HEADER TRANSFERASE 05-SEP-16 5LSU TITLE STRUCTURE OF THE EPIGENETIC ONCOGENE MMSET AND INHIBITION BY N-ALKYL TITLE 2 SINEFUNGIN DERIVATIVES COMPND MOL_ID: 1; COMPND 2 MOLECULE: HISTONE-LYSINE N-METHYLTRANSFERASE NSD2; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: MULTIPLE MYELOMA SET DOMAIN-CONTAINING PROTEIN,MMSET,NUCLEAR COMPND 5 SET DOMAIN-CONTAINING PROTEIN 2,NSD2,PROTEIN TRITHORAX-5,WOLF- COMPND 6 HIRSCHHORN SYNDROME CANDIDATE 1 PROTEIN,WHSC1; COMPND 7 EC: 2.1.1.43; COMPND 8 ENGINEERED: YES; COMPND 9 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: WHSC1, KIAA1090, MMSET, NSD2, TRX5; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) KEYWDS LYSINE METHYLTRANSFERASE MMSET SET DOMAIN, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR D.TISI,P.PATHURI,T.HEIGHTMAN REVDAT 3 17-JAN-24 5LSU 1 REMARK REVDAT 2 21-DEC-16 5LSU 1 JRNL REVDAT 1 05-OCT-16 5LSU 0 JRNL AUTH D.TISI,E.CHIARPARIN,E.TAMANINI,P.PATHURI,J.E.COYLE,A.HOLD, JRNL AUTH 2 F.P.HOLDING,N.AMIN,A.C.MARTIN,S.J.RICH,V.BERDINI,J.YON, JRNL AUTH 3 P.ACKLAM,R.BURKE,L.DROUIN,J.E.HARMER,F.JEGANATHAN, JRNL AUTH 4 R.L.VAN MONTFORT,Y.NEWBATT,M.TORTORICI,M.WESTLAKE,A.WOOD, JRNL AUTH 5 S.HOELDER,T.D.HEIGHTMAN JRNL TITL STRUCTURE OF THE EPIGENETIC ONCOGENE MMSET AND INHIBITION BY JRNL TITL 2 N-ALKYL SINEFUNGIN DERIVATIVES. JRNL REF ACS CHEM. BIOL. V. 11 3093 2016 JRNL REFN ESSN 1554-8937 JRNL PMID 27571355 JRNL DOI 10.1021/ACSCHEMBIO.6B00308 REMARK 2 REMARK 2 RESOLUTION. 2.14 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.11.7 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.14 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.81 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 27404 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.175 REMARK 3 R VALUE (WORKING SET) : 0.171 REMARK 3 FREE R VALUE : 0.238 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.050 REMARK 3 FREE R VALUE TEST SET COUNT : 1384 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 14 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.14 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.22 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.93 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2813 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2450 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2664 REMARK 3 BIN R VALUE (WORKING SET) : 0.2430 REMARK 3 BIN FREE R VALUE : 0.2800 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.30 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 149 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.000 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3562 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 60 REMARK 3 SOLVENT ATOMS : 528 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 41.03 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 53.71 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -18.83030 