HEADER TRANSFERASE 12-SEP-16 5LV4 TITLE CRYSTAL STRUCTURE OF MOUSE PRMT6 IN COMPLEX WITH INHIBITOR LH1236 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN ARGININE N-METHYLTRANSFERASE 6; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: HISTONE-ARGININE N-METHYLTRANSFERASE PRMT6; COMPND 5 EC: 2.1.1.319; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: PRMT6, HRMT1L6; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TRANSFERASE, S-ADENOSYL-L-METHIONINE EXPDTA X-RAY DIFFRACTION AUTHOR V.CURA,N.MARECHAL,N.TROFFER-CHARLIER,L.HALBY,P.ARIMONDO,L.BONNEFOND, AUTHOR 2 J.CAVARELLI REVDAT 3 17-JAN-24 5LV4 1 REMARK REVDAT 2 02-MAY-18 5LV4 1 JRNL REVDAT 1 20-SEP-17 5LV4 0 JRNL AUTH L.HALBY,N.MARECHAL,D.PECHALRIEU,V.CURA,D.M.FRANCHINI,C.FAUX, JRNL AUTH 2 F.ALBY,N.TROFFER-CHARLIER,S.KUDITHIPUDI,A.JELTSCH,W.AOUADI, JRNL AUTH 3 E.DECROLY,J.C.GUILLEMOT,P.PAGE,C.FERROUD,L.BONNEFOND, JRNL AUTH 4 D.GUIANVARC'H,J.CAVARELLI,P.B.ARIMONDO JRNL TITL HIJACKING DNA METHYLTRANSFERASE TRANSITION STATE ANALOGUES JRNL TITL 2 TO PRODUCE CHEMICAL SCAFFOLDS FOR PRMT INHIBITORS. JRNL REF PHILOS. TRANS. R. SOC. V. 373 2018 JRNL REF 2 LOND., B, BIOL. SCI. JRNL REFN ESSN 1471-2970 JRNL PMID 29685976 JRNL DOI 10.1098/RSTB.2017.0072 REMARK 2 REMARK 2 RESOLUTION. 1.66 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10PRE_2104: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.66 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.08 REMARK 3 MIN(FOBS/SIGMA_FOBS) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 44183 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.160 REMARK 3 R VALUE (WORKING SET) : 0.159 REMARK 3 FREE R VALUE : 0.188 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2209 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 41.0894 - 4.1766 1.00 2674 141 0.1419 0.1608 REMARK 3 2 4.1766 - 3.3155 1.00 2616 139 0.1353 0.1656 REMARK 3 3 3.3155 - 2.8966 1.00 2649 138 0.1516 0.1819 REMARK 3 4 2.8966 - 2.6318 1.00 2647 139 0.1498 0.1824 REMARK 3 5 2.6318 - 2.4432 1.00 2623 139 0.1426 0.1727 REMARK 3 6 2.4432 - 2.2991 1.00 2646 139 0.1532 0.1850 REMARK 3 7 2.2991 - 2.1840 1.00 2606 136 0.1485 0.1815 REMARK 3 8 2.1840 - 2.0889 1.00 2630 139 0.1582 0.1928 REMARK 3 9 2.0889 - 2.0085 1.00 2630 141 0.1615 0.2312 REMARK 3 10 2.0085 - 1.9392 1.00 2607 134 0.1756 0.1900 REMARK 3 11 1.9392 - 1.8786 1.00 2633 137 0.1948 0.2037 REMARK 3 12 1.8786 - 1.8249 1.00 2632 141 0.2157 0.2332 REMARK 3 13 1.8249 - 1.7768 1.00 2612 134 0.2200 0.2845 REMARK 3 14 1.7768 - 1.7335 1.00 2659 141 0.2414 0.2815 REMARK 3 15 1.7335 - 1.6941 1.00 2604 137 0.2616 0.2802 REMARK 3 16 1.6941 - 1.6580 0.96 2506 134 0.2885 0.3109 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.170 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.850 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 21.