HEADER TRANSFERASE 05-SEP-16 5LSX TITLE STRUCTURE OF THE EPIGENETIC ONCOGENE MMSET AND INHIBITION BY N-ALKYL TITLE 2 SINEFUNGIN DERIVATIVES COMPND MOL_ID: 1; COMPND 2 MOLECULE: HISTONE-LYSINE N-METHYLTRANSFERASE SETD2; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 1433-1711; COMPND 5 SYNONYM: HIF-1,HUNTINGTIN YEAST PARTNER B,HUNTINGTIN-INTERACTING COMPND 6 PROTEIN 1,HIP-1,HUNTINGTIN-INTERACTING PROTEIN B,LYSINE N- COMPND 7 METHYLTRANSFERASE 3A,SET DOMAIN-CONTAINING PROTEIN 2,HSET2,P231HBP; COMPND 8 EC: 2.1.1.43; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SETD2, HIF1, HYPB, KIAA1732, KMT3A, SET2, HSPC069; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: CODON PLUS RIL KEYWDS LYSINE METHYLTRANSFERASE SETD2 SET DOMAIN, SETD2#1, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR D.TISI,P.PATHURI,T.HEIGHTMAN REVDAT 5 08-MAY-24 5LSX 1 REMARK REVDAT 4 16-OCT-19 5LSX 1 REMARK REVDAT 3 21-DEC-16 5LSX 1 JRNL REVDAT 2 12-OCT-16 5LSX 1 JRNL REVDAT 1 05-OCT-16 5LSX 0 JRNL AUTH D.TISI,E.CHIARPARIN,E.TAMANINI,P.PATHURI,J.E.COYLE,A.HOLD, JRNL AUTH 2 F.P.HOLDING,N.AMIN,A.C.MARTIN,S.J.RICH,V.BERDINI,J.YON, JRNL AUTH 3 P.ACKLAM,R.BURKE,L.DROUIN,J.E.HARMER,F.JEGANATHAN, JRNL AUTH 4 R.L.VAN MONTFORT,Y.NEWBATT,M.TORTORICI,M.WESTLAKE,A.WOOD, JRNL AUTH 5 S.HOELDER,T.D.HEIGHTMAN JRNL TITL STRUCTURE OF THE EPIGENETIC ONCOGENE MMSET AND INHIBITION BY JRNL TITL 2 N-ALKYL SINEFUNGIN DERIVATIVES. JRNL REF ACS CHEM. BIOL. V. 11 3093 2016 JRNL REFN ESSN 1554-8937 JRNL PMID 27571355 JRNL DOI 10.1021/ACSCHEMBIO.6B00308 REMARK 2 REMARK 2 RESOLUTION. 2.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0135 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.75 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 6695 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.184 REMARK 3 R VALUE (WORKING SET) : 0.179 REMARK 3 FREE R VALUE : 0.280 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 340 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.98 REMARK 3 REFLECTION IN BIN (WORKING SET) : 466 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.59 REMARK 3 BIN R VALUE (WORKING SET) : 0.3970 REMARK 3 BIN FREE R VALUE SET COUNT : 21 REMARK 3 BIN FREE R VALUE : 0.5560 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1843 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 37 REMARK 3 SOLVENT ATOMS : 7 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 122.3 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 11.00000 REMARK 3 B22 (A**2) : -9.12000 REMARK 3 B33 (A**2) : -1.88000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.440 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.392 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 42.795 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.964 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.913 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1924 ; 0.010 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 1758 ; 0.003 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2586 ; 1.421 ; 1.942 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4055 ; 0.958 ; 2.975 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 230 ; 7.290 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 100 ;35.938 ;24.200 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 351 ;19.342 ;15.299 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 15 ;16.123 