REMARK 3 B22 (A**2) : 6.58740 REMARK 3 B33 (A**2) : 12.24290 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.270 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.283 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.211 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.229 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.197 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.934 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.901 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 3763 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 5127 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1323 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 100 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 559 ; 16.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 3763 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : 2 ; 5.000 ; SEMIHARMONIC REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 489 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 4527 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.012 REMARK 3 BOND ANGLES (DEGREES) : 1.16 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 6.47 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 20.21 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|973 - A|1206 } REMARK 3 ORIGIN FOR THE GROUP (A): 7.2855 58.4780 12.3833 REMARK 3 T TENSOR REMARK 3 T11: -0.0521 T22: -0.1407 REMARK 3 T33: -0.1646 T12: 0.0376 REMARK 3 T13: -0.0273 T23: 0.0057 REMARK 3 L TENSOR REMARK 3 L11: 0.9573 L22: 2.2280 REMARK 3 L33: 3.6371 L12: 0.0006 REMARK 3 L13: -0.4705 L23: 0.0232 REMARK 3 S TENSOR REMARK 3 S11: 0.0125 S12: 0.0718 S13: 0.0320 REMARK 3 S21: 0.3654 S22: -0.0857 S23: -0.1123 REMARK 3 S31: 0.1812 S32: 0.3013 S33: 0.0732 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { B|976 - B|1206 } REMARK 3 ORIGIN FOR THE GROUP (A): -8.4414 62.9493 54.2972 REMARK 3 T TENSOR REMARK 3 T11: -0.1881 T22: -0.1348 REMARK 3 T33: -0.0620 T12: -0.0046 REMARK 3 T13: -0.0068 T23: -0.0216 REMARK 3 L TENSOR REMARK 3 L11: 0.8748 L22: 4.3172 REMARK 3 L33: 2.4844 L12: -0.5887 REMARK 3 L13: 0.3958 L23: 0.4637 REMARK 3 S TENSOR REMARK 3 S11: 0.0450 S12: 0.0062 S13: -0.1076 REMARK 3 S21: -0.1196 S22: -0.2003 S23: 0.5442 REMARK 3 S31: 0.0555 S32: -0.1665 S33: 0.1553 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5LSU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 05-SEP-16. REMARK 100 THE DEPOSITION ID IS D_1200001301. