HEADER ISOMERASE 08-SEP-16 5LU6 TITLE HEPTOSE ISOMERASE MUTANT - H64Q COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHOSPHOHEPTOSE ISOMERASE; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: SEDOHEPTULOSE 7-PHOSPHATE ISOMERASE; COMPND 5 EC: 5.3.1.28; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BURKHOLDERIA PSEUDOMALLEI; SOURCE 3 ORGANISM_TAXID: 28450; SOURCE 4 GENE: GMHA, DP49_467; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS COOPERATIVITY, ENZYME KINETICS, HYDROGEN BONDS, MOLECULAR MODELLING, KEYWDS 2 QUANTUM MECHANICS, ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR M.VIVOLI,N.J.HARMER,J.PANG REVDAT 4 08-MAY-24 5LU6 1 REMARK REVDAT 3 16-OCT-19 5LU6 1 REMARK REVDAT 2 13-DEC-17 5LU6 1 JRNL REVDAT 1 06-DEC-17 5LU6 0 JRNL AUTH M.VIVOLI,J.PANG,N.J.HARMER JRNL TITL A HALF-SITE MULTIMERIC ENZYME ACHIEVES ITS COOPERATIVITY JRNL TITL 2 WITHOUT CONFORMATIONAL CHANGES. JRNL REF SCI REP V. 7 16529 2017 JRNL REFN ESSN 2045-2322 JRNL PMID 29184087 JRNL DOI 10.1038/S41598-017-16421-2 REMARK 2 REMARK 2 RESOLUTION. 1.67 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0073 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.67 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.31 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 83.8 REMARK 3 NUMBER OF REFLECTIONS : 73739 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.191 REMARK 3 R VALUE (WORKING SET) : 0.189 REMARK 3 FREE R VALUE : 0.226 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3881 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.67 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.71 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5666 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 88.40 REMARK 3 BIN R VALUE (WORKING SET) : 0.2470 REMARK 3 BIN FREE R VALUE SET COUNT : 300 REMARK 3 BIN FREE R VALUE : 0.2890 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5690 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 120 REMARK 3 SOLVENT ATOMS : 699 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.81 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.25000 REMARK 3 B22 (A**2) : 0.52000 REMARK 3 B33 (A**2) : -1.77000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.127 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.121 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.081 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.458 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.944 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.928 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5942 ; 0.019 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 5792 ; 0.010 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8024 ; 1.792 ; 1.988 REMARK 3 BOND ANGLES OTHERS (DEGREES): 13311 ; 1.636 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 788 ; 5.159 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 242 ;38.430 ;24.298 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 989 ;14.391 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 