ? 125.49 128.60 -3.11 0.50 N 64 3 "O4'" A A 80 ? ? "C1'" A A 80 ? ? N9 A A 80 ? ? 113.23 108.50 4.73 0.70 N 65 3 C5 A A 80 ? ? C6 A A 80 ? ? N1 A A 80 ? ? 121.39 117.70 3.69 0.50 N 66 3 N1 A A 80 ? ? C6 A A 80 ? ? N6 A A 80 ? ? 114.22 118.60 -4.38 0.60 N 67 3 C5 A A 81 ? ? C6 A A 81 ? ? N1 A A 81 ? ? 121.41 117.70 3.71 0.50 N 68 3 N1 A A 81 ? ? C6 A A 81 ? ? N6 A A 81 ? ? 114.10 118.60 -4.50 0.60 N 69 3 N3 A C 82 ? ? C2 A C 82 ? ? O2 A C 82 ? ? 116.92 121.90 -4.98 0.70 N 70 3 N3 A C 83 ? ? C2 A C 83 ? ? O2 A C 83 ? ? 116.73 121.90 -5.17 0.70 N 71 3 C4 A A 84 ? ? C5 A A 84 ? ? C6 A A 84 ? ? 113.88 117.00 -3.12 0.50 N 72 3 C5 A A 84 ? ? C6 A A 84 ? ? N1 A A 84 ? ? 121.24 117.70 3.54 0.50 N 73 3 N1 A A 84 ? ? C6 A A 84 ? ? N6 A A 84 ? ? 113.82 118.60 -4.78 0.60 N 74 3 N3 A C 85 ? ? C2 A C 85 ? ? O2 A C 85 ? ? 116.77 121.90 -5.13 0.70 N 75 3 "O4'" A C 86 ? ? "C1'" A C 86 ? ? N1 A C 86 ? ? 112.74 108.50 4.24 0.70 N 76 3 N3 A C 86 ? ? C2 A C 86 ? ? O2 A C 86 ? ? 116.84 121.90 -5.06 0.70 N 77 3 C4 A A 87 ? ? C5 A A 87 ? ? C6 A A 87 ? ? 113.88 117.00 -3.12 0.50 N 78 3 C5 A A 87 ? ? C6 A A 87 ? ? N1 A A 87 ? ? 121.38 117.70 3.68 0.50 N 79 3 N1 A A 87 ? ? C6 A A 87 ? ? N6 A A 87 ? ? 113.80 118.60 -4.80 0.60 N 80 3 "O4'" A U 88 ? ? "C1'" A U 88 ? ? N1 A U 88 ? ? 112.80 108.50 4.30 0.70 N 81 3 "O4'" A U 90 ? ? "C1'" A U 90 ? ? N1 A U 90 ? ? 112.91 108.50 4.41 0.70 N 82 4 N3 A C 64 ? ? C2 A C 64 ? ? O2 A C 64 ? ? 116.84 121.90 -5.06 0.70 N 83 4 "O4'" A C 65 ? ? "C1'" A C 65 ? ? N1 A C 65 ? ? 112.93 108.50 4.43 0.70 N 84 4 N3 A C 65 ? ? C2 A C 65 ? ? O2 A C 65 ? ? 116.71 121.90 -5.19 0.70 N 85 4 "O4'" A C 67 ? ? "C1'" A C 67 ? ? N1 A C 67 ? ? 112.85 108.50 4.35 0.70 N 86 4 N3 A C 67 ? ? C2 A C 67 ? ? O2 A C 67 ? ? 117.16 121.90 -4.74 0.70 N 87 4 "O4'" A U 69 ? ? "C1'" A U 69 ? ? N1 A U 69 ? ? 112.82 108.50 4.32 0.70 N 88 4 "O4'" A U 72 ? ? "C1'" A U 72 ? ? N1 A U 72 ? ? 112.93 108.50 4.43 0.70 N 89 4 "O4'" A U 76 ? ? "C1'" A U 76 ? ? N1 A U 76 ? ? 113.67 108.50 5.17 0.70 N 90 4 N3 A G 79 ? ? C4 A G 79 ? ? C5 A G 79 ? ? 125.52 128.60 -3.08 0.50 N 91 4 "O4'" A A 80 ? ? "C1'" A A 80 ? ? N9 A A 80 ? ? 113.39 108.50 4.89 0.70 N 92 4 C5 A A 80 ? ? C6 A A 80 ? ? N1 A A 80 ? ? 121.24 117.70 3.54 0.50 N 93 4 N1 A A 80 ? ? C6 A A 80 ? ? N6 A A 80 ? ? 114.36 118.60 -4.24 0.60 N 94 4 C5 A A 81 ? ? C6 A A 81 ? ? N1 A A 81 ? ? 121.48 117.70 3.78 0.50 N 95 4 N1 A A 81 ? ? C6 A A 81 ? ? N6 A A 81 ? ? 113.96 118.60 -4.64 0.60 N 96 4 N3 A C 82 ? ? C2 A C 82 ? ? O2 A C 82 ? ? 116.84 121.90 -5.06 0.70 N 97 4 N3 A C 83 ? ? C2 A C 83 ? ? O2 A C 83 ? ? 116.87 121.90 -5.03 0.70 N 98 4 C4 A A 84 ? ? C5 A A 84 ? ? C6 A A 84 ? ? 113.89 117.00 -3.11 0.50 N 99 4 C5 A A 84 ? ? C6 A A 84 ? ? N1 A A 84 ? ? 121.19 117.70 3.49 0.50 N 100 4 N1 A A 84 ? ? C6 A A 84 ? ? N6 A A 84 ? ? 113.73 118.60 -4.87 0.60 N 101 4 N3 A C 85 ? ? C2 A C 85 ? ? O2 A C 85 ? ? 116.80 121.90 -5.10 0.70 N 102 4 "O4'" A C 86 ? ? "C1'" A C 86 ? ? N1 A C 86 ? ? 112.72 108.50 4.22 0.70 N 103 4 N3 A C 86 ? ? C2 A C 86 ? ? O2 A C 86 ? ? 116.79 121.90 -5.11 0.70 N 104 4 C4 A A 87 ? ? C5 A A 87 ? ? C6 A A 87 ? ? 113.87 117.00 -3.13 0.50 N 105 4 C5 A A 87 ? ? C6 A A 87 ? ? N1 A A 87 ? ? 121.41 117.70 3.71 0.50 N 106 4 N1 A A 87 ? ? C6 A A 87 ? ? N6 A A 87 ? ? 113.82 118.60 -4.78 0.60 N 107 4 "O4'" A U 88 ? ? "C1'" A U 88 ? ? N1 A U 88 ? ? 112.81 108.50 4.31 0.70 N 108 4 "O4'" A U 90 ? ? "C1'" A U 90 ? ? N1 A U 90 ? ? 113.00 108.50 4.50 0.70 N 109 5 N3 A C 64 ? ? C2 A C 64 ? ? O2 A C 64 ? ? 