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 2604 REMARK 3 ANGLE : 1.079 3540 REMARK 3 CHIRALITY : 0.093 391 REMARK 3 PLANARITY : 0.007 476 REMARK 3 DIHEDRAL : 21.929 978 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 56 THROUGH 153 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.4289 -18.0789 6.2575 REMARK 3 T TENSOR REMARK 3 T11: 0.1591 T22: 0.1723 REMARK 3 T33: 0.1740 T12: -0.0279 REMARK 3 T13: 0.0058 T23: 0.0052 REMARK 3 L TENSOR REMARK 3 L11: 0.9760 L22: 0.6580 REMARK 3 L33: 1.1849 L12: -0.4213 REMARK 3 L13: 0.4070 L23: -0.6495 REMARK 3 S TENSOR REMARK 3 S11: 0.0843 S12: -0.0141 S13: -0.1559 REMARK 3 S21: -0.0075 S22: 0.0014 S23: 0.0277 REMARK 3 S31: 0.1680 S32: -0.0981 S33: 0.0001 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 154 THROUGH 202 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.9636 -2.1189 4.4011 REMARK 3 T TENSOR REMARK 3 T11: 0.1458 T22: 0.2178 REMARK 3 T33: 0.1927 T12: 0.0137 REMARK 3 T13: 0.0009 T23: 0.0099 REMARK 3 L TENSOR REMARK 3 L11: 0.3858 L22: 0.3497 REMARK 3 L33: 0.3355 L12: -0.1399 REMARK 3 L13: -0.2935 L23: 0.1073 REMARK 3 S TENSOR REMARK 3 S11: 0.0660 S12: 0.0943 S13: 0.0003 REMARK 3 S21: -0.0504 S22: -0.1030 S23: 0.0569 REMARK 3 S31: -0.0413 S32: -0.0961 S33: -0.0001 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 203 THROUGH 253 ) REMARK 3 ORIGIN FOR THE GROUP (A): 40.2415 16.5518 12.9866 REMARK 3 T TENSOR REMARK 3 T11: 0.2123 T22: 0.2466 REMARK 3 T33: 0.2143 T12: -0.0051 REMARK 3 T13: 0.0098 T23: 0.0153 REMARK 3 L TENSOR REMARK 3 L11: 0.7018 L22: -0.0997 REMARK 3 L33: -0.1073 L12: 0.0245 REMARK 3 L13: -0.0038 L23: 0.1555 REMARK 3 S TENSOR REMARK 3 S11: 0.1333 S12: 0.0184 S13: 0.0966 REMARK 3 S21: 0.1398 S22: -0.0477 S23: 0.0374 REMARK 3 S31: 0.0380 S32: 0.0007 S33: 0.0000 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 254 THROUGH 281 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.1819 9.7517 4.7072 REMARK 3 T TENSOR REMARK 3 T11: 0.2005 T22: 0.2503 REMARK 3 T33: 0.2707 T12: 0.0203 REMARK 3 T13: -0.0102 T23: 0.0418 REMARK 3 L TENSOR REMARK 3 L11: 0.1865 L22: 0.0467 REMARK 3 L33: 0.2554 L12: 0.0488 REMARK 3 L13: -0.2217 L23: -0.0055 REMARK 3 S TENSOR REMARK 3 S11: -0.0030 S12: 0.0977 S13: 0.1470 REMARK 3 S21: -0.1225 S22: 0.1525 S23: 0.2681 REMARK 3 S31: -0.1961 S32: -0.1461 S33: 0.0419 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 282 THROUGH 338 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.2519 11.1064 14.7605 REMARK 3 T TENSOR REMARK 3 T11: 0.1873 T22: 0.1888 REMARK 3 T33: 0.1877 T12: -0.0156 REMARK 3 T13: 0.0199 T23: 0.0072 REMARK 3 L TENSOR REMARK 3 L11: 0.4741 L22: 0.4148 REMARK 3 L33: 0.6335 L12: -0.0957 REMARK 3 L13: -0.3335 L23: 0.0000 REMARK 3 S TENSOR REMARK 3 S11: 0.1550 S12: -0.0781 S13: 0.0269 REMARK 3 S21: 0.2463 S22: -0.0891 S23: -0.0438 REMARK 3 S31: -0.0714 S32: 0.0729 S33: 0.0003 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 339 THROUGH 378 