HEADER VIRUS 13-SEP-16 5LVC TITLE AICHI VIRUS 1: EMPTY PARTICLE COMPND MOL_ID: 1; COMPND 2 MOLECULE: VP1; COMPND 3 CHAIN: a; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: VP0; COMPND 7 CHAIN: b; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: VP3; COMPND 11 CHAIN: c; COMPND 12 OTHER_DETAILS: VP3 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AICHI VIRUS; SOURCE 3 ORGANISM_COMMON: AIV; SOURCE 4 ORGANISM_TAXID: 72149; SOURCE 5 EXPRESSION_SYSTEM: CHLOROCEBUS SABAEUS; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 60711; SOURCE 7 EXPRESSION_SYSTEM_CELL_LINE: GMK; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: AICHI VIRUS; SOURCE 10 ORGANISM_COMMON: AIV; SOURCE 11 ORGANISM_TAXID: 72149; SOURCE 12 EXPRESSION_SYSTEM: CHLOROCEBUS SABAEUS; SOURCE 13 EXPRESSION_SYSTEM_TAXID: 60711; SOURCE 14 EXPRESSION_SYSTEM_CELL_LINE: GMK; SOURCE 15 MOL_ID: 3; SOURCE 16 ORGANISM_SCIENTIFIC: AICHI VIRUS; SOURCE 17 ORGANISM_COMMON: AIV; SOURCE 18 ORGANISM_TAXID: 72149 KEYWDS PICORNAVIRUS, PICORNAVIRIDAE, AICHI VIRUS 1, EMPTY PARTICLE, KEYWDS 2 KOBUVIRUS, 50 GENOME, RELEASE, HUMAN, PATHOGEN, VIRUS, RNA EXPDTA ELECTRON MICROSCOPY AUTHOR C.SABIN,T.FUZIK,K.SKUBNIK,L.PALKOVA,A.M.LINDBERG,P.PLEVKA REVDAT 3 15-MAY-24 5LVC 1 REMARK REVDAT 2 24-APR-19 5LVC 1 JRNL REVDAT 1 14-DEC-16 5LVC 0 JRNL AUTH C.SABIN,T.FUZIK,K.SKUBNIK,L.PALKOVA,A.M.LINDBERG,P.PLEVKA JRNL TITL STRUCTURE OF AICHI VIRUS 1 AND ITS EMPTY PARTICLE: CLUES TO JRNL TITL 2 KOBUVIRUS GENOME RELEASE MECHANISM. JRNL REF J.VIROL. V. 90 10800 2016 JRNL REFN ESSN 1098-5514 JRNL PMID 27681122 JRNL DOI 10.1128/JVI.01601-16 REMARK 2 REMARK 2 RESOLUTION. 4.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : NULL REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : NULL REMARK 3 REFINEMENT PROTOCOL : NULL REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 4.200 REMARK 3 NUMBER OF PARTICLES : 11606 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING ONLY REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 5LVC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 14-SEP-16. REMARK 100 THE DEPOSITION ID IS D_1200001400. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : AICHI REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : 3.00 REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 7.50 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TITAN KRIOS REMARK 245 DETECTOR TYPE : FEI FALCON II (4K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : NULL REMARK 245 MAXIMUM DEFOCUS (NM) : NULL REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : 2.70 REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 2000.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : NULL REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 THE ASSEMBLY REPRESENTED IN THIS ENTRY HAS REGULAR REMARK 300 ICOSAHEDRAL POINT SYMMETRY (SCHOENFLIES SYMBOL = I). REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 APPLY THE FOLLOWING TO CHAINS: a, b, c REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.500000 -0.809017 -0.309017 0.00000 REMARK 350 BIOMT2 2 0.809017 0.309017 0.500000 0.00000 REMARK 350 BIOMT3 2 -0.309017 -0.500000 0.809017 0.00000 REMARK 350 BIOMT1 3 -0.309017 -0.500000 -0.809017 0.00000 REMARK 350 BIOMT2 