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-JUL-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 300K REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27812 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.140 REMARK 200 RESOLUTION RANGE LOW (A) : 61.560 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.500 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.14 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.16 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: REFMAC REMARK 200 STARTING MODEL: 3OOI REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.49 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.10 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 16.0%W/V PEG 3350, 0.1M NH4CL, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 47.29150 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 40.54700 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 31.55700 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 40.54700 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 47.29150 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 31.55700 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 952 REMARK 465 GLY A 953 REMARK 465 SER A 954 REMARK 465 SER A 955 REMARK 465 HIS A 956 REMARK 465 HIS A 957 REMARK 465 HIS A 958 REMARK 465 HIS A 959 REMARK 465 HIS A 960 REMARK 465 HIS A 961 REMARK 465 SER A 962 REMARK 465 SER A 963 REMARK 465 GLY A 964 REMARK 465 LEU A 965 REMARK 465 VAL A 966 REMARK 465 PRO A 967 REMARK 465 ARG A 968 REMARK 465 GLY A 969 REMARK 465 SER A 970 REMARK 465 HIS A 971 REMARK 465 MET A 972 REMARK 465 MET B 952 REMARK 465 GLY B 953 REMARK 465 SER B 954 REMARK 465 SER B 955 REMARK 465 HIS B 956 REMARK 465 HIS B 957 REMARK 465 HIS B 958 REMARK 465 HIS B 959 REMARK 465 HIS B 960 REMARK 465 HIS B 961 REMARK 465 SER B 962 REMARK 465 SER B 963 REMARK 465 GLY B 964 REMARK 465 LEU B 965 REMARK 465 VAL B 966 REMARK 465 PRO B 967 REMARK 465 ARG B 968 REMARK 465 GLY B 969 REMARK 465 SER B 970 REMARK 465 HIS B 971 REMARK 465 MET B 972 REMARK 465 LYS B 973 REMARK 465 LEU B 974 REMARK 465 LEU B 975 REMARK 465 LYS B 1019 REMARK 465 PRO B 1020 REMARK 465 THR B 1021 REMARK 465 ASP B 1022 REMARK 465 GLU B 1023 REMARK 465 ASN B 1024 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU A 974 CG CD1 CD2 REMARK 470 LEU A 975 CG CD1 CD2 REMARK 470 LEU A 978 CG CD1 CD2 REMARK 470 THR A 981 OG1 CG2 REMARK 470 GLN A 982 CG CD OE1 NE2 REMARK 470 GLU A 983 CG CD OE1 OE2 REMARK 470 ARG A 986 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 977 CG CD OE1 OE2 REMARK 470 ARG B 979 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 980 CG CD OE1 OE2 REMARK 470 GLN B 982 CG CD OE1 NE2 REMARK 470 GLU B 983 CG CD OE1 OE2 REMARK 470 SER B 984 OG REMARK 470 GLU B 985 CG CD OE1 OE2 REMARK 470 GLU B1031 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 982 56.76 20.04 REMARK 500 GLU A 983 -160.26 -75.40 REMARK 500 GLU A1031 31.47 -91.73 REMARK 500 GLN A1055 28.48 -141.42 REMARK 500 ASN A1135 -155.47 -120.05 REMARK 500 ASP A1182 -8.26 -149.78 REMARK 500 GLN B 982 60.83 29.95 REMARK 500 CYS B1026 -2.47 60.41 REMARK 500 ASP B1125 3.58 58.80 REMARK 500 ASN B1135 -157.70 -110.97 REMARK 500 ASP B1182 -7.99 -149.