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.3823 16.3563 1.1690 REMARK 3 T TENSOR REMARK 3 T11: 0.2177 T22: 0.2047 REMARK 3 T33: 0.2163 T12: 0.0190 REMARK 3 T13: 0.0394 T23: 0.0448 REMARK 3 L TENSOR REMARK 3 L11: 0.2099 L22: 0.4340 REMARK 3 L33: 0.8138 L12: 0.2161 REMARK 3 L13: 0.0482 L23: -0.4853 REMARK 3 S TENSOR REMARK 3 S11: 0.1742 S12: 0.1315 S13: 0.1082 REMARK 3 S21: -0.1892 S22: -0.0687 S23: -0.0518 REMARK 3 S31: -0.0157 S32: -0.0560 S33: 0.0037 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5LV4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 12-SEP-16. REMARK 100 THE DEPOSITION ID IS D_1200000964. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-JUN-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97779 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 44207 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.660 REMARK 200 RESOLUTION RANGE LOW (A) : 41.080 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 7.200 REMARK 200 R MERGE (I) : 0.14200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.66 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.69 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.5 REMARK 200 DATA REDUNDANCY IN SHELL : 5.50 REMARK 200 R MERGE FOR SHELL (I) : 1.50800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4C07 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.52 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.14 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: HEPES NAOH PH 8.0 100 MM PEG 6000 10 % REMARK 280 MGCL2 200 MM, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 41 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 3555 -Y,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X,Z+3/4 REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X,-Y,Z REMARK 290 7555 -Y+1/2,X,Z+3/4 REMARK 290 8555 Y,-X+1/2,Z+1/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 39.92550 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 39.92550 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 59.86900 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 39.92550 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 29.93450 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 39.92550 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 89.80350 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 39.92550 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 39.92550 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 59.86900 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 -1.000000 0.000000 39.92550 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 89.80350 REMARK 290 SMTRY1 8 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 39.92550 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 29.93450 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3240 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26630 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -33.