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 265 ; 0.081 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2196 ; 0.000 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 470 ; 0.000 ; 0.021 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 923 ; 7.641 ;19.824 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 922 ; 7.645 ;19.827 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1001 ; 9.072 ;21.326 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1002 ; 9.067 ;21.326 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 698 ;15.761 ;44.577 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 685 ;15.848 ;44.581 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1446 A 1691 REMARK 3 ORIGIN FOR THE GROUP (A): -1.6682 15.3907 -14.9249 REMARK 3 T TENSOR REMARK 3 T11: 0.1698 T22: 0.0942 REMARK 3 T33: 0.0164 T12: 0.0938 REMARK 3 T13: 0.0391 T23: 0.0088 REMARK 3 L TENSOR REMARK 3 L11: 3.3300 L22: 9.2738 REMARK 3 L33: 3.3441 L12: 2.1184 REMARK 3 L13: -0.9789 L23: -1.2922 REMARK 3 S TENSOR REMARK 3 S11: -0.2617 S12: -0.1277 S13: -0.0809 REMARK 3 S21: -0.2072 S22: 0.1587 S23: -0.0336 REMARK 3 S31: 0.1429 S32: 0.0657 S33: 0.1030 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5LSX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 06-SEP-16. REMARK 100 THE DEPOSITION ID IS D_1200001308. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-FEB-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9763 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 300K REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 54976 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 55.190 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 6.300 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: REFMAC REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.10 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M HEPES, PH 7.3, 0.1MKSCN, 25 REMARK 280 -30%MPEG2000, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 24.62200 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 39.42150 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 38.65250 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 39.42150 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 24.62200 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 38.65250 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1417 REMARK 465 HIS A 1418 REMARK 465 HIS A 1419 REMARK 465 HIS A 1420 REMARK 465 HIS A 1421 REMARK 465 HIS A 1422 REMARK 465 HIS A 1423 REMARK 465 SER A 1424 REMARK 465 SER A 1425 REMARK 465 GLY A 1426 REMARK 465 ARG A 1427 REMARK 465 GLU A 1428 REMARK 465 ASN A 1429 REMARK 465 LEU A 1430 REMARK 465 TYR A 1431 REMARK 465 PHE A 1432 REMARK 465 GLN A 1433 REMARK 465 GLY A 1434 REMARK 465 GLU A 1435 REMARK 465 THR A 1436 REMARK 465 SER A 1437 REMARK 465 VAL A 1438 REMARK 465 PRO A 1439 REMARK 465 PRO A 1440 REMARK 465 GLY A 1441 REMARK 465 SER A 1442 REMARK 465 ALA A 1443 REMARK 465 LEU A 1444 REMARK 465 VAL A 1445 REMARK 465 ARG A 1485 REMARK 465 LYS A 1486 REMARK 465 LYS A 1487 REMARK 465 ASN A 1488 REMARK 465 LYS A 1489 REMARK 465 SER A 1490 REMARK 465 HIS A 1491 REMARK 465 ARG A 1492 REMARK 465 ASP A 1493 REMARK 465 ILE A 1494 REMARK 465 LYS A 1495 REMARK 465 ARG A 1496 REMARK 465 TYR A 1671 REMARK 465 GLY A 1672 REMARK 465 LYS A 1673 REMARK 465 GLU A 1692 REMARK 465 ASN A 1693 REMARK 465 ARG A 1694 REMARK 465 VAL A 1695 REMARK 465 SER A 1696 REMARK 465 ILE A 