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B1648 DISTANCE = 5.95 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1302 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A1016 SG REMARK 620 2 CYS A1018 SG 110.3 REMARK 620 3 CYS A1026 SG 95.7 100.5 REMARK 620 4 CYS A1032 SG 117.0 118.5 111.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1303 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A1026 SG REMARK 620 2 CYS A1041 SG 120.3 REMARK 620 3 CYS A1046 SG 100.3 119.9 REMARK 620 4 CYS A1052 SG 108.0 101.5 105.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A1144 SG REMARK 620 2 CYS A1191 SG 115.0 REMARK 620 3 CYS A1193 SG 103.9 110.2 REMARK 620 4 CYS A1198 SG 105.8 106.9 115.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B1302 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B1016 SG REMARK 620 2 CYS B1018 SG 115.6 REMARK 620 3 CYS B1026 SG 107.4 98.9 REMARK 620 4 CYS B1032 SG 119.7 106.6 106.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B1303 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B1026 SG REMARK 620 2 CYS B1041 SG 122.4 REMARK 620 3 CYS B1046 SG 96.9 117.6 REMARK 620 4 CYS B1052 SG 105.3 105.7 107.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B1301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B1144 SG REMARK 620 2 CYS B1191 SG 117.7 REMARK 620 3 CYS B1193 SG 105.1 107.7 REMARK 620 4 CYS B1198 SG 109.7 107.0 109.5 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 1301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 1302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 1303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SAM A 1304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 1301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 1302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 1303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SAM B 1304 DBREF 5LSU A 973 1203 UNP O96028 NSD2_HUMAN 973 1203 DBREF 5LSU B 973 1203 UNP O96028 NSD2_HUMAN 973 1203 SEQADV 5LSU MET A 952 UNP O96028 INITIATING METHIONINE SEQADV 5LSU GLY A 953 UNP O96028 EXPRESSION TAG SEQADV 5LSU SER A 954 UNP O96028 EXPRESSION TAG SEQADV 5LSU SER A 955 UNP O96028 EXPRESSION TAG SEQADV 5LSU HIS A 956 UNP O96028 EXPRESSION TAG SEQADV 5LSU HIS A 957 UNP O96028 EXPRESSION TAG SEQADV 5LSU HIS A 958 UNP O96028 EXPRESSION TAG SEQADV 5LSU HIS A 959 UNP O96028 EXPRESSION TAG SEQADV 5LSU HIS A 960 UNP O96028 EXPRESSION TAG SEQADV 5LSU HIS A 961 UNP O96028 EXPRESSION TAG SEQADV 5LSU SER A 962 UNP O96028 EXPRESSION TAG SEQADV 5LSU SER A 963 UNP O96028 EXPRESSION TAG SEQADV 5LSU GLY A 964 UNP O96028 EXPRESSION TAG SEQADV 5LSU LEU A 965 UNP O96028 EXPRESSION TAG SEQADV 5LSU VAL A 966 UNP O96028 EXPRESSION TAG SEQADV 5LSU PRO A 967 UNP O96028 EXPRESSION TAG SEQADV 5LSU ARG A 968 UNP O96028 EXPRESSION TAG SEQADV 5LSU GLY A 969 UNP O96028 EXPRESSION TAG SEQADV 5LSU SER A 970 UNP O96028 EXPRESSION TAG SEQADV 5LSU HIS A 971 UNP O96028 EXPRESSION TAG SEQADV 5LSU