116.70 121.90 -5.20 0.70 N 110 5 "O4'" A C 65 ? ? "C1'" A C 65 ? ? N1 A C 65 ? ? 113.16 108.50 4.66 0.70 N 111 5 N3 A C 65 ? ? C2 A C 65 ? ? O2 A C 65 ? ? 116.87 121.90 -5.03 0.70 N 112 5 "O4'" A C 67 ? ? "C1'" A C 67 ? ? N1 A C 67 ? ? 112.82 108.50 4.32 0.70 N 113 5 N3 A C 67 ? ? C2 A C 67 ? ? O2 A C 67 ? ? 117.05 121.90 -4.85 0.70 N 114 5 "O4'" A U 69 ? ? "C1'" A U 69 ? ? N1 A U 69 ? ? 112.96 108.50 4.46 0.70 N 115 5 "O4'" A U 72 ? ? "C1'" A U 72 ? ? N1 A U 72 ? ? 113.01 108.50 4.51 0.70 N 116 5 "O4'" A U 76 ? ? "C1'" A U 76 ? ? N1 A U 76 ? ? 113.48 108.50 4.98 0.70 N 117 5 "O4'" A G 79 ? ? "C1'" A G 79 ? ? N9 A G 79 ? ? 114.79 108.50 6.29 0.70 N 118 5 "O4'" A A 80 ? ? "C1'" A A 80 ? ? N9 A A 80 ? ? 114.14 108.50 5.64 0.70 N 119 5 C5 A A 80 ? ? C6 A A 80 ? ? N1 A A 80 ? ? 121.62 117.70 3.92 0.50 N 120 5 N1 A A 80 ? ? C6 A A 80 ? ? N6 A A 80 ? ? 114.19 118.60 -4.41 0.60 N 121 5 C5 A A 81 ? ? C6 A A 81 ? ? N1 A A 81 ? ? 121.40 117.70 3.70 0.50 N 122 5 N1 A A 81 ? ? C6 A A 81 ? ? N6 A A 81 ? ? 114.04 118.60 -4.56 0.60 N 123 5 N3 A C 82 ? ? C2 A C 82 ? ? O2 A C 82 ? ? 117.01 121.90 -4.89 0.70 N 124 5 N3 A C 83 ? ? C2 A C 83 ? ? O2 A C 83 ? ? 116.81 121.90 -5.09 0.70 N 125 5 C4 A A 84 ? ? C5 A A 84 ? ? C6 A A 84 ? ? 113.89 117.00 -3.11 0.50 N 126 5 C5 A A 84 ? ? C6 A A 84 ? ? N1 A A 84 ? ? 121.25 117.70 3.55 0.50 N 127 5 N1 A A 84 ? ? C6 A A 84 ? ? N6 A A 84 ? ? 113.74 118.60 -4.86 0.60 N 128 5 "O4'" A C 85 ? ? "C1'" A C 85 ? ? N1 A C 85 ? ? 112.73 108.50 4.23 0.70 N 129 5 N3 A C 85 ? ? C2 A C 85 ? ? O2 A C 85 ? ? 116.83 121.90 -5.07 0.70 N 130 5 N3 A C 86 ? ? C2 A C 86 ? ? O2 A C 86 ? ? 116.66 121.90 -5.24 0.70 N 131 5 C4 A A 87 ? ? C5 A A 87 ? ? C6 A A 87 ? ? 113.86 117.00 -3.14 0.50 N 132 5 C5 A A 87 ? ? C6 A A 87 ? ? N1 A A 87 ? ? 121.40 117.70 3.70 0.50 N 133 5 N1 A A 87 ? ? C6 A A 87 ? ? N6 A A 87 ? ? 113.78 118.60 -4.82 0.60 N 134 5 "O4'" A U 88 ? ? "C1'" A U 88 ? ? N1 A U 88 ? ? 112.86 108.50 4.36 0.70 N 135 5 "O4'" A U 90 ? ? "C1'" A U 90 ? ? N1 A U 90 ? ? 113.05 108.50 4.55 0.70 N 136 6 N3 A C 64 ? ? C2 A C 64 ? ? O2 A C 64 ? ? 116.79 121.90 -5.11 0.70 N 137 6 "O4'" A C 65 ? ? "C1'" A C 65 ? ? N1 A C 65 ? ? 113.00 108.50 4.50 0.70 N 138 6 N3 A C 65 ? ? C2 A C 65 ? ? O2 A C 65 ? ? 116.75 121.90 -5.15 0.70 N 139 6 "O4'" A C 67 ? ? "C1'" A C 67 ? ? N1 A C 67 ? ? 112.99 108.50 4.49 0.70 N 140 6 N3 A C 67 ? ? C2 A C 67 ? ? O2 A C 67 ? ? 117.15 121.90 -4.75 0.70 N 141 6 "O4'" A U 69 ? ? "C1'" A U 69 ? ? N1 A U 69 ? ? 112.73 108.50 4.23 0.70 N 142 6 "O4'" A U 72 ? ? "C1'" A U 72 ? ? N1 A U 72 ? ? 112.94 108.50 4.44 0.70 N 143 6 "O4'" A U 76 ? ? "C1'" A U 76 ? ? N1 A U 76 ? ? 113.71 108.50 5.21 0.70 N 144 6 "O4'" A G 79 ? ? "C1'" A G 79 ? ? N9 A G 79 ? ? 114.83 108.50 6.33 0.70 N 145 6 "C1'" A A 80 ? ? "O4'" A A 80 ? ? "C4'" A A 80 ? ? 105.49 109.70 -4.21 0.70 N 146 6 "O4'" A A 80 ? ? "C1'" A A 80 ? ? N9 A A 80 ? ? 114.22 108.50 5.72 0.70 N 147 6 C5 A A 80 ? ? C6 A A 80 ? ? N1 A A 80 ? ? 121.43 117.70 3.73 0.50 N 148 6 N1 A A 80 ? ? C6 A A 80 ? ? N6 A A 80 ? ? 114.38 118.60 -4.22 0.60 N 149 6 C5 A A 81 ? ? C6 A A 81 ? ? N1 A A 81 ? ? 121.36 117.70 3.66 0.50 N 150 6 N1 A A 81 ? ? C6 A A 81 ? ? N6 A A 81 ? ? 114.04 118.60 -4.56 0.60 N 151 6 N3 A C 82 ? ? C2 A C 82 ? ? O2 A C 82 ? ? 116.95 121.90 -4.95 0.70 N 152 6 N3 A C 83 ? ? C2 A C 83 ? ? O2 A C 83 ? ? 116.83 121.90 -5.07 0.70 N 153 6 C4 A A 84 ? ? C5 A A 84 ? ? C6 A A 84 ? ? 113.83 117.00 -3.17 0.50 N 154 6 C5 A A 84 ? ? C6 A A 84 ? ? N1 A A 84 ? ? 121.21 117.70 3.51 0.50 N 155 6 N1 A A 84 ? ? C6 A A 84 ? ? N6 A A 84 ? ? 