3 0.500000 -0.809017 0.309017 0.00000 REMARK 350 BIOMT3 3 -0.809017 -0.309017 0.500000 0.00000 REMARK 350 BIOMT1 4 -0.309017 0.500000 -0.809017 0.00000 REMARK 350 BIOMT2 4 -0.500000 -0.809017 -0.309017 0.00000 REMARK 350 BIOMT3 4 -0.809017 0.309017 0.500000 0.00000 REMARK 350 BIOMT1 5 0.500000 0.809017 -0.309017 0.00000 REMARK 350 BIOMT2 5 -0.809017 0.309017 -0.500000 0.00000 REMARK 350 BIOMT3 5 -0.309017 0.500000 0.809017 0.00000 REMARK 350 BIOMT1 6 -0.809017 -0.309017 -0.500000 0.00000 REMARK 350 BIOMT2 6 -0.309017 -0.500000 0.809017 0.00000 REMARK 350 BIOMT3 6 -0.500000 0.809017 0.309017 0.00000 REMARK 350 BIOMT1 7 -0.500000 0.809017 -0.309017 0.00000 REMARK 350 BIOMT2 7 -0.809017 -0.309017 0.500000 0.00000 REMARK 350 BIOMT3 7 0.309017 0.500000 0.809017 0.00000 REMARK 350 BIOMT1 8 0.500000 0.809017 0.309017 0.00000 REMARK 350 BIOMT2 8 -0.809017 0.309017 0.500000 0.00000 REMARK 350 BIOMT3 8 0.309017 -0.500000 0.809017 0.00000 REMARK 350 BIOMT1 9 0.809017 -0.309017 0.500000 0.00000 REMARK 350 BIOMT2 9 -0.309017 0.500000 0.809017 0.00000 REMARK 350 BIOMT3 9 -0.500000 -0.809017 0.309017 0.00000 REMARK 350 BIOMT1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 10 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT3 10 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT1 11 -0.500000 0.809017 -0.309017 0.00000 REMARK 350 BIOMT2 11 0.809017 0.309017 -0.500000 0.00000 REMARK 350 BIOMT3 11 -0.309017 -0.500000 -0.809017 0.00000 REMARK 350 BIOMT1 12 0.500000 0.809017 0.309017 0.00000 REMARK 350 BIOMT2 12 0.809017 -0.309017 -0.500000 0.00000 REMARK 350 BIOMT3 12 -0.309017 0.500000 -0.809017 0.00000 REMARK 350 BIOMT1 13 0.809017 -0.309017 0.500000 0.00000 REMARK 350 BIOMT2 13 0.309017 -0.500000 -0.809017 0.00000 REMARK 350 BIOMT3 13 0.500000 0.809017 -0.309017 0.00000 REMARK 350 BIOMT1 14 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 14 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT3 14 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT1 15 -0.809017 -0.309017 -0.500000 0.00000 REMARK 350 BIOMT2 15 0.309017 0.500000 -0.809017 0.00000 REMARK 350 BIOMT3 15 0.500000 -0.809017 -0.309017 0.00000 REMARK 350 BIOMT1 16 0.309017 -0.500000 0.809017 0.00000 REMARK 350 BIOMT2 16 -0.500000 -0.809017 -0.309017 0.00000 REMARK 350 BIOMT3 16 0.809017 -0.309017 -0.500000 0.00000 REMARK 350 BIOMT1 17 -0.500000 -0.809017 0.309017 0.00000 REMARK 350 BIOMT2 17 -0.809017 0.309017 -0.500000 0.00000 REMARK 350 BIOMT3 17 0.309017 -0.500000 -0.809017 0.00000 REMARK 350 BIOMT1 18 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 18 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 18 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 19 -0.500000 0.809017 0.309017 0.00000 REMARK 350 BIOMT2 19 0.809017 0.309017 0.500000 0.00000 REMARK 350 BIOMT3 19 0.309017 0.500000 -0.809017 0.00000 REMARK 350 BIOMT1 20 0.309017 0.500000 0.809017 0.00000 REMARK 350 BIOMT2 20 0.500000 -0.809017 0.309017 0.00000 REMARK 350 BIOMT3 20 0.809017 0.309017 -0.500000 0.00000 REMARK 350 BIOMT1 21 0.809017 -0.309017 -0.500000 0.00000 REMARK 350 BIOMT2 21 0.309017 -0.500000 0.809017 0.00000 REMARK 350 BIOMT3 21 -0.500000 -0.809017 -0.309017 0.00000 REMARK 350 BIOMT1 22 0.309017 -0.500000 -0.809017 0.00000 