41 ;20.341 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 939 ; 0.108 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6792 ; 0.012 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1289 ; 0.008 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3118 ; 1.755 ; 1.785 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 3116 ; 1.747 ; 1.783 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3892 ; 2.394 ; 2.663 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 3893 ; 2.394 ; 2.664 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2824 ; 2.836 ; 2.209 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2824 ; 2.835 ; 2.209 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 4125 ; 4.233 ; 3.159 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 26432 ; 5.723 ;18.056 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 26433 ; 5.723 ;18.057 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 6 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 3 194 B 3 194 10904 0.09 0.05 REMARK 3 2 A 4 194 C 4 194 10975 0.09 0.05 REMARK 3 3 A 3 194 D 3 194 10739 0.11 0.05 REMARK 3 4 B 4 194 C 4 194 10820 0.10 0.05 REMARK 3 5 B 3 196 D 3 196 10723 0.12 0.05 REMARK 3 6 C 4 194 D 4 194 10821 0.11 0.05 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5LU6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 08-SEP-16. REMARK 100 THE DEPOSITION ID IS D_1200001366. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-FEB-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97950 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 1322870 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.670 REMARK 200 RESOLUTION RANGE LOW (A) : 63.700 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 88.6 REMARK 200 DATA REDUNDANCY : 6.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.87 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.36 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: UNTAGGE GMHA 10 MG PER ML 0.1 M NA REMARK 280 ACETATE, PH 4.6, 8% PEG 4000, BATCH MODE, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 36.80500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 63.54500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 42.30500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 63.54500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 36.80500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 42.30500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 18090 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23590 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -51.