113.85 118.60 -4.75 0.60 N 156 6 N3 A C 85 ? ? C2 A C 85 ? ? O2 A C 85 ? ? 116.91 121.90 -4.99 0.70 N 157 6 N3 A C 86 ? ? C2 A C 86 ? ? O2 A C 86 ? ? 116.82 121.90 -5.08 0.70 N 158 6 C4 A A 87 ? ? C5 A A 87 ? ? C6 A A 87 ? ? 113.84 117.00 -3.16 0.50 N 159 6 C5 A A 87 ? ? C6 A A 87 ? ? N1 A A 87 ? ? 121.36 117.70 3.66 0.50 N 160 6 N1 A A 87 ? ? C6 A A 87 ? ? N6 A A 87 ? ? 113.64 118.60 -4.96 0.60 N 161 6 "O4'" A U 88 ? ? "C1'" A U 88 ? ? N1 A U 88 ? ? 112.86 108.50 4.36 0.70 N 162 6 "O4'" A U 90 ? ? "C1'" A U 90 ? ? N1 A U 90 ? ? 112.89 108.50 4.39 0.70 N 163 7 N3 A C 64 ? ? C2 A C 64 ? ? O2 A C 64 ? ? 116.84 121.90 -5.06 0.70 N 164 7 "O4'" A C 65 ? ? "C1'" A C 65 ? ? N1 A C 65 ? ? 113.05 108.50 4.55 0.70 N 165 7 N3 A C 65 ? ? C2 A C 65 ? ? O2 A C 65 ? ? 116.72 121.90 -5.18 0.70 N 166 7 "O4'" A C 67 ? ? "C1'" A C 67 ? ? N1 A C 67 ? ? 112.84 108.50 4.34 0.70 N 167 7 N3 A C 67 ? ? C2 A C 67 ? ? O2 A C 67 ? ? 117.04 121.90 -4.86 0.70 N 168 7 "O4'" A U 69 ? ? "C1'" A U 69 ? ? N1 A U 69 ? ? 112.77 108.50 4.27 0.70 N 169 7 "O4'" A U 72 ? ? "C1'" A U 72 ? ? N1 A U 72 ? ? 112.96 108.50 4.46 0.70 N 170 7 "O4'" A U 76 ? ? "C1'" A U 76 ? ? N1 A U 76 ? ? 113.58 108.50 5.08 0.70 N 171 7 N3 A G 79 ? ? C4 A G 79 ? ? C5 A G 79 ? ? 125.50 128.60 -3.10 0.50 N 172 7 "O4'" A A 80 ? ? "C1'" A A 80 ? ? N9 A A 80 ? ? 113.33 108.50 4.83 0.70 N 173 7 C5 A A 80 ? ? C6 A A 80 ? ? N1 A A 80 ? ? 121.37 117.70 3.67 0.50 N 174 7 N1 A A 80 ? ? C6 A A 80 ? ? N6 A A 80 ? ? 114.27 118.60 -4.33 0.60 N 175 7 C5 A A 81 ? ? C6 A A 81 ? ? N1 A A 81 ? ? 121.48 117.70 3.78 0.50 N 176 7 N1 A A 81 ? ? C6 A A 81 ? ? N6 A A 81 ? ? 114.20 118.60 -4.40 0.60 N 177 7 N3 A C 82 ? ? C2 A C 82 ? ? O2 A C 82 ? ? 116.88 121.90 -5.02 0.70 N 178 7 N3 A C 83 ? ? C2 A C 83 ? ? O2 A C 83 ? ? 116.85 121.90 -5.05 0.70 N 179 7 C4 A A 84 ? ? C5 A A 84 ? ? C6 A A 84 ? ? 113.86 117.00 -3.14 0.50 N 180 7 C5 A A 84 ? ? C6 A A 84 ? ? N1 A A 84 ? ? 121.22 117.70 3.52 0.50 N 181 7 N1 A A 84 ? ? C6 A A 84 ? ? N6 A A 84 ? ? 113.75 118.60 -4.85 0.60 N 182 7 N3 A C 85 ? ? C2 A C 85 ? ? O2 A C 85 ? ? 116.75 121.90 -5.15 0.70 N 183 7 N3 A C 86 ? ? C2 A C 86 ? ? O2 A C 86 ? ? 116.80 121.90 -5.10 0.70 N 184 7 C4 A A 87 ? ? C5 A A 87 ? ? C6 A A 87 ? ? 113.84 117.00 -3.16 0.50 N 185 7 C5 A A 87 ? ? C6 A A 87 ? ? N1 A A 87 ? ? 121.35 117.70 3.65 0.50 N 186 7 N1 A A 87 ? ? C6 A A 87 ? ? N6 A A 87 ? ? 113.73 118.60 -4.87 0.60 N 187 7 "O4'" A U 88 ? ? "C1'" A U 88 ? ? N1 A U 88 ? ? 112.82 108.50 4.32 0.70 N 188 7 "O4'" A U 90 ? ? "C1'" A U 90 ? ? N1 A U 90 ? ? 112.97 108.50 4.47 0.70 N 189 8 N3 A C 64 ? ? C2 A C 64 ? ? O2 A C 64 ? ? 116.77 121.90 -5.13 0.70 N 190 8 "O4'" A C 65 ? ? "C1'" A C 65 ? ? N1 A C 65 ? ? 113.00 108.50 4.50 0.70 N 191 8 N3 A C 65 ? ? C2 A C 65 ? ? O2 A C 65 ? ? 116.67 121.90 -5.23 0.70 N 192 8 "O4'" A C 67 ? ? "C1'" A C 67 ? ? N1 A C 67 ? ? 112.98 108.50 4.48 0.70 N 193 8 N3 A C 67 ? ? C2 A C 67 ? ? O2 A C 67 ? ? 117.20 121.90 -4.70 0.70 N 194 8 "O4'" A U 69 ? ? "C1'" A U 69 ? ? N1 A U 69 ? ? 112.85 108.50 4.35 0.70 N 195 8 "O4'" A U 72 ? ? "C1'" A U 72 ? ? N1 A U 72 ? ? 112.84 108.50 4.34 0.70 N 196 8 "O4'" A U 76 ? ? "C1'" A U 76 ? ? N1 A U 76 ? ? 113.61 108.50 5.11 0.70 N 197 8 N3 A G 79 ? ? C4 A G 79 ? ? C5 A G 79 ? ? 125.58 128.60 -3.02 0.50 N 198 8 "O4'" A A 80 ? ? "C1'" A A 80 ? ? N9 A A 80 ? ? 113.32 108.50 4.82 0.70 N 199 8 C5 A A 80 ? ? C6 A A 80 ? ? N1 A A 80 ? ? 121.33 117.70 3.63 0.50 N 200 8 N1 A A 80 ? ? C6 A A 80 ? ? N6 A A 80 ? ? 114.32 118.60 -4.28 0.60 N 201 8 C5 A A 81 ? ? C6 A A 81 ? ? N1 A A 81 ? ? 