REMARK 350 BIOMT2 22 -0.500000 -0.809017 0.309017 0.00000 REMARK 350 BIOMT3 22 -0.809017 0.309017 -0.500000 0.00000 REMARK 350 BIOMT1 23 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT2 23 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 23 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT1 24 0.309017 0.500000 -0.809017 0.00000 REMARK 350 BIOMT2 24 -0.500000 0.809017 0.309017 0.00000 REMARK 350 BIOMT3 24 0.809017 0.309017 0.500000 0.00000 REMARK 350 BIOMT1 25 0.809017 0.309017 -0.500000 0.00000 REMARK 350 BIOMT2 25 0.309017 0.500000 0.809017 0.00000 REMARK 350 BIOMT3 25 0.500000 -0.809017 0.309017 0.00000 REMARK 350 BIOMT1 26 -0.309017 -0.500000 -0.809017 0.00000 REMARK 350 BIOMT2 26 -0.500000 0.809017 -0.309017 0.00000 REMARK 350 BIOMT3 26 0.809017 0.309017 -0.500000 0.00000 REMARK 350 BIOMT1 27 -0.309017 0.500000 -0.809017 0.00000 REMARK 350 BIOMT2 27 0.500000 0.809017 0.309017 0.00000 REMARK 350 BIOMT3 27 0.809017 -0.309017 -0.500000 0.00000 REMARK 350 BIOMT1 28 0.500000 0.809017 -0.309017 0.00000 REMARK 350 BIOMT2 28 0.809017 -0.309017 0.500000 0.00000 REMARK 350 BIOMT3 28 0.309017 -0.500000 -0.809017 0.00000 REMARK 350 BIOMT1 29 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 29 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 29 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 30 0.500000 -0.809017 -0.309017 0.00000 REMARK 350 BIOMT2 30 -0.809017 -0.309017 -0.500000 0.00000 REMARK 350 BIOMT3 30 0.309017 0.500000 -0.809017 0.00000 REMARK 350 BIOMT1 31 -0.500000 0.809017 0.309017 0.00000 REMARK 350 BIOMT2 31 -0.809017 -0.309017 -0.500000 0.00000 REMARK 350 BIOMT3 31 -0.309017 -0.500000 0.809017 0.00000 REMARK 350 BIOMT1 32 0.309017 0.500000 0.809017 0.00000 REMARK 350 BIOMT2 32 -0.500000 0.809017 -0.309017 0.00000 REMARK 350 BIOMT3 32 -0.809017 -0.309017 0.500000 0.00000 REMARK 350 BIOMT1 33 0.309017 -0.500000 0.809017 0.00000 REMARK 350 BIOMT2 33 0.500000 0.809017 0.309017 0.00000 REMARK 350 BIOMT3 33 -0.809017 0.309017 0.500000 0.00000 REMARK 350 BIOMT1 34 -0.500000 -0.809017 0.309017 0.00000 REMARK 350 BIOMT2 34 0.809017 -0.309017 0.500000 0.00000 REMARK 350 BIOMT3 34 -0.309017 0.500000 0.809017 0.00000 REMARK 350 BIOMT1 35 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 35 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 35 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 36 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT2 36 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 36 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT1 37 -0.309017 -0.500000 0.809017 0.00000 REMARK 350 BIOMT2 37 0.500000 -0.809017 -0.309017 0.00000 REMARK 350 BIOMT3 37 0.809017 0.309017 0.500000 0.00000 REMARK 350 BIOMT1 38 -0.809017 -0.309017 0.500000 0.00000 REMARK 350 BIOMT2 38 -0.309017 -0.500000 -0.809017 0.00000 REMARK 350 BIOMT3 38 0.500000 -0.809017 0.309017 0.00000 REMARK 350 BIOMT1 39 -0.809017 0.309017 0.500000 0.00000 REMARK 350 BIOMT2 39 -0.309017 0.500000 -0.809017 0.00000 REMARK 350 BIOMT3 39 -0.500000 -0.809017 -0.309017 0.00000 REMARK 350 BIOMT1 40 -0.309017 0.500000 0.809017 0.00000 REMARK 350 BIOMT2 40 0.500000 0.809017 -0.309017 0.00000 REMARK 350 BIOMT3 40 -0.809017 0.309017 -0.500000 0.00000 REMARK 350 BIOMT1 41 