MET A 972 UNP O96028 EXPRESSION TAG SEQADV 5LSU LEU A 975 UNP O96028 GLN 975 ENGINEERED MUTATION SEQADV 5LSU LEU A 978 UNP O96028 ALA 978 ENGINEERED MUTATION SEQADV 5LSU LEU A 1071 UNP O96028 ASP 1071 ENGINEERED MUTATION SEQADV 5LSU GLN A 1072 UNP O96028 GLY 1072 ENGINEERED MUTATION SEQADV 5LSU ARG A 1073 UNP O96028 LYS 1073 ENGINEERED MUTATION SEQADV 5LSU MET B 952 UNP O96028 INITIATING METHIONINE SEQADV 5LSU GLY B 953 UNP O96028 EXPRESSION TAG SEQADV 5LSU SER B 954 UNP O96028 EXPRESSION TAG SEQADV 5LSU SER B 955 UNP O96028 EXPRESSION TAG SEQADV 5LSU HIS B 956 UNP O96028 EXPRESSION TAG SEQADV 5LSU HIS B 957 UNP O96028 EXPRESSION TAG SEQADV 5LSU HIS B 958 UNP O96028 EXPRESSION TAG SEQADV 5LSU HIS B 959 UNP O96028 EXPRESSION TAG SEQADV 5LSU HIS B 960 UNP O96028 EXPRESSION TAG SEQADV 5LSU HIS B 961 UNP O96028 EXPRESSION TAG SEQADV 5LSU SER B 962 UNP O96028 EXPRESSION TAG SEQADV 5LSU SER B 963 UNP O96028 EXPRESSION TAG SEQADV 5LSU GLY B 964 UNP O96028 EXPRESSION TAG SEQADV 5LSU LEU B 965 UNP O96028 EXPRESSION TAG SEQADV 5LSU VAL B 966 UNP O96028 EXPRESSION TAG SEQADV 5LSU PRO B 967 UNP O96028 EXPRESSION TAG SEQADV 5LSU ARG B 968 UNP O96028 EXPRESSION TAG SEQADV 5LSU GLY B 969 UNP O96028 EXPRESSION TAG SEQADV 5LSU SER B 970 UNP O96028 EXPRESSION TAG SEQADV 5LSU HIS B 971 UNP O96028 EXPRESSION TAG SEQADV 5LSU MET B 972 UNP O96028 EXPRESSION TAG SEQADV 5LSU LEU B 975 UNP O96028 GLN 975 ENGINEERED MUTATION SEQADV 5LSU LEU B 978 UNP O96028 ALA 978 ENGINEERED MUTATION SEQADV 5LSU LEU B 1071 UNP O96028 ASP 1071 ENGINEERED MUTATION SEQADV 5LSU GLN B 1072 UNP O96028 GLY 1072 ENGINEERED MUTATION SEQADV 5LSU ARG B 1073 UNP O96028 LYS 1073 ENGINEERED MUTATION SEQRES 1 A 252 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 252 LEU VAL PRO ARG GLY SER HIS MET LYS LEU LEU ARG GLU SEQRES 3 A 252 LEU ARG GLU THR GLN GLU SER GLU ARG LYS PRO PRO PRO SEQRES 4 A 252 TYR LYS HIS ILE LYS VAL ASN LYS PRO TYR GLY LYS VAL SEQRES 5 A 252 GLN ILE TYR THR ALA ASP ILE SER GLU ILE PRO LYS CYS SEQRES 6 A 252 ASN CYS LYS PRO THR ASP GLU ASN PRO CYS GLY PHE ASP SEQRES 7 A 252 SER GLU CYS LEU ASN ARG MET LEU MET PHE GLU CYS HIS SEQRES 8 A 252 PRO GLN VAL CYS PRO ALA GLY GLU PHE CYS GLN ASN GLN SEQRES 9 A 252 CYS PHE THR LYS ARG GLN TYR PRO GLU THR LYS ILE ILE SEQRES 10 A 252 LYS THR LEU GLN ARG GLY TRP GLY LEU VAL ALA LYS ARG SEQRES 11 A 252 ASP ILE ARG LYS GLY GLU PHE VAL ASN GLU TYR VAL GLY SEQRES 12 A 252 GLU LEU ILE ASP GLU GLU GLU CYS MET ALA ARG ILE LYS SEQRES 13 A 252 HIS ALA HIS GLU ASN ASP ILE THR HIS PHE TYR MET LEU SEQRES 14 A 252 THR ILE ASP LYS ASP ARG ILE ILE ASP ALA GLY PRO LYS SEQRES 15 A 252 GLY ASN TYR SER ARG PHE MET ASN HIS SER CYS GLN PRO SEQRES 16 A 252 ASN CYS GLU THR LEU LYS TRP THR VAL ASN GLY ASP THR SEQRES 17 A 252 ARG VAL GLY LEU PHE ALA VAL CYS ASP ILE PRO ALA GLY SEQRES 18 A 252 THR GLU LEU THR PHE ASN TYR ASN LEU ASP CYS LEU GLY SEQRES 19 