121.43 117.70 3.73 0.50 N 202 8 N1 A A 81 ? ? C6 A A 81 ? ? N6 A A 81 ? ? 114.03 118.60 -4.57 0.60 N 203 8 N3 A C 82 ? ? C2 A C 82 ? ? O2 A C 82 ? ? 116.97 121.90 -4.93 0.70 N 204 8 N3 A C 83 ? ? C2 A C 83 ? ? O2 A C 83 ? ? 116.82 121.90 -5.08 0.70 N 205 8 C4 A A 84 ? ? C5 A A 84 ? ? C6 A A 84 ? ? 113.90 117.00 -3.10 0.50 N 206 8 C5 A A 84 ? ? C6 A A 84 ? ? N1 A A 84 ? ? 121.14 117.70 3.44 0.50 N 207 8 N1 A A 84 ? ? C6 A A 84 ? ? N6 A A 84 ? ? 113.77 118.60 -4.83 0.60 N 208 8 N3 A C 85 ? ? C2 A C 85 ? ? O2 A C 85 ? ? 116.80 121.90 -5.10 0.70 N 209 8 N3 A C 86 ? ? C2 A C 86 ? ? O2 A C 86 ? ? 116.82 121.90 -5.08 0.70 N 210 8 C4 A A 87 ? ? C5 A A 87 ? ? C6 A A 87 ? ? 113.87 117.00 -3.13 0.50 N 211 8 C5 A A 87 ? ? C6 A A 87 ? ? N1 A A 87 ? ? 121.26 117.70 3.56 0.50 N 212 8 N1 A A 87 ? ? C6 A A 87 ? ? N6 A A 87 ? ? 113.86 118.60 -4.74 0.60 N 213 8 "O4'" A U 88 ? ? "C1'" A U 88 ? ? N1 A U 88 ? ? 112.80 108.50 4.30 0.70 N 214 8 "O4'" A U 90 ? ? "C1'" A U 90 ? ? N1 A U 90 ? ? 112.98 108.50 4.48 0.70 N 215 9 N3 A C 64 ? ? C2 A C 64 ? ? O2 A C 64 ? ? 116.87 121.90 -5.03 0.70 N 216 9 "O4'" A C 65 ? ? "C1'" A C 65 ? ? N1 A C 65 ? ? 113.01 108.50 4.51 0.70 N 217 9 N3 A C 65 ? ? C2 A C 65 ? ? O2 A C 65 ? ? 116.76 121.90 -5.14 0.70 N 218 9 "O4'" A C 67 ? ? "C1'" A C 67 ? ? N1 A C 67 ? ? 112.91 108.50 4.41 0.70 N 219 9 N3 A C 67 ? ? C2 A C 67 ? ? O2 A C 67 ? ? 117.12 121.90 -4.78 0.70 N 220 9 "O4'" A U 69 ? ? "C1'" A U 69 ? ? N1 A U 69 ? ? 112.87 108.50 4.37 0.70 N 221 9 "O4'" A U 72 ? ? "C1'" A U 72 ? ? N1 A U 72 ? ? 112.89 108.50 4.39 0.70 N 222 9 "O4'" A U 76 ? ? "C1'" A U 76 ? ? N1 A U 76 ? ? 113.58 108.50 5.08 0.70 N 223 9 N3 A G 79 ? ? C4 A G 79 ? ? C5 A G 79 ? ? 125.50 128.60 -3.10 0.50 N 224 9 "O4'" A A 80 ? ? "C1'" A A 80 ? ? N9 A A 80 ? ? 113.25 108.50 4.75 0.70 N 225 9 C5 A A 80 ? ? C6 A A 80 ? ? N1 A A 80 ? ? 121.34 117.70 3.64 0.50 N 226 9 N1 A A 80 ? ? C6 A A 80 ? ? N6 A A 80 ? ? 114.34 118.60 -4.26 0.60 N 227 9 C4 A A 81 ? ? C5 A A 81 ? ? C6 A A 81 ? ? 113.93 117.00 -3.07 0.50 N 228 9 C5 A A 81 ? ? C6 A A 81 ? ? N1 A A 81 ? ? 121.47 117.70 3.77 0.50 N 229 9 N1 A A 81 ? ? C6 A A 81 ? ? N6 A A 81 ? ? 113.87 118.60 -4.73 0.60 N 230 9 N3 A C 82 ? ? C2 A C 82 ? ? O2 A C 82 ? ? 117.02 121.90 -4.88 0.70 N 231 9 N3 A C 83 ? ? C2 A C 83 ? ? O2 A C 83 ? ? 116.93 121.90 -4.97 0.70 N 232 9 C4 A A 84 ? ? C5 A A 84 ? ? C6 A A 84 ? ? 113.82 117.00 -3.18 0.50 N 233 9 C5 A A 84 ? ? C6 A A 84 ? ? N1 A A 84 ? ? 121.23 117.70 3.53 0.50 N 234 9 N1 A A 84 ? ? C6 A A 84 ? ? N6 A A 84 ? ? 113.87 118.60 -4.73 0.60 N 235 9 N3 A C 85 ? ? C2 A C 85 ? ? O2 A C 85 ? ? 116.77 121.90 -5.13 0.70 N 236 9 N3 A C 86 ? ? C2 A C 86 ? ? O2 A C 86 ? ? 116.75 121.90 -5.15 0.70 N 237 9 C4 A A 87 ? ? C5 A A 87 ? ? C6 A A 87 ? ? 113.87 117.00 -3.13 0.50 N 238 9 C5 A A 87 ? ? C6 A A 87 ? ? N1 A A 87 ? ? 121.28 117.70 3.58 0.50 N 239 9 N1 A A 87 ? ? C6 A A 87 ? ? N6 A A 87 ? ? 113.73 118.60 -4.87 0.60 N 240 9 "O4'" A U 88 ? ? "C1'" A U 88 ? ? N1 A U 88 ? ? 112.81 108.50 4.31 0.70 N 241 9 "O4'" A U 90 ? ? "C1'" A U 90 ? ? N1 A U 90 ? ? 112.89 108.50 4.39 0.70 N 242 10 N3 A C 64 ? ? C2 A C 64 ? ? O2 A C 64 ? ? 116.74 121.90 -5.16 0.70 N 243 10 "O4'" A C 65 ? ? "C1'" A C 65 ? ? N1 A C 65 ? ? 113.01 108.50 4.51 0.70 N 244 10 N3 A C 65 ? ? C2 A C 65 ? ? O2 A C 65 ? ? 116.66 121.90 -5.24 0.70 N 245 10 "O4'" A C 67 ? ? "C1'" A C 67 ? ? N1 A C 67 ? ? 112.90 108.50 4.40 0.70 N 246 10 N3 A C 67 ? ? C2 A C 67 ? ? O2 A C 67 ? ? 117.10 121.90 -4.80 0.70 N 247 10 "O4'" A U 69 ? ? "C1'" A U 69 ? ? N1 A U 69 ? ? 