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLU A 2 REMARK 465 LYS A 196 REMARK 465 MET B 1 REMARK 465 GLU B 2 REMARK 465 MET C 1 REMARK 465 GLU C 2 REMARK 465 ASN C 3 REMARK 465 LYS C 196 REMARK 465 MET D 1 REMARK 465 GLU D 2 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS B 196 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLN B 64 O HOH B 301 1.76 REMARK 500 OE1 GLU C 5 O HOH C 301 1.83 REMARK 500 NH1 ARG C 72 O HOH C 302 2.01 REMARK 500 OD2 ASP B 98 O HOH B 302 2.01 REMARK 500 OE1 GLU B 68 O HOH B 301 2.04 REMARK 500 OE1 GLU D 27 O HOH D 301 2.06 REMARK 500 O HOH B 433 O HOH B 437 2.15 REMARK 500 O HOH B 312 O HOH B 342 2.15 REMARK 500 OD1 ASN B 114 O HOH B 303 2.19 REMARK 500 OE2 GLU B 68 O HOH B 301 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH C 443 O HOH D 474 4455 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 18 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 ARG A 72 NE - CZ - NH1 ANGL. DEV. = -4.4 DEGREES REMARK 500 ARG A 136 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 ARG A 157 NE - CZ - NH1 ANGL. DEV. = -3.4 DEGREES REMARK 500 ARG A 157 NE - CZ - NH2 ANGL. DEV. = 4.6 DEGREES REMARK 500 ARG B 136 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 ARG B 136 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 ARG C 18 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 ARG C 34 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 ARG C 34 NE - CZ - NH2 ANGL. DEV. = -4.8 DEGREES REMARK 500 ARG C 136 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG C 136 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 ARG D 18 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 ARG D 136 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 ARG D 152 NE - CZ - NH1 ANGL. DEV. = -4.0 DEGREES REMARK 500 ARG D 152 NE - CZ - NH2 ANGL. DEV. = 3.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 71 -117.09 -89.09 REMARK 500 PHE A 73 -93.32 -114.00 REMARK 500 SER B 71 -100.83 -92.04 REMARK 500 PHE B 73 -80.91 -112.56 REMARK 500 SER C 71 -98.17 -89.47 REMARK 500 PHE C 73 -80.25 -111.84 REMARK 500 SER D 71 -109.61 -89.90 REMARK 500 PHE D 73 -85.48 -116.38 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 471 DISTANCE = 5.88 ANGSTROMS REMARK 525 HOH B 473 DISTANCE = 5.90 ANGSTROMS REMARK 525 HOH B 474 DISTANCE = 5.91 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue I22 A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue I22 B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PGE B 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue I22 C 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO C 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue I22 D 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO D 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO D 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO D 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL D 205 DBREF1 5LU6 A 1 196 UNP A0A095TT41_BURPE DBREF2 5LU6 A A0A095TT41 1 196 DBREF1 5LU6 B 1 196 UNP A0A095TT41_BURPE DBREF2 5LU6 B A0A095TT41 1 196 DBREF1 5LU6 C 1 196 UNP A0A095TT41_BURPE DBREF2 5LU6 C A0A095TT41 1 196 DBREF1 5LU6 D 1 196 UNP A0A095TT41_BURPE DBREF2 5LU6 D A0A095TT41 1 196 SEQADV 5LU6 ARG A 34 UNP A0A095TT4 GLN 34 CONFLICT SEQADV 5LU6 GLN A 64 UNP A0A095TT4 HIS 64 ENGINEERED MUTATION SEQADV 5LU6 ARG B 34 UNP A0A095TT4 GLN 34 CONFLICT SEQADV 5LU6 GLN B 64 UNP A0A095TT4 HIS 64 ENGINEERED MUTATION SEQADV 5LU6 ARG C 34 UNP A0A095TT4 