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 79.85100 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -24 REMARK 465 GLY A -23 REMARK 465 SER A -22 REMARK 465 SER A -21 REMARK 465 HIS A -20 REMARK 465 HIS A -19 REMARK 465 HIS A -18 REMARK 465 HIS A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 SER A -14 REMARK 465 SER A -13 REMARK 465 GLY A -12 REMARK 465 THR A -11 REMARK 465 GLY A -10 REMARK 465 SER A -9 REMARK 465 GLY A -8 REMARK 465 GLU A -7 REMARK 465 ASN A -6 REMARK 465 LEU A -5 REMARK 465 TYR A -4 REMARK 465 PHE A -3 REMARK 465 GLN A -2 REMARK 465 GLY A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 LEU A 3 REMARK 465 SER A 4 REMARK 465 LYS A 5 REMARK 465 LYS A 6 REMARK 465 ARG A 7 REMARK 465 LYS A 8 REMARK 465 LEU A 9 REMARK 465 GLU A 10 REMARK 465 SER A 11 REMARK 465 GLY A 12 REMARK 465 ASP A 13 REMARK 465 SER A 14 REMARK 465 GLY A 15 REMARK 465 GLY A 16 REMARK 465 ALA A 17 REMARK 465 GLY A 18 REMARK 465 ALA A 19 REMARK 465 GLY A 20 REMARK 465 GLY A 21 REMARK 465 GLU A 22 REMARK 465 GLY A 23 REMARK 465 ALA A 24 REMARK 465 GLU A 25 REMARK 465 GLU A 26 REMARK 465 GLU A 27 REMARK 465 ASN A 28 REMARK 465 GLY A 29 REMARK 465 GLY A 30 REMARK 465 GLU A 31 REMARK 465 GLN A 32 REMARK 465 GLU A 33 REMARK 465 ALA A 34 REMARK 465 ALA A 35 REMARK 465 PRO A 36 REMARK 465 PRO A 37 REMARK 465 ARG A 38 REMARK 465 PRO A 39 REMARK 465 ARG A 40 REMARK 465 ARG A 41 REMARK 465 THR A 42 REMARK 465 LYS A 43 REMARK 465 SER A 44 REMARK 465 GLU A 45 REMARK 465 ARG A 46 REMARK 465 ASP A 47 REMARK 465 GLN A 48 REMARK 465 LEU A 49 REMARK 465 TYR A 50 REMARK 465 TYR A 51 REMARK 465 GLU A 52 REMARK 465 CYS A 53 REMARK 465 TYR A 54 REMARK 465 SER A 55 REMARK 465 GLY A 301 REMARK 465 GLY A 302 REMARK 465 ASP A 303 REMARK 465 SER A 304 REMARK 465 GLU A 305 REMARK 465 LYS A 306 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HG SER A 311 HD1 HIS A 316 1.08 REMARK 500 HH22 ARG A 177 O HOH A 503 1.37 REMARK 500 HH12 ARG A 231 O HOH A 508 1.39 REMARK 500 OD1 ASP A 134 O HOH A 501 1.92 REMARK 500 OE1 GLN A 213 O HOH A 502 1.95 REMARK 500 O HOH A 808 O HOH A 824 2.00 REMARK 500 O HOH A 811 O HOH A 827 2.05 REMARK 500 O HOH A 732 O HOH A 795 2.07 REMARK 500 NH2 ARG A 177 O HOH A 503 2.07 REMARK 500 O HOH A 763 O HOH A 784 2.07 REMARK 500 O GLU A 133 O HOH A 504 2.13 REMARK 500 O HOH A 758 O HOH A 798 2.14 REMARK 500 O HOH A 819 O HOH A 830 2.15 REMARK 500 O HOH A 702 O HOH A 743 2.16 REMARK 500 OE1 GLU A 62 O HOH A 505 2.16 REMARK 500 OG SER A 245 OE1 GLU A 247 2.16 REMARK 500 OE2 GLU A 260 O HOH A 506 2.17 REMARK 500 O HOH A 721 O HOH A 781 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 164 -51.59 66.58 REMARK 500 GLU A 167 -19.09 91.96 REMARK 500 LYS A 322 -139.56 49.29 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 78K A 401 DBREF 5LV4 A 1 378 UNP Q6NZB1 