112.81 108.50 4.31 0.70 N 248 10 "O4'" A U 72 ? ? "C1'" A U 72 ? ? N1 A U 72 ? ? 112.75 108.50 4.25 0.70 N 249 10 "O4'" A U 76 ? ? "C1'" A U 76 ? ? N1 A U 76 ? ? 113.67 108.50 5.17 0.70 N 250 10 "O4'" A G 79 ? ? "C1'" A G 79 ? ? N9 A G 79 ? ? 114.71 108.50 6.21 0.70 N 251 10 "C1'" A A 80 ? ? "O4'" A A 80 ? ? "C4'" A A 80 ? ? 105.39 109.70 -4.31 0.70 N 252 10 "O4'" A A 80 ? ? "C1'" A A 80 ? ? N9 A A 80 ? ? 114.32 108.50 5.82 0.70 N 253 10 C5 A A 80 ? ? C6 A A 80 ? ? N1 A A 80 ? ? 121.52 117.70 3.82 0.50 N 254 10 N1 A A 80 ? ? C6 A A 80 ? ? N6 A A 80 ? ? 114.32 118.60 -4.28 0.60 N 255 10 C4 A A 81 ? ? C5 A A 81 ? ? C6 A A 81 ? ? 113.94 117.00 -3.06 0.50 N 256 10 C5 A A 81 ? ? C6 A A 81 ? ? N1 A A 81 ? ? 121.48 117.70 3.78 0.50 N 257 10 N1 A A 81 ? ? C6 A A 81 ? ? N6 A A 81 ? ? 114.04 118.60 -4.56 0.60 N 258 10 N3 A C 82 ? ? C2 A C 82 ? ? O2 A C 82 ? ? 116.96 121.90 -4.94 0.70 N 259 10 N3 A C 83 ? ? C2 A C 83 ? ? O2 A C 83 ? ? 116.86 121.90 -5.04 0.70 N 260 10 C4 A A 84 ? ? C5 A A 84 ? ? C6 A A 84 ? ? 113.82 117.00 -3.18 0.50 N 261 10 C5 A A 84 ? ? C6 A A 84 ? ? N1 A A 84 ? ? 121.26 117.70 3.56 0.50 N 262 10 N1 A A 84 ? ? C6 A A 84 ? ? N6 A A 84 ? ? 113.77 118.60 -4.83 0.60 N 263 10 N3 A C 85 ? ? C2 A C 85 ? ? O2 A C 85 ? ? 116.88 121.90 -5.02 0.70 N 264 10 N3 A C 86 ? ? C2 A C 86 ? ? O2 A C 86 ? ? 116.82 121.90 -5.08 0.70 N 265 10 C4 A A 87 ? ? C5 A A 87 ? ? C6 A A 87 ? ? 113.96 117.00 -3.04 0.50 N 266 10 C5 A A 87 ? ? C6 A A 87 ? ? N1 A A 87 ? ? 121.26 117.70 3.56 0.50 N 267 10 N1 A A 87 ? ? C6 A A 87 ? ? N6 A A 87 ? ? 113.77 118.60 -4.83 0.60 N 268 10 "O4'" A U 88 ? ? "C1'" A U 88 ? ? N1 A U 88 ? ? 112.95 108.50 4.45 0.70 N 269 10 "O4'" A U 90 ? ? "C1'" A U 90 ? ? N1 A U 90 ? ? 112.83 108.50 4.33 0.70 N # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 A A 80 ? ? 0.108 'SIDE CHAIN' 2 1 A A 81 ? ? 0.062 'SIDE CHAIN' 3 2 A A 80 ? ? 0.106 'SIDE CHAIN' 4 2 A A 81 ? ? 0.067 'SIDE CHAIN' 5 3 A A 80 ? ? 0.110 'SIDE CHAIN' 6 3 A A 81 ? ? 0.067 'SIDE CHAIN' 7 4 A A 80 ? ? 0.109 'SIDE CHAIN' 8 4 A A 81 ? ? 0.060 'SIDE CHAIN' 9 5 A A 81 ? ? 0.070 'SIDE CHAIN' 10 6 A A 81 ? ? 0.073 'SIDE CHAIN' 11 7 A A 80 ? ? 0.110 'SIDE CHAIN' 12 7 A A 81 ? ? 0.063 'SIDE CHAIN' 13 8 A A 80 ? ? 0.107 'SIDE CHAIN' 14 8 A A 81 ? ? 0.070 'SIDE CHAIN' 15 9 A A 80 ? ? 0.107 'SIDE CHAIN' 16 9 A A 81 ? ? 0.065 'SIDE CHAIN' 17 10 A A 81 ? ? 0.075 'SIDE CHAIN' # _pdbx_nmr_ensemble.entry_id 5LSN _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 10 _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the lowest energy' _pdbx_nmr_ensemble.representative_conformer ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 5LSN _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_sample_details.solution_id _pdbx_nmr_sample_details.contents _pdbx_nmr_sample_details.solvent_system _pdbx_nmr_sample_details.label _pdbx_nmr_sample_details.type _pdbx_nmr_sample_details.details 1 '0.5 mM RNA (29-MER), 90% H2O/10% D2O' '90% H2O/10% D2O' SB2_NA_H2O solution ? 2 '0.5 mM RNA (29-MER), 100% D2O' '100% D2O' SB2_NA_D2O solution ? 