GLN 34 CONFLICT SEQADV 5LU6 GLN C 64 UNP A0A095TT4 HIS 64 ENGINEERED MUTATION SEQADV 5LU6 ARG D 34 UNP A0A095TT4 GLN 34 CONFLICT SEQADV 5LU6 GLN D 64 UNP A0A095TT4 HIS 64 ENGINEERED MUTATION SEQRES 1 A 196 MET GLU ASN ARG GLU LEU THR TYR ILE THR ASN SER ILE SEQRES 2 A 196 ALA GLU ALA GLN ARG VAL MET ALA ALA MET LEU ALA ASP SEQRES 3 A 196 GLU ARG LEU LEU ALA THR VAL ARG LYS VAL ALA ASP ALA SEQRES 4 A 196 CYS ILE ALA SER ILE ALA GLN GLY GLY LYS VAL LEU LEU SEQRES 5 A 196 ALA GLY ASN GLY GLY SER ALA ALA ASP ALA GLN GLN ILE SEQRES 6 A 196 ALA GLY GLU PHE VAL SER ARG PHE ALA PHE ASP ARG PRO SEQRES 7 A 196 GLY LEU PRO ALA VAL ALA LEU THR THR ASP THR SER ILE SEQRES 8 A 196 LEU THR ALA ILE GLY ASN ASP TYR GLY TYR GLU LYS LEU SEQRES 9 A 196 PHE SER ARG GLN VAL GLN ALA LEU GLY ASN GLU GLY ASP SEQRES 10 A 196 VAL LEU ILE GLY TYR SER THR SER GLY LYS SER PRO ASN SEQRES 11 A 196 ILE LEU ALA ALA PHE ARG GLU ALA LYS ALA LYS GLY MET SEQRES 12 A 196 THR CYS VAL GLY PHE THR GLY ASN ARG GLY GLY GLU MET SEQRES 13 A 196 ARG GLU LEU CYS ASP LEU LEU LEU GLU VAL PRO SER ALA SEQRES 14 A 196 ASP THR PRO LYS ILE GLN GLU GLY HIS LEU VAL LEU GLY SEQRES 15 A 196 HIS ILE VAL CYS GLY LEU VAL GLU HIS SER ILE PHE GLY SEQRES 16 A 196 LYS SEQRES 1 B 196 MET GLU ASN ARG GLU LEU THR TYR ILE THR ASN SER ILE SEQRES 2 B 196 ALA GLU ALA GLN ARG VAL MET ALA ALA MET LEU ALA ASP SEQRES 3 B 196 GLU ARG LEU LEU ALA THR VAL ARG LYS VAL ALA ASP ALA SEQRES 4 B 196 CYS ILE ALA SER ILE ALA GLN GLY GLY LYS VAL LEU LEU SEQRES 5 B 196 ALA GLY ASN GLY GLY SER ALA ALA ASP ALA GLN GLN ILE SEQRES 6 B 196 ALA GLY GLU PHE VAL SER ARG PHE ALA PHE ASP ARG PRO SEQRES 7 B 196 GLY LEU PRO ALA VAL ALA LEU THR THR ASP THR SER ILE SEQRES 8 B 196 LEU THR ALA ILE GLY ASN ASP TYR GLY TYR GLU LYS LEU SEQRES 9 B 196 PHE SER ARG GLN VAL GLN ALA LEU GLY ASN GLU GLY ASP SEQRES 10 B 196 VAL LEU ILE GLY TYR SER THR SER GLY LYS SER PRO ASN SEQRES 11 B 196 ILE LEU ALA ALA PHE ARG GLU ALA LYS ALA LYS GLY MET SEQRES 12 B 196 THR CYS VAL GLY PHE THR GLY ASN ARG GLY GLY GLU MET SEQRES 13 B 196 ARG GLU LEU CYS ASP LEU LEU LEU GLU VAL PRO SER ALA SEQRES 14 B 196 ASP THR PRO LYS ILE GLN GLU GLY HIS LEU VAL LEU GLY SEQRES 15 B 196 HIS ILE VAL CYS GLY LEU VAL GLU HIS SER ILE PHE GLY SEQRES 16 B 196 LYS SEQRES 1 C 196 MET GLU ASN ARG GLU LEU THR TYR ILE THR ASN SER ILE SEQRES 2 C 196 ALA GLU ALA GLN ARG VAL MET ALA ALA MET LEU ALA ASP SEQRES 3 C 196 GLU ARG LEU LEU ALA THR VAL ARG LYS VAL ALA ASP ALA SEQRES 4 C 196 CYS ILE ALA SER ILE ALA GLN GLY GLY LYS VAL LEU LEU SEQRES 5 C 196 ALA GLY ASN GLY GLY SER ALA ALA ASP ALA GLN GLN ILE SEQRES 6 C 196 ALA GLY GLU PHE VAL SER ARG PHE ALA PHE ASP ARG PRO SEQRES 7 C 196 GLY LEU PRO ALA VAL ALA LEU THR THR ASP THR SER ILE SEQRES 8 C 196 LEU THR ALA ILE GLY ASN ASP TYR GLY TYR GLU LYS LEU SEQRES 9 C 196 PHE SER ARG GLN VAL GLN ALA LEU GLY ASN GLU GLY ASP SEQRES 10 C 196 VAL LEU ILE GLY TYR SER THR SER GLY LYS SER PRO ASN SEQRES 11 C 196 ILE LEU ALA ALA PHE ARG GLU ALA LYS ALA LYS GLY MET SEQRES 12 C 196 THR CYS VAL GLY PHE