A 252 ASN GLU LYS THR VAL CYS ARG CYS GLY ALA SER ASN CYS SEQRES 20 A 252 SER GLY PHE LEU GLY SEQRES 1 B 252 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 252 LEU VAL PRO ARG GLY SER HIS MET LYS LEU LEU ARG GLU SEQRES 3 B 252 LEU ARG GLU THR GLN GLU SER GLU ARG LYS PRO PRO PRO SEQRES 4 B 252 TYR LYS HIS ILE LYS VAL ASN LYS PRO TYR GLY LYS VAL SEQRES 5 B 252 GLN ILE TYR THR ALA ASP ILE SER GLU ILE PRO LYS CYS SEQRES 6 B 252 ASN CYS LYS PRO THR ASP GLU ASN PRO CYS GLY PHE ASP SEQRES 7 B 252 SER GLU CYS LEU ASN ARG MET LEU MET PHE GLU CYS HIS SEQRES 8 B 252 PRO GLN VAL CYS PRO ALA GLY GLU PHE CYS GLN ASN GLN SEQRES 9 B 252 CYS PHE THR LYS ARG GLN TYR PRO GLU THR LYS ILE ILE SEQRES 10 B 252 LYS THR LEU GLN ARG GLY TRP GLY LEU VAL ALA LYS ARG SEQRES 11 B 252 ASP ILE ARG LYS GLY GLU PHE VAL ASN GLU TYR VAL GLY SEQRES 12 B 252 GLU LEU ILE ASP GLU GLU GLU CYS MET ALA ARG ILE LYS SEQRES 13 B 252 HIS ALA HIS GLU ASN ASP ILE THR HIS PHE TYR MET LEU SEQRES 14 B 252 THR ILE ASP LYS ASP ARG ILE ILE ASP ALA GLY PRO LYS SEQRES 15 B 252 GLY ASN TYR SER ARG PHE MET ASN HIS SER CYS GLN PRO SEQRES 16 B 252 ASN CYS GLU THR LEU LYS TRP THR VAL ASN GLY ASP THR SEQRES 17 B 252 ARG VAL GLY LEU PHE ALA VAL CYS ASP ILE PRO ALA GLY SEQRES 18 B 252 THR GLU LEU THR PHE ASN TYR ASN LEU ASP CYS LEU GLY SEQRES 19 B 252 ASN GLU LYS THR VAL CYS ARG CYS GLY ALA SER ASN CYS SEQRES 20 B 252 SER GLY PHE LEU GLY HET ZN A1301 1 HET ZN A1302 1 HET ZN A1303 1 HET SAM A1304 50 HET ZN B1301 1 HET ZN B1302 1 HET ZN B1303 1 HET SAM B1304 50 HETNAM ZN ZINC ION HETNAM SAM S-ADENOSYLMETHIONINE FORMUL 3 ZN 6(ZN 2+) FORMUL 6 SAM 2(C15 H22 N6 O5 S) FORMUL 11 HOH *528(H2 O) HELIX 1 AA1 LYS A 973 GLN A 982 1 10 HELIX 2 AA2 ASP A 1009 ILE A 1013 5 5 HELIX 3 AA3 CYS A 1032 LEU A 1037 1 6 HELIX 4 AA4 GLN A 1055 ARG A 1060 1 6 HELIX 5 AA5 ASP A 1098 ASN A 1112 1 15 HELIX 6 AA6 ASN A 1135 MET A 1140 5 6 HELIX 7 AA7 ASN A 1178 LEU A 1181 5 4 HELIX 8 AA8 GLU B 977 GLN B 982 1 6 HELIX 9 AA9 ASP B 1009 ILE B 1013 5 5 HELIX 10 AB1 CYS B 1032 LEU B 1037 1 6 HELIX 11 AB2 GLN B 1055 ARG B 1060 1 6 HELIX 12 AB3 ASP B 1098 ASN B 1112 1 15 HELIX 13 AB4 TYR B 1136 MET B 1140 5 5 HELIX 14 AB5 ASN B 1178 ASP B 1182 5 5 SHEET 1 AA1 2 LYS A 992 HIS A 993 0 SHEET 2 AA1 2 LYS A1133 GLY A1134 1 O GLY A1134 N LYS A 992 SHEET 1 AA2 5 LYS A 998 PRO A 999 0 SHEET 2 AA2 5 GLU A1095 ILE A1097 1 O LEU A1096 N LYS A 998 SHEET 3 AA2 5 ARG A1126 ASP A1129 -1 O ASP A1129 N GLU A1095 SHEET 4 AA2 5 MET A1119 ASP A1123 -1 N LEU A1120 O ILE A1128 SHEET 5 AA2 5 CYS A1183 LEU A1184 -1 O LEU A1184 N MET A1119 SHEET 1 AA3 2 THR A1065 LYS A1069 0 SHEET 2 AA3 2 TRP A1075 ALA A1079 -1 O GLY A1076 N ILE A1068 SHEET 1 AA4 3 PHE A1088 TYR A1092 0 SHEET 2 AA4 3 ASP A1158 ALA A1165 -1 O LEU A1163 N VAL A1089 SHEET 3 AA4 3 CYS A1148 VAL A1155 -1 N VAL A1155 O ASP A1158 SHEET 1 AA5 2 ASN A1141 HIS A1142 0 SHEET 2 AA5 2 THR A1176 PHE