3 '0.5 mM [U-99% 13C; U-99% 15N] RNA (29-MER), 100% D2O' '100% D2O' SB2_CN_D2O solution ? # loop_ _pdbx_nmr_exptl_sample.solution_id _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_range _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling 1 'RNA (29-MER)' 0.5 ? mM 'natural abundance' 2 'RNA (29-MER)' 0.5 ? mM 'natural abundance' 3 'RNA (29-MER)' 0.5 ? mM '[U-99% 13C; U-99% 15N]' # loop_ _pdbx_nmr_exptl_sample_conditions.conditions_id _pdbx_nmr_exptl_sample_conditions.temperature _pdbx_nmr_exptl_sample_conditions.pressure_units _pdbx_nmr_exptl_sample_conditions.pressure _pdbx_nmr_exptl_sample_conditions.pH _pdbx_nmr_exptl_sample_conditions.ionic_strength _pdbx_nmr_exptl_sample_conditions.details _pdbx_nmr_exptl_sample_conditions.ionic_strength_err _pdbx_nmr_exptl_sample_conditions.ionic_strength_units _pdbx_nmr_exptl_sample_conditions.label _pdbx_nmr_exptl_sample_conditions.pH_err _pdbx_nmr_exptl_sample_conditions.pH_units _pdbx_nmr_exptl_sample_conditions.pressure_err _pdbx_nmr_exptl_sample_conditions.temperature_err _pdbx_nmr_exptl_sample_conditions.temperature_units 1 298 atm 1 7 0 ? ? 'Not defined' STD ? pH ? ? K 2 273 atm 1 7 0 ? ? 'Not defined' 0C ? pH ? ? K # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.spectrometer_id _pdbx_nmr_exptl.sample_state 1 1 1 '2D 1H-1H NOESY' 1 isotropic 4 1 2 '2D DQF-COSY' 1 isotropic 5 1 2 '2D 1H-1H TOCSY' 1 isotropic 2 2 3 '2D 1H-15N HSQC' 1 isotropic 3 1 3 '2D 1H-13C HSQC' 1 isotropic 6 1 3 '2D HCN' 1 isotropic # _pdbx_nmr_refine.entry_id 5LSN _pdbx_nmr_refine.method 'simulated annealing' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 4 # loop_ _pdbx_nmr_software.ordinal _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors 1 collection VNMR ? Varian 2 processing NMRPipe ? 'Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax' 3 'chemical shift assignment' Sparky ? Goddard 4 'structure calculation' Amber ? 'Case, Darden, Cheatham III, Simmerling, Wang, Duke, Luo, ... and Kollman' # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 C OP3 O N N 38 C P P N N 39 C OP1 O N N 40 C OP2 O N N 41 C "O5'" O N N 42 C "C5'" C N N 43 C "C4'" C N R 44 C "O4'" O N N 45 C "C3'" C N S 46 C "O3'" O N N 47 C "C2'" C N R 48 C "O2'" O N N 49 C "C1'" C N R 50 C N1 N N N 51 C C2 C N N 52 C O2 O N N 53 C N3 N N N 54 C C4 C N N 55 C N4 N N N 56 C C5 C N N 57 C C6 C N N 58 C HOP3 H N N 59 C HOP2 H N N 60 C "H5'" H N N 61 C "H5''" H N N 62 C "H4'" H N N 63 C "H3'" H N N 64 C "HO3'" H N N 65 C "H2'" H N N 66 C "HO2'" H N N 67 C "H1'" H N N 68 C H41 H N N 69 C H42 H N N 70 C H5 H N N 71 C H6 H N N 72 G OP3 O N N 73 G P P N N 74 G OP1 O N N 75 G OP2 O N N 76 G "O5'" O N N 77 G "C5'" C N N 78 G "C4'" C N R 79 G "O4'" O N N 80 G "C3'" C N S 81 G "O3'" O N N 82 G "C2'" C N R 83 G "O2'" O N N 84 G "C1'" C N R 85 G N9 N Y N 86 G C8 C Y N 87 G N7 N Y N 88 G C5 C Y N 89 G C6 C N N 90 G O6 O N N 91 G N1 N N N 92 G C2 C N N 93 G N2 N N N 94 G N3 N N N 95 G C4 C Y N 96 G HOP3 H N N 97 G HOP2 H N N 98 G "H5'" H N N 99 G "H5''" H N N 100 G "H4'" H N N 101 G "H3'" H N N 102 G "HO3'" H N N 103 G "H2'" H N N 104 G "HO2'" H N N 105 G "H1'" H N N 106 G H8 H N N 107 G H1 H N N 108 G H21 H N N 109 G H22 H N N 110 U OP3 O N N 111 U P P N N 112 U OP1 O N N 113 U OP2 O N N 114 U "O5'" O N N 115 U "C5'" C N N 116 U "C4'" C N R 117 U "O4'" O N N 118 U "C3'" C N S 119 U "O3'" O N N 120 U "C2'" C N R 121 U "O2'" O N N 122 U "C1'" C N R 123 U N1 N N N 124 U C2 C N N 125 U O2 O N N 126 U N3 N N N 127 U C4 C N N 128 U O4 O N N 129 U C5 C N N 130 U C6 C N N 131 U HOP3 H N N 132 U HOP2 H N N 133 U "H5'" H N N 134 U "H5''" H N N 135 U "H4'" H N N 136 U "H3'" H N N 137 U "HO3'" H N N 138 U "H2'" H N N 139 U "HO2'" H N N 140 U "H1'" H N N 141 U H3 H N N 142 U H5 H N N 143 U H6 H N N 144 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 C OP3 P sing N N 40 C OP3 HOP3 sing N N 41 C P OP1 doub N N 42 C P OP2 sing N N 43 C P "O5'" sing N N 44 C OP2 HOP2 sing