1697 REMARK 465 ARG A 1698 REMARK 465 ALA A 1699 REMARK 465 ALA A 1700 REMARK 465 GLY A 1701 REMARK 465 GLY A 1702 REMARK 465 LYS A 1703 REMARK 465 MET A 1704 REMARK 465 LYS A 1705 REMARK 465 LYS A 1706 REMARK 465 GLU A 1707 REMARK 465 ARG A 1708 REMARK 465 SER A 1709 REMARK 465 ARG A 1710 REMARK 465 LYS A 1711 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A1484 CG CD OE1 OE2 REMARK 470 ILE A1514 CD1 REMARK 470 TYR A1538 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ILE A1602 CD1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASN A 1622 OG SER A 1624 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A1470 162.40 -46.42 REMARK 500 THR A1483 152.41 89.43 REMARK 500 CYS A1499 164.37 -48.06 REMARK 500 ARG A1532 54.88 -93.31 REMARK 500 PRO A1534 -1.53 -59.39 REMARK 500 ASN A1541 49.95 -100.54 REMARK 500 ASN A1573 64.09 37.16 REMARK 500 VAL A1576 -60.59 -93.73 REMARK 500 TYR A1605 51.75 -119.87 REMARK 500 ASN A1611 117.96 -36.91 REMARK 500 TYR A1666 104.85 -57.94 REMARK 500 ALA A1675 122.28 -32.98 REMARK 500 SER A1682 136.52 -25.34 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1802 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A1499 SG REMARK 620 2 CYS A1501 SG 130.6 REMARK 620 3 CYS A1516 SG 105.3 98.2 REMARK 620 4 CYS A1520 SG 114.3 96.5 110.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1803 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A1516 SG REMARK 620 2 CYS A1529 SG 123.4 REMARK 620 3 CYS A1533 SG 107.3 102.6 REMARK 620 4 CYS A1539 SG 113.1 101.1 108.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1801 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A1631 SG REMARK 620 2 CYS A1678 SG 114.4 REMARK 620 3 CYS A1680 SG 99.4 121.1 REMARK 620 4 CYS A1685 SG 96.4 115.7 106.1 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 1801 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 1802 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 1803 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 76O A 1804 DBREF 5LSX A 1433 1711 UNP Q9BYW2 SETD2_HUMAN 1433 1711 SEQADV 5LSX MET A 1417 UNP Q9BYW2 INITIATING METHIONINE SEQADV 5LSX HIS A 1418 UNP Q9BYW2 EXPRESSION TAG SEQADV 5LSX HIS A 1419 UNP Q9BYW2 EXPRESSION TAG SEQADV 5LSX HIS A 1420 UNP Q9BYW2 EXPRESSION TAG SEQADV 5LSX HIS A 1421 UNP Q9BYW2 EXPRESSION TAG SEQADV 5LSX HIS A 1422 UNP Q9BYW2 EXPRESSION TAG SEQADV 5LSX HIS A 1423 UNP Q9BYW2 EXPRESSION TAG SEQADV 5LSX SER A 1424 UNP Q9BYW2 EXPRESSION TAG SEQADV 5LSX SER A 1425 UNP Q9BYW2 EXPRESSION TAG SEQADV 5LSX GLY A 1426 UNP Q9BYW2 EXPRESSION TAG SEQADV 5LSX ARG A 1427 UNP Q9BYW2 EXPRESSION TAG SEQADV 5LSX GLU A 1428 UNP Q9BYW2 EXPRESSION TAG SEQADV 5LSX ASN A 1429 UNP Q9BYW2 EXPRESSION TAG SEQADV 5LSX LEU A 1430 UNP Q9BYW2 EXPRESSION TAG SEQADV 5LSX TYR A 1431 UNP Q9BYW2 EXPRESSION TAG SEQADV 5LSX PHE A 1432 UNP Q9BYW2 EXPRESSION TAG SEQRES 1 A 295 MET HIS HIS HIS HIS HIS HIS SER SER GLY ARG GLU ASN SEQRES 2 A 295 LEU TYR PHE GLN GLY GLU THR SER VAL PRO PRO GLY SER SEQRES 3 A 295 ALA LEU VAL GLY PRO SER CYS VAL MET ASP ASP PHE ARG SEQRES 4 A 295 ASP PRO GLN ARG TRP LYS GLU CYS ALA LYS GLN GLY LYS SEQRES 5 A 295 MET PRO CYS TYR PHE ASP LEU ILE GLU GLU ASN VAL TYR SEQRES 6 A 295 LEU THR GLU ARG LYS LYS ASN LYS SER HIS ARG ASP ILE SEQRES 7 A 295 LYS ARG MET GLN CYS GLU CYS THR PRO LEU SER LYS ASP SEQRES 8 A 295 GLU ARG ALA GLN GLY GLU ILE ALA CYS GLY GLU ASP CYS SEQRES 9 A 295 LEU ASN ARG LEU