ANM6_MOUSE 1 378 SEQADV 5LV4 MET A -24 UNP Q6NZB1 INITIATING METHIONINE SEQADV 5LV4 GLY A -23 UNP Q6NZB1 EXPRESSION TAG SEQADV 5LV4 SER A -22 UNP Q6NZB1 EXPRESSION TAG SEQADV 5LV4 SER A -21 UNP Q6NZB1 EXPRESSION TAG SEQADV 5LV4 HIS A -20 UNP Q6NZB1 EXPRESSION TAG SEQADV 5LV4 HIS A -19 UNP Q6NZB1 EXPRESSION TAG SEQADV 5LV4 HIS A -18 UNP Q6NZB1 EXPRESSION TAG SEQADV 5LV4 HIS A -17 UNP Q6NZB1 EXPRESSION TAG SEQADV 5LV4 HIS A -16 UNP Q6NZB1 EXPRESSION TAG SEQADV 5LV4 HIS A -15 UNP Q6NZB1 EXPRESSION TAG SEQADV 5LV4 SER A -14 UNP Q6NZB1 EXPRESSION TAG SEQADV 5LV4 SER A -13 UNP Q6NZB1 EXPRESSION TAG SEQADV 5LV4 GLY A -12 UNP Q6NZB1 EXPRESSION TAG SEQADV 5LV4 THR A -11 UNP Q6NZB1 EXPRESSION TAG SEQADV 5LV4 GLY A -10 UNP Q6NZB1 EXPRESSION TAG SEQADV 5LV4 SER A -9 UNP Q6NZB1 EXPRESSION TAG SEQADV 5LV4 GLY A -8 UNP Q6NZB1 EXPRESSION TAG SEQADV 5LV4 GLU A -7 UNP Q6NZB1 EXPRESSION TAG SEQADV 5LV4 ASN A -6 UNP Q6NZB1 EXPRESSION TAG SEQADV 5LV4 LEU A -5 UNP Q6NZB1 EXPRESSION TAG SEQADV 5LV4 TYR A -4 UNP Q6NZB1 EXPRESSION TAG SEQADV 5LV4 PHE A -3 UNP Q6NZB1 EXPRESSION TAG SEQADV 5LV4 GLN A -2 UNP Q6NZB1 EXPRESSION TAG SEQADV 5LV4 GLY A -1 UNP Q6NZB1 EXPRESSION TAG SEQADV 5LV4 HIS A 0 UNP Q6NZB1 EXPRESSION TAG SEQADV 5LV4 LEU A 315 UNP Q6NZB1 PHE 315 CONFLICT SEQRES 1 A 403 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 403 THR GLY SER GLY GLU ASN LEU TYR PHE GLN GLY HIS MET SEQRES 3 A 403 SER LEU SER LYS LYS ARG LYS LEU GLU SER GLY ASP SER SEQRES 4 A 403 GLY GLY ALA GLY ALA GLY GLY GLU GLY ALA GLU GLU GLU SEQRES 5 A 403 ASN GLY GLY GLU GLN GLU ALA ALA PRO PRO ARG PRO ARG SEQRES 6 A 403 ARG THR LYS SER GLU ARG ASP GLN LEU TYR TYR GLU CYS SEQRES 7 A 403 TYR SER ASP VAL SER VAL HIS GLU GLU MET ILE ALA ASP SEQRES 8 A 403 GLN VAL ARG THR GLU ALA TYR ARG LEU GLY ILE LEU LYS SEQRES 9 A 403 ASN TRP ALA ALA LEU ARG GLY LYS THR VAL LEU ASP VAL SEQRES 10 A 403 GLY ALA GLY THR GLY ILE LEU SER ILE PHE CYS ALA GLN SEQRES 11 A 403 ALA GLY ALA ARG ARG VAL TYR ALA VAL GLU ALA SER ALA SEQRES 12 A 403 ILE TRP GLN GLN ALA ARG GLU VAL VAL ARG LEU ASN GLY SEQRES 13 A 403 LEU GLU ASP ARG VAL HIS VAL LEU PRO GLY PRO VAL GLU SEQRES 14 A 403 THR VAL GLU LEU PRO GLU ARG VAL ASP ALA ILE VAL SER SEQRES 15 A 403 GLU TRP MET GLY TYR GLY LEU LEU HIS GLU SER MET LEU SEQRES 16 A 403 SER SER VAL LEU HIS ALA ARG THR LYS TRP LEU LYS GLU SEQRES 17 A 403 GLY GLY LEU LEU LEU PRO ALA SER ALA GLU LEU PHE VAL SEQRES 18 A 403 ALA PRO ILE SER ASP GLN MET LEU GLU TRP ARG LEU GLY SEQRES 19 A 403 PHE TRP SER GLN VAL LYS GLN HIS TYR GLY VAL ASP MET SEQRES 20 A 403 SER CYS MET GLU SER PHE ALA THR ARG CYS LEU MET GLY SEQRES 21 A 403 HIS SER GLU ILE VAL VAL GLN ASP LEU SER GLY GLU ASP SEQRES 22 A 403 VAL LEU ALA ARG PRO GLN ARG PHE ALA GLN LEU GLU LEU SEQRES 23 A 403 ALA ARG ALA GLY LEU GLU GLN GLU LEU GLU ALA GLY VAL SEQRES 24 A 403 GLY GLY ARG PHE ARG CYS SER CYS TYR GLY SER ALA PRO SEQRES 