N N 45 C "O5'" "C5'" sing N N 46 C "C5'" "C4'" sing N N 47 C "C5'" "H5'" sing N N 48 C "C5'" "H5''" sing N N 49 C "C4'" "O4'" sing N N 50 C "C4'" "C3'" sing N N 51 C "C4'" "H4'" sing N N 52 C "O4'" "C1'" sing N N 53 C "C3'" "O3'" sing N N 54 C "C3'" "C2'" sing N N 55 C "C3'" "H3'" sing N N 56 C "O3'" "HO3'" sing N N 57 C "C2'" "O2'" sing N N 58 C "C2'" "C1'" sing N N 59 C "C2'" "H2'" sing N N 60 C "O2'" "HO2'" sing N N 61 C "C1'" N1 sing N N 62 C "C1'" "H1'" sing N N 63 C N1 C2 sing N N 64 C N1 C6 sing N N 65 C C2 O2 doub N N 66 C C2 N3 sing N N 67 C N3 C4 doub N N 68 C C4 N4 sing N N 69 C C4 C5 sing N N 70 C N4 H41 sing N N 71 C N4 H42 sing N N 72 C C5 C6 doub N N 73 C C5 H5 sing N N 74 C C6 H6 sing N N 75 G OP3 P sing N N 76 G OP3 HOP3 sing N N 77 G P OP1 doub N N 78 G P OP2 sing N N 79 G P "O5'" sing N N 80 G OP2 HOP2 sing N N 81 G "O5'" "C5'" sing N N 82 G "C5'" "C4'" sing N N 83 G "C5'" "H5'" sing N N 84 G "C5'" "H5''" sing N N 85 G "C4'" "O4'" sing N N 86 G "C4'" "C3'" sing N N 87 G "C4'" "H4'" sing N N 88 G "O4'" "C1'" sing N N 89 G "C3'" "O3'" sing N N 90 G "C3'" "C2'" sing N N 91 G "C3'" "H3'" sing N N 92 G "O3'" "HO3'" sing N N 93 G "C2'" "O2'" sing N N 94 G "C2'" "C1'" sing N N 95 G "C2'" "H2'" sing N N 96 G "O2'" "HO2'" sing N N 97 G "C1'" N9 sing N N 98 G "C1'" "H1'" sing N N 99 G N9 C8 sing Y N 100 G N9 C4 sing Y N 101 G C8 N7 doub Y N 102 G C8 H8 sing N N 103 G N7 C5 sing Y N 104 G C5 C6 sing N N 105 G C5 C4 doub Y N 106 G C6 O6 doub N N 107 G C6 N1 sing N N 108 G N1 C2 sing N N 109 G N1 H1 sing N N 110 G C2 N2 sing N N 111 G C2 N3 doub N N 112 G N2 H21 sing N N 113 G N2 H22 sing N N 114 G N3 C4 sing N N 115 U OP3 P sing N N 116 U OP3 HOP3 sing N N 117 U P OP1 doub N N 118 U P OP2 sing N N 119 U P "O5'" sing N N 120 U OP2 HOP2 sing N N 121 U "O5'" "C5'" sing N N 122 U "C5'" "C4'" sing N N 123 U "C5'" "H5'" sing N N 124 U "C5'" "H5''" sing N N 125 U "C4'" "O4'" sing N N 126 U "C4'" "C3'" sing N N 127 U "C4'" "H4'" sing N N 128 U "O4'" "C1'" sing N N 129 U "C3'" "O3'" sing N N 130 U "C3'" "C2'" sing N N 131 U "C3'" "H3'" sing N N 132 U "O3'" "HO3'" sing N N 133 U "C2'" "O2'" sing N N 134 U "C2'" "C1'" sing N N 135 U "C2'" "H2'" sing N N 136 U "O2'" "HO2'" sing N N 137 U "C1'" N1 sing N N 138 U "C1'" "H1'" sing N N 139 U N1 C2 sing N N 140 U N1 C6 sing N N 141 U C2 O2 doub N N 142 U C2 N3 sing N N 143 U N3 C4 sing N N 144 U N3 H3 sing N N 145 U C4 O4 doub N N 146 U C4 C5 sing N N 147 U C5 C6 doub N N 148 U C5 H5 sing N N 149 U C6 H6 sing N N 150 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 5LSN 'double helix' 5LSN 'a-form double helix' 5LSN 'hairpin loop' 5LSN 'mismatched base pair' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A C 1 1_555 A G 29 1_555 0.316 -0.076 -0.096 7.495 -8.632 -0.545 1 A_C64:G92_A A 64 ? A 92 ? 19 1 1 A C 2 1_555 A G 28 1_555 0.666 -0.194 -0.082 2.507 -13.704 1.498 2 A_C65:G91_A A 65 ? A 91 ? 19 1 1 A U 3 1_555 A U 27 1_555 2.677 -1.731 0.228 1.330 -13.414 6.675 3 A_U66:U90_A A 66 ? A 90 ? 16 1 1 A C 4 1_555 A G 26 1_555 0.668 -0.188 -0.606 10.994 -12.674 4.074 4 A_C67:G89_A A 67 ? A 89 ? 19 1 1 A G 5 1_555 A U 25 1_555 -2.439 -0.452 -0.031 -0.586 -4.700 -1.215 5 A_G68:U88_A A 68 ? A 88 ? 28 1 1 A U 6 1_555 A A 24 1_555 -0.236 0.041 -0.156 3.824 -6.109 -2.428 6 A_U69:A87_A A 69 ? A 87 ? 20 1 1 A G 7 1_555 A C 23 1_555 -0.470 -0.128 -0.119 -1.025 -2.018 0.030 7 A_G70:C86_A A 70 ? A 86 ? 19 1 1 A G 8 1_555 A C 22 1_555 -0.442 -0.123 -0.093 -0.379 -3.777 -0.139 8 A_G71:C85_A A 71 ? A 85 ? 