LEU MET ILE GLU CYS SER SER ARG CYS SEQRES 10 A 295 PRO ASN GLY ASP TYR CYS SER ASN ARG ARG PHE GLN ARG SEQRES 11 A 295 LYS GLN HIS ALA ASP VAL GLU VAL ILE LEU THR GLU LYS SEQRES 12 A 295 LYS GLY TRP GLY LEU ARG ALA ALA LYS ASP LEU PRO SER SEQRES 13 A 295 ASN THR PHE VAL LEU GLU TYR CYS GLY GLU VAL LEU ASP SEQRES 14 A 295 HIS LYS GLU PHE LYS ALA ARG VAL LYS GLU TYR ALA ARG SEQRES 15 A 295 ASN LYS ASN ILE HIS TYR TYR PHE MET ALA LEU LYS ASN SEQRES 16 A 295 ASP GLU ILE ILE ASP ALA THR GLN LYS GLY ASN CYS SER SEQRES 17 A 295 ARG PHE MET ASN HIS SER CYS GLU PRO ASN CYS GLU THR SEQRES 18 A 295 GLN LYS TRP THR VAL ASN GLY GLN LEU ARG VAL GLY PHE SEQRES 19 A 295 PHE THR THR LYS LEU VAL PRO SER GLY SER GLU LEU THR SEQRES 20 A 295 PHE ASP TYR GLN PHE GLN ARG TYR GLY LYS GLU ALA GLN SEQRES 21 A 295 LYS CYS PHE CYS GLY SER ALA ASN CYS ARG GLY TYR LEU SEQRES 22 A 295 GLY GLY GLU ASN ARG VAL SER ILE ARG ALA ALA GLY GLY SEQRES 23 A 295 LYS MET LYS LYS GLU ARG SER ARG LYS HET ZN A1801 1 HET ZN A1802 1 HET ZN A1803 1 HET 76O A1804 64 HETNAM ZN ZINC ION HETNAM 76O [(2~{R},5~{S})-1-[(2~{R},3~{S},4~{R},5~{R})-5-(6- HETNAM 2 76O AMINOPURIN-9-YL)-3,4-BIS(OXIDANYL)OXOLAN-2-YL]-5- HETNAM 3 76O AZANIUMYL-6-OXIDANYL-6-OXIDANYLIDENE-HEXAN-2-YL]- HETNAM 4 76O (PHENYLMETHYL)AZANIUM FORMUL 2 ZN 3(ZN 2+) FORMUL 5 76O C22 H31 N7 O5 2+ FORMUL 6 HOH *7(H2 O) HELIX 1 AA1 ASP A 1452 ARG A 1455 5 4 HELIX 2 AA2 ASP A 1456 GLN A 1466 1 11 HELIX 3 AA3 SER A 1505 GLN A 1511 1 7 HELIX 4 AA4 CYS A 1520 LEU A 1525 1 6 HELIX 5 AA5 ASP A 1585 LYS A 1600 1 16 HELIX 6 AA6 ASN A 1622 MET A 1627 5 6 SHEET 1 AA1 3 SER A1448 VAL A1450 0 SHEET 2 AA1 3 VAL A1552 LEU A1556 -1 O VAL A1554 N CYS A1449 SHEET 3 AA1 3 TRP A1562 ALA A1566 -1 O GLY A1563 N ILE A1555 SHEET 1 AA2 2 ASP A1474 LEU A1475 0 SHEET 2 AA2 2 LYS A1620 GLY A1621 1 O GLY A1621 N ASP A1474 SHEET 1 AA3 3 PHE A1575 GLU A1578 0 SHEET 2 AA3 3 GLN A1645 THR A1652 -1 O PHE A1650 N LEU A1577 SHEET 3 AA3 3 CYS A1635 VAL A1642 -1 N TRP A1640 O ARG A1647 SHEET 1 AA4 3 GLU A1582 LEU A1584 0 SHEET 2 AA4 3 GLU A1613 ASP A1616 -1 O ASP A1616 N GLU A1582 SHEET 3 AA4 3 PHE A1606 LYS A1610 -1 N MET A1607 O ILE A1615 SHEET 1 AA5 2 ASN A1628 HIS A1629 0 SHEET 2 AA5 2 THR A1663 PHE A1664 1 O PHE A1664 N ASN A1628 LINK SG CYS A1499 ZN ZN A1802 1555 1555 1.97 LINK SG CYS A1501 ZN ZN A1802 1555 1555 2.50 LINK SG CYS A1516 ZN ZN A1802 1555 1555 2.38 LINK SG CYS A1516 ZN ZN A1803 1555 1555 2.40 LINK SG CYS A1520 ZN ZN A1802 1555 1555 2.25 LINK SG CYS A1529 ZN ZN A1803 1555 1555 2.14 LINK SG CYS A1533 ZN ZN A1803 1555 1555 2.25 LINK SG CYS A1539 ZN ZN A1803 1555 1555 2.51 LINK SG CYS A1631 ZN ZN A1801 1555 1555 2.27 LINK SG CYS A1678 ZN ZN A1801 1555 1555 2.01 LINK SG CYS A1680 ZN ZN A1801 1555 1555 2.14 LINK SG CYS A1685 ZN ZN A1801 1555 1555 2.34 SITE 1 AC1 4 CYS A1631 CYS A1678 CYS A1680 CYS A1685 SITE 1 AC2 4 CYS A1499 CYS A1501 CYS A1516 CYS A1520 SITE 1 AC3 4 CYS A1516 CYS A1529 CYS A1533 CYS A1539 SITE 1 AC4 18 LYS A1560 GLY A1561 TRP A1562 TYR A1579 SITE 2 AC4 18 HIS A1603 TYR A1604 TYR A1605 PHE A1606 SITE 3 AC4 18 ARG A1625 MET A1627 ASN A1628 HIS A1629 SITE 4 AC4 18 PHE A1650 TYR A1666 GLN A1676 LYS A1677 SITE 5 AC4 18 PHE A1679 CYS A1680 CRYST1 49.244 77.305 78.843 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020307 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012936 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012683 0.00000