25 A 403 LEU HIS GLY PHE ALA VAL TRP PHE GLN VAL THR PHE PRO SEQRES 26 A 403 GLY GLY ASP SER GLU LYS PRO LEU VAL LEU SER THR SER SEQRES 27 A 403 PRO LEU HIS PRO ALA THR HIS TRP LYS GLN ALA LEU LEU SEQRES 28 A 403 TYR LEU ASN GLU PRO VAL PRO VAL GLU GLN ASP THR ASP SEQRES 29 A 403 ILE SER GLY GLU ILE THR LEU LEU PRO SER PRO ASP ASN SEQRES 30 A 403 PRO ARG ARG LEU ARG ILE LEU LEU ARG TYR LYS VAL GLY SEQRES 31 A 403 ASP HIS GLU GLU LYS THR LYS ASP PHE ALA MET GLU ASP HET 78K A 401 68 HETNAM 78K (2~{R})-4-[[(2~{R},3~{S},4~{R},5~{R})-5-(6-AMINOPURIN- HETNAM 2 78K 9-YL)-3,4-BIS(OXIDANYL)OXOLAN-2-YL]METHYL-[[4-AZANYL- HETNAM 3 78K 1-(METHOXYMETHYL)-2-OXIDANYLIDENE-PYRIMIDIN-5- HETNAM 4 78K YL]METHYL]AMINO]-2-AZANYL-BUTANOIC ACID FORMUL 2 78K C21 H30 N10 O7 FORMUL 3 HOH *331(H2 O) HELIX 1 AA1 VAL A 57 ALA A 65 1 9 HELIX 2 AA2 ASP A 66 LYS A 79 1 14 HELIX 3 AA3 ASN A 80 ARG A 85 1 6 HELIX 4 AA4 GLY A 97 ALA A 106 1 10 HELIX 5 AA5 ILE A 119 ASN A 130 1 12 HELIX 6 AA6 MET A 169 TRP A 180 1 12 HELIX 7 AA7 ASP A 201 PHE A 210 1 10 HELIX 8 AA8 GLN A 213 GLY A 219 1 7 HELIX 9 AA9 CYS A 224 GLY A 235 1 12 HELIX 10 AB1 SER A 245 VAL A 249 5 5 HELIX 11 AB2 GLY A 265 GLY A 273 1 9 SHEET 1 AA1 5 VAL A 136 PRO A 140 0 SHEET 2 AA1 5 ARG A 110 GLU A 115 1 N ALA A 113 O LEU A 139 SHEET 3 AA1 5 THR A 88 VAL A 92 1 N ASP A 91 O TYR A 112 SHEET 4 AA1 5 VAL A 152 SER A 157 1 O VAL A 156 N LEU A 90 SHEET 5 AA1 5 LEU A 181 LEU A 188 1 O LEU A 188 N ILE A 155 SHEET 1 AA2 9 GLN A 254 GLU A 260 0 SHEET 2 AA2 9 SER A 191 ILE A 199 -1 N ALA A 192 O LEU A 259 SHEET 3 AA2 9 ALA A 286 PHE A 299 -1 O HIS A 289 N ILE A 199 SHEET 4 AA2 9 GLN A 323 VAL A 334 -1 O LEU A 326 N PHE A 291 SHEET 5 AA2 9 GLU A 238 GLN A 242 -1 N VAL A 240 O LEU A 325 SHEET 6 AA2 9 LYS A 370 MET A 376 1 O ALA A 375 N ILE A 239 SHEET 7 AA2 9 LEU A 356 VAL A 364 -1 N TYR A 362 O LYS A 370 SHEET 8 AA2 9 ASP A 339 PRO A 348 -1 N SER A 341 O LYS A 363 SHEET 9 AA2 9 VAL A 274 SER A 281 -1 N VAL A 274 O LEU A 346 SHEET 1 AA3 4 GLN A 254 GLU A 260 0 SHEET 2 AA3 4 SER A 191 ILE A 199 -1 N ALA A 192 O LEU A 259 SHEET 3 AA3 4 ALA A 286 PHE A 299 -1 O HIS A 289 N ILE A 199 SHEET 4 AA3 4 LEU A 308 SER A 311 -1 O LEU A 308 N PHE A 299 CISPEP 1 LEU A 188 PRO A 189 0 -7.97 SITE 1 AC1 30 MET A 63 ARG A 69 GLY A 93 ALA A 94 SITE 2 AC1 30 GLY A 95 THR A 96 LEU A 99 GLU A 115 SITE 3 AC1 30 ALA A 116 SER A 117 GLY A 141 PRO A 142 SITE 4 AC1 30 VAL A 143 GLU A 144 GLU A 158 TRP A 159 SITE 5 AC1 30 MET A 160 GLY A 161 GLU A 167 MET A 169 SITE 6 AC1 30 SER A 172 HOH A 547 HOH A 558 HOH A 571 SITE 7 AC1 30 HOH A 575 HOH A 583 HOH A 597 HOH A 620 SITE 8 AC1 30 HOH A 666 HOH A 693 CRYST1 79.851 79.851 119.738 90.00 90.00 90.00 I 41 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012523 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012523 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008352 0.00000