19 1 1 A U 9 1_555 A A 21 1_555 -0.156 0.018 -0.114 -0.248 -3.127 0.005 9 A_U72:A84_A A 72 ? A 84 ? 20 1 1 A G 10 1_555 A C 20 1_555 -0.467 -0.133 -0.076 -3.877 -6.475 -0.110 10 A_G73:C83_A A 73 ? A 83 ? 19 1 1 A G 11 1_555 A C 19 1_555 -0.452 -0.133 0.002 -4.329 -10.437 -0.050 11 A_G74:C82_A A 74 ? A 82 ? 19 1 1 A U 12 1_555 A A 18 1_555 -0.298 0.083 0.074 -5.819 -6.913 -4.846 12 A_U75:A81_A A 75 ? A 81 ? 20 1 1 A U 13 1_555 A A 17 1_555 -0.108 -0.059 -0.723 9.681 3.015 -2.619 13 A_U76:A80_A A 76 ? A 80 ? 20 1 1 A G 14 1_555 A G 16 1_555 7.778 4.489 -0.478 -4.977 4.783 34.112 14 A_G77:G79_A A 77 ? A 79 ? ? ? # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A C 1 1_555 A G 29 1_555 A C 2 1_555 A G 28 1_555 0.192 -1.921 3.374 0.638 7.850 32.644 -4.572 -0.232 2.852 13.719 -1.115 33.555 1 AA_C64C65:G91G92_AA A 64 ? A 92 ? A 65 ? A 91 ? 1 A C 2 1_555 A G 28 1_555 A U 3 1_555 A U 27 1_555 0.630 -1.403 3.311 0.763 5.309 41.574 -2.508 -0.802 3.127 7.442 -1.069 41.903 2 AA_C65U66:U90G91_AA A 65 ? A 91 ? A 66 ? A 90 ? 1 A U 3 1_555 A U 27 1_555 A C 4 1_555 A G 26 1_555 -0.328 -2.589 2.962 7.603 7.950 19.415 -8.903 2.959 1.559 21.485 -20.549 22.289 3 AA_U66C67:G89U90_AA A 66 ? A 90 ? A 67 ? A 89 ? 1 A C 4 1_555 A G 26 1_555 A G 5 1_555 A U 25 1_555 -0.523 -2.397 3.797 -4.922 6.503 17.887 -10.348 -0.983 2.803 19.643 14.867 19.645 4 AA_C67G68:U88G89_AA A 67 ? A 89 ? A 68 ? A 88 ? 1 A G 5 1_555 A U 25 1_555 A U 6 1_555 A A 24 1_555 -0.002 -2.158 3.315 0.235 0.029 35.772 -3.518 0.038 3.313 0.047 -0.383 35.773 5 AA_G68U69:A87U88_AA A 68 ? A 88 ? A 69 ? A 87 ? 1 A U 6 1_555 A A 24 1_555 A G 7 1_555 A C 23 1_555 0.263 -2.103 3.595 -0.854 2.399 29.752 -4.616 -0.700 3.410 4.661 1.659 29.858 6 AA_U69G70:C86A87_AA A 69 ? A 87 ? A 70 ? A 86 ? 1 A G 7 1_555 A C 23 1_555 A G 8 1_555 A C 22 1_555 -0.043 -2.287 3.372 -0.646 1.421 29.883 -4.727 -0.053 3.262 2.753 1.251 29.923 7 AA_G70G71:C85C86_AA A 70 ? A 86 ? A 71 ? A 85 ? 1 A G 8 1_555 A C 22 1_555 A U 9 1_555 A A 21 1_555 0.140 -2.568 3.398 -0.125 -0.333 28.554 -5.128 -0.314 3.426 -0.676 0.254 28.556 8 AA_G71U72:A84C85_AA A 71 ? A 85 ? A 72 ? A 84 ? 1 A U 9 1_555 A A 21 1_555 A G 10 1_555 A C 20 1_555 -0.123 -2.132 3.554 -0.222 1.287 28.917 -4.571 0.193 3.458 2.575 0.444 28.946 9 AA_U72G73:C83A84_AA A 72 ? A 84 ? A 73 ? A 83 ? 1 A G 10 1_555 A C 20 1_555 A G 11 1_555 A C 19 1_555 -0.272 -2.144 3.330 -0.924 3.931 30.794 -4.743 0.334 3.046 7.363 1.731 31.051 10 AA_G73G74:C82C83_AA A 73 ? A 83 ? A 74 ? A 82 ? 1 A G 11 1_555 A C 19 1_555 A U 12 1_555 A A 18 1_555 -0.244 -2.002 3.379 -0.064 2.825 31.683 -4.173 0.434 3.193 5.161 0.116 31.806 11 AA_G74U75:A81C82_AA A 74 ? A 82 ? A 75 ? A 81 ? 1 A U 12 1_555 A A 18 1_555 A U 13 1_555 A A 17 1_555 0.286 -1.120 3.078 5.314 -7.151 27.623 -0.671 0.592 3.258 -14.506 -10.779 28.997 12 AA_U75U76:A80A81_AA A 75 ? A 81 ? A 76 ? A 80 ? 1 A U 13 1_555 A A 17 1_555 A G 14 1_555 A G 16 1_555 2.492 -4.392 3.495 3.432 8.631 44.862 -6.380 -2.913 2.821 11.168 -4.440 45.765 13 AA_U76G77:G79A80_AA A 76 ? A 80 ? A 77 ? A 79 ? # _pdbx_audit_support.funding_organization S.H.A.R.M. _pdbx_audit_support.country Italy _pdbx_audit_support.grant_number FP1123744003 _pdbx_audit_support.ordinal 1 # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.model VNMRS _pdbx_nmr_spectrometer.type ? _pdbx_nmr_spectrometer.manufacturer Agilent _pdbx_nmr_spectrometer.field_strength 600 _pdbx_nmr_spectrometer.details ? # _atom_sites.entry_id 5LSN _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O P # loop_