THR GLY ASN ARG GLY GLY GLU MET SEQRES 13 C 196 ARG GLU LEU CYS ASP LEU LEU LEU GLU VAL PRO SER ALA SEQRES 14 C 196 ASP THR PRO LYS ILE GLN GLU GLY HIS LEU VAL LEU GLY SEQRES 15 C 196 HIS ILE VAL CYS GLY LEU VAL GLU HIS SER ILE PHE GLY SEQRES 16 C 196 LYS SEQRES 1 D 196 MET GLU ASN ARG GLU LEU THR TYR ILE THR ASN SER ILE SEQRES 2 D 196 ALA GLU ALA GLN ARG VAL MET ALA ALA MET LEU ALA ASP SEQRES 3 D 196 GLU ARG LEU LEU ALA THR VAL ARG LYS VAL ALA ASP ALA SEQRES 4 D 196 CYS ILE ALA SER ILE ALA GLN GLY GLY LYS VAL LEU LEU SEQRES 5 D 196 ALA GLY ASN GLY GLY SER ALA ALA ASP ALA GLN GLN ILE SEQRES 6 D 196 ALA GLY GLU PHE VAL SER ARG PHE ALA PHE ASP ARG PRO SEQRES 7 D 196 GLY LEU PRO ALA VAL ALA LEU THR THR ASP THR SER ILE SEQRES 8 D 196 LEU THR ALA ILE GLY ASN ASP TYR GLY TYR GLU LYS LEU SEQRES 9 D 196 PHE SER ARG GLN VAL GLN ALA LEU GLY ASN GLU GLY ASP SEQRES 10 D 196 VAL LEU ILE GLY TYR SER THR SER GLY LYS SER PRO ASN SEQRES 11 D 196 ILE LEU ALA ALA PHE ARG GLU ALA LYS ALA LYS GLY MET SEQRES 12 D 196 THR CYS VAL GLY PHE THR GLY ASN ARG GLY GLY GLU MET SEQRES 13 D 196 ARG GLU LEU CYS ASP LEU LEU LEU GLU VAL PRO SER ALA SEQRES 14 D 196 ASP THR PRO LYS ILE GLN GLU GLY HIS LEU VAL LEU GLY SEQRES 15 D 196 HIS ILE VAL CYS GLY LEU VAL GLU HIS SER ILE PHE GLY SEQRES 16 D 196 LYS HET I22 A 201 18 HET EDO A 202 4 HET GOL A 203 6 HET I22 B 201 18 HET GOL B 202 6 HET PGE B 203 10 HET I22 C 201 18 HET EDO C 202 4 HET I22 D 201 18 HET EDO D 202 4 HET EDO D 203 4 HET EDO D 204 4 HET GOL D 205 6 HETNAM I22 D-ALTRO-HEPT-2-ULOSE 7-PHOSPHATE HETNAM EDO 1,2-ETHANEDIOL HETNAM GOL GLYCEROL HETNAM PGE TRIETHYLENE GLYCOL HETSYN I22 7-O-PHOSPHONO-D-ALTRO-HEPT-2-ULOSE; SEDOHEPTULOSE 7- HETSYN 2 I22 PHOSPHATE HETSYN EDO ETHYLENE GLYCOL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 5 I22 4(C7 H15 O10 P) FORMUL 6 EDO 5(C2 H6 O2) FORMUL 7 GOL 3(C3 H8 O3) FORMUL 10 PGE C6 H14 O4 FORMUL 18 HOH *699(H2 O) HELIX 1 AA1 ASN A 3 ASP A 26 1 24 HELIX 2 AA2 ASP A 26 GLN A 46 1 21 HELIX 3 AA3 GLY A 56 SER A 71 1 16 HELIX 4 AA4 ASP A 88 GLY A 100 1 13 HELIX 5 AA5 TYR A 101 LEU A 104 5 4 HELIX 6 AA6 PHE A 105 GLY A 113 1 9 HELIX 7 AA7 SER A 128 LYS A 141 1 14 HELIX 8 AA8 GLU A 155 CYS A 160 1 6 HELIX 9 AA9 ASP A 170 GLY A 195 1 26 HELIX 10 AB1 ARG B 4 ASP B 26 1 23 HELIX 11 AB2 ASP B 26 GLN B 46 1 21 HELIX 12 AB3 GLY B 56 SER B 71 1 16 HELIX 13 AB4 ASP B 88 GLY B 100 1 13 HELIX 14 AB5 TYR B 101 LEU B 104 5 4 HELIX 15 AB6 PHE B 105 GLY B 113 1 9 HELIX 16 AB7 SER B 128 LYS B 141 1 14 HELIX 17 AB8 GLU B 155 CYS B 160 1 6 HELIX 18 AB9 ASP B 170 GLY B 195 1 26 HELIX 19 AC1 GLU C 5 ASP C 26 1 22 HELIX 20 AC2 ASP C 26 GLN C 46 1 21 HELIX 21 AC3 GLY C 56 SER C 71 1 16 HELIX 22 AC4 ASP C 88 GLY C 100 1 13 HELIX 23 AC5 TYR C 101 LEU C 104 5 4 HELIX 24 AC6 PHE C 105 GLY C 113 1 9 HELIX 25 AC7 SER C 128 LYS C 141 1 14 HELIX 26 AC8 GLU C 155 CYS C 160 1 6 HELIX 27 AC9 ASP C 170 GLY C 195 1 26 HELIX 28 AD1 ARG D 4 ASP D 26 1 23 HELIX 29 AD2 ASP D 26 GLN D 46 1 21 HELIX 30 AD3 GLY D 56 SER D 71 1 16 HELIX 31 AD4 ASP D 88 TYR D 99 1 