A1177 1 O PHE A1177 N ASN A1141 SHEET 1 AA6 4 LYS B 992 HIS B 993 0 SHEET 2 AA6 4 ARG B1126 GLY B1134 1 O PRO B1132 N LYS B 992 SHEET 3 AA6 4 GLY B1094 ILE B1097 -1 N GLU B1095 O ASP B1129 SHEET 4 AA6 4 LYS B 998 PRO B 999 1 N LYS B 998 O LEU B1096 SHEET 1 AA7 3 LYS B 992 HIS B 993 0 SHEET 2 AA7 3 ARG B1126 GLY B1134 1 O PRO B1132 N LYS B 992 SHEET 3 AA7 3 MET B1119 ASP B1123 -1 N LEU B1120 O ILE B1128 SHEET 1 AA8 2 THR B1065 LYS B1069 0 SHEET 2 AA8 2 TRP B1075 ALA B1079 -1 O GLY B1076 N ILE B1068 SHEET 1 AA9 3 PHE B1088 TYR B1092 0 SHEET 2 AA9 3 ASP B1158 ALA B1165 -1 O LEU B1163 N VAL B1089 SHEET 3 AA9 3 CYS B1148 VAL B1155 -1 N TRP B1153 O ARG B1160 SHEET 1 AB1 2 ASN B1141 HIS B1142 0 SHEET 2 AB1 2 THR B1176 PHE B1177 1 O PHE B1177 N ASN B1141 LINK SG CYS A1016 ZN ZN A1302 1555 1555 2.47 LINK SG CYS A1018 ZN ZN A1302 1555 1555 2.31 LINK SG CYS A1026 ZN ZN A1302 1555 1555 2.58 LINK SG CYS A1026 ZN ZN A1303 1555 1555 2.18 LINK SG CYS A1032 ZN ZN A1302 1555 1555 2.15 LINK SG CYS A1041 ZN ZN A1303 1555 1555 2.27 LINK SG CYS A1046 ZN ZN A1303 1555 1555 2.36 LINK SG CYS A1052 ZN ZN A1303 1555 1555 2.42 LINK SG CYS A1144 ZN ZN A1301 1555 1555 2.51 LINK SG CYS A1191 ZN ZN A1301 1555 1555 2.32 LINK SG CYS A1193 ZN ZN A1301 1555 1555 2.39 LINK SG CYS A1198 ZN ZN A1301 1555 1555 2.37 LINK SG CYS B1016 ZN ZN B1302 1555 1555 2.18 LINK SG CYS B1018 ZN ZN B1302 1555 1555 2.50 LINK SG CYS B1026 ZN ZN B1302 1555 1555 2.66 LINK SG CYS B1026 ZN ZN B1303 1555 1555 2.27 LINK SG CYS B1032 ZN ZN B1302 1555 1555 2.28 LINK SG CYS B1041 ZN ZN B1303 1555 1555 2.59 LINK SG CYS B1046 ZN ZN B1303 1555 1555 2.42 LINK SG CYS B1052 ZN ZN B1303 1555 1555 2.37 LINK SG CYS B1144 ZN ZN B1301 1555 1555 2.43 LINK SG CYS B1191 ZN ZN B1301 1555 1555 2.23 LINK SG CYS B1193 ZN ZN B1301 1555 1555 2.47 LINK SG CYS B1198 ZN ZN B1301 1555 1555 2.35 SITE 1 AC1 4 CYS A1144 CYS A1191 CYS A1193 CYS A1198 SITE 1 AC2 4 CYS A1016 CYS A1018 CYS A1026 CYS A1032 SITE 1 AC3 4 CYS A1026 CYS A1041 CYS A1046 CYS A1052 SITE 1 AC4 18 ARG A1073 TRP A1075 THR A1115 HIS A1116 SITE 2 AC4 18 PHE A1117 TYR A1118 ARG A1138 PHE A1139 SITE 3 AC4 18 ASN A1141 HIS A1142 TYR A1179 ASN A1186 SITE 4 AC4 18 VAL A1190 CYS A1191 ARG A1192 HOH A1447 SITE 5 AC4 18 HOH A1471 HOH A1579 SITE 1 AC5 4 CYS B1144 CYS B1191 CYS B1193 CYS B1198 SITE 1 AC6 4 CYS B1016 CYS B1018 CYS B1026 CYS B1032 SITE 1 AC7 4 CYS B1026 CYS B1041 CYS B1046 CYS B1052 SITE 1 AC8 20 ARG B1073 TRP B1075 THR B1115 HIS B1116 SITE 2 AC8 20 PHE B1117 TYR B1118 ARG B1138 PHE B1139 SITE 3 AC8 20 ASN B1141 HIS B1142 TYR B1179 ASN B1186 SITE 4 AC8 20 VAL B1190 CYS B1191 ARG B1192 CYS B1193 SITE 5 AC8 20 HOH B1407 HOH B1479 HOH B1492 HOH B1503 CRYST1 94.583 63.114 81.094 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010573 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015844 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012331 0.00000