12 HELIX 32 AD5 GLY D 100 LEU D 104 5 5 HELIX 33 AD6 PHE D 105 GLY D 113 1 9 HELIX 34 AD7 SER D 128 LYS D 141 1 14 HELIX 35 AD8 GLU D 155 CYS D 160 1 6 HELIX 36 AD9 ASP D 170 GLY D 195 1 26 SHEET 1 AA1 5 ALA A 82 ALA A 84 0 SHEET 2 AA1 5 VAL A 50 ALA A 53 1 N VAL A 50 O VAL A 83 SHEET 3 AA1 5 VAL A 118 TYR A 122 1 O ILE A 120 N LEU A 51 SHEET 4 AA1 5 THR A 144 THR A 149 1 O VAL A 146 N LEU A 119 SHEET 5 AA1 5 LEU A 162 GLU A 165 1 O LEU A 164 N THR A 149 SHEET 1 AA2 5 ALA B 82 ALA B 84 0 SHEET 2 AA2 5 VAL B 50 ALA B 53 1 N VAL B 50 O VAL B 83 SHEET 3 AA2 5 VAL B 118 TYR B 122 1 O VAL B 118 N LEU B 51 SHEET 4 AA2 5 THR B 144 THR B 149 1 O VAL B 146 N LEU B 119 SHEET 5 AA2 5 LEU B 162 GLU B 165 1 O LEU B 164 N THR B 149 SHEET 1 AA3 5 ALA C 82 ALA C 84 0 SHEET 2 AA3 5 VAL C 50 ALA C 53 1 N VAL C 50 O VAL C 83 SHEET 3 AA3 5 VAL C 118 TYR C 122 1 O VAL C 118 N LEU C 51 SHEET 4 AA3 5 THR C 144 THR C 149 1 O VAL C 146 N LEU C 119 SHEET 5 AA3 5 LEU C 162 GLU C 165 1 O LEU C 164 N THR C 149 SHEET 1 AA4 5 ALA D 82 ALA D 84 0 SHEET 2 AA4 5 VAL D 50 ALA D 53 1 N VAL D 50 O VAL D 83 SHEET 3 AA4 5 VAL D 118 TYR D 122 1 O VAL D 118 N LEU D 51 SHEET 4 AA4 5 THR D 144 THR D 149 1 O VAL D 146 N LEU D 119 SHEET 5 AA4 5 LEU D 162 GLU D 165 1 O LEU D 164 N THR D 149 SITE 1 AC1 16 ASN A 55 GLY A 56 GLY A 57 SER A 123 SITE 2 AC1 16 THR A 124 SER A 125 SER A 128 THR A 171 SITE 3 AC1 16 GLN A 175 HOH A 319 HOH A 354 HOH A 390 SITE 4 AC1 16 ASN B 97 ASP B 98 GLU D 68 PHE D 73 SITE 1 AC2 4 LYS A 35 ASP A 161 GOL A 203 HOH A 385 SITE 1 AC3 3 THR A 32 LYS A 35 EDO A 202 SITE 1 AC4 19 ASN A 97 ASP A 98 ASN B 55 GLY B 56 SITE 2 AC4 19 GLY B 57 SER B 123 THR B 124 SER B 125 SITE 3 AC4 19 SER B 128 THR B 171 GLN B 175 HOH B 306 SITE 4 AC4 19 HOH B 335 HOH B 336 HOH B 384 HOH B 390 SITE 5 AC4 19 GLU C 68 ARG C 72 PHE C 73 SITE 1 AC5 5 ASP B 161 LEU B 162 LEU B 163 PGE B 203 SITE 2 AC5 5 HOH B 326 SITE 1 AC6 7 ALA B 31 THR B 32 LYS B 35 LEU B 162 SITE 2 AC6 7 GOL B 202 HOH B 310 HOH B 422 SITE 1 AC7 18 GLU B 68 ARG B 72 PHE B 73 ASN C 55 SITE 2 AC7 18 GLY C 56 GLY C 57 SER C 123 THR C 124 SITE 3 AC7 18 SER C 125 SER C 128 THR C 171 GLN C 175 SITE 4 AC7 18 HOH C 319 HOH C 325 HOH C 338 HOH C 359 SITE 5 AC7 18 ASN D 97 ASP D 98 SITE 1 AC8 6 ALA C 14 GLN C 17 ARG C 18 HOH C 312 SITE 2 AC8 6 HOH C 331 HOH C 384 SITE 1 AC9 20 GLU A 68 ARG A 72 HOH A 381 ASN C 97 SITE 2 AC9 20 ASP C 98 ASN D 55 GLY D 56 GLY D 57 SITE 3 AC9 20 SER D 123 THR D 124 SER D 125 SER D 128 SITE 4 AC9 20 THR D 171 GLN D 175 LYS D 196 HOH D 319 SITE 5 AC9 20 HOH D 328 HOH D 338 HOH D 342 HOH D 344 SITE 1 AD1 5 ARG D 157 CYS D 160 ASP D 161 LEU D 163 SITE 2 AD1 5 HOH D 312 SITE 1 AD2 4 GLU B 115 GLY B 142 GLN D 17 ARG D 18 SITE 1 AD3 2 ARG D 157 HOH D 309 SITE 1 AD4 4 GLY D 113 ASN D 114 GLU D 115 LYS D 141 CRYST1 73.610 84.610 127.090 90.00 90.00 90.00 P 21 21 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013585 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011819 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007868 0.00000