0.809017 0.309017 -0.500000 0.00000 REMARK 350 BIOMT2 41 -0.309017 -0.500000 -0.809017 0.00000 REMARK 350 BIOMT3 41 -0.500000 0.809017 -0.309017 0.00000 REMARK 350 BIOMT1 42 0.809017 -0.309017 -0.500000 0.00000 REMARK 350 BIOMT2 42 -0.309017 0.500000 -0.809017 0.00000 REMARK 350 BIOMT3 42 0.500000 0.809017 0.309017 0.00000 REMARK 350 BIOMT1 43 0.309017 -0.500000 -0.809017 0.00000 REMARK 350 BIOMT2 43 0.500000 0.809017 -0.309017 0.00000 REMARK 350 BIOMT3 43 0.809017 -0.309017 0.500000 0.00000 REMARK 350 BIOMT1 44 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT2 44 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 44 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT1 45 0.309017 0.500000 -0.809017 0.00000 REMARK 350 BIOMT2 45 0.500000 -0.809017 -0.309017 0.00000 REMARK 350 BIOMT3 45 -0.809017 -0.309017 -0.500000 0.00000 REMARK 350 BIOMT1 46 -0.500000 -0.809017 -0.309017 0.00000 REMARK 350 BIOMT2 46 0.809017 -0.309017 -0.500000 0.00000 REMARK 350 BIOMT3 46 0.309017 -0.500000 0.809017 0.00000 REMARK 350 BIOMT1 47 -0.809017 0.309017 -0.500000 0.00000 REMARK 350 BIOMT2 47 0.309017 -0.500000 -0.809017 0.00000 REMARK 350 BIOMT3 47 -0.500000 -0.809017 0.309017 0.00000 REMARK 350 BIOMT1 48 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 48 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT3 48 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT1 49 0.809017 0.309017 0.500000 0.00000 REMARK 350 BIOMT2 49 0.309017 0.500000 -0.809017 0.00000 REMARK 350 BIOMT3 49 -0.500000 0.809017 0.309017 0.00000 REMARK 350 BIOMT1 50 0.500000 -0.809017 0.309017 0.00000 REMARK 350 BIOMT2 50 0.809017 0.309017 -0.500000 0.00000 REMARK 350 BIOMT3 50 0.309017 0.500000 0.809017 0.00000 REMARK 350 BIOMT1 51 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 51 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT3 51 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT1 52 0.809017 0.309017 0.500000 0.00000 REMARK 350 BIOMT2 52 -0.309017 -0.500000 0.809017 0.00000 REMARK 350 BIOMT3 52 0.500000 -0.809017 -0.309017 0.00000 REMARK 350 BIOMT1 53 0.500000 -0.809017 0.309017 0.00000 REMARK 350 BIOMT2 53 -0.809017 -0.309017 0.500000 0.00000 REMARK 350 BIOMT3 53 -0.309017 -0.500000 -0.809017 0.00000 REMARK 350 BIOMT1 54 -0.500000 -0.809017 -0.309017 0.00000 REMARK 350 BIOMT2 54 -0.809017 0.309017 0.500000 0.00000 REMARK 350 BIOMT3 54 -0.309017 0.500000 -0.809017 0.00000 REMARK 350 BIOMT1 55 -0.809017 0.309017 -0.500000 0.00000 REMARK 350 BIOMT2 55 -0.309017 0.500000 0.809017 0.00000 REMARK 350 BIOMT3 55 0.500000 0.809017 -0.309017 0.00000 REMARK 350 BIOMT1 56 -0.309017 -0.500000 0.809017 0.00000 REMARK 350 BIOMT2 56 -0.500000 0.809017 0.309017 0.00000 REMARK 350 BIOMT3 56 -0.809017 -0.309017 -0.500000 0.00000 REMARK 350 BIOMT1 57 -0.809017 -0.309017 0.500000 0.00000 REMARK 350 BIOMT2 57 0.309017 0.500000 0.809017 0.00000 REMARK 350 BIOMT3 57 -0.500000 0.809017 -0.309017 0.00000 REMARK 350 BIOMT1 58 -0.809017 0.309017 0.500000 0.00000 REMARK 350 BIOMT2 58 0.309017 -0.500000 0.809017 0.00000 REMARK 350 BIOMT3 58 0.500000 0.809017 0.309017 0.00000 REMARK 350 BIOMT1 59 -0.309017 0.500000 0.809017 0.00000 REMARK 350 BIOMT2 59 -0.500000 -0.809017 0.309017 0.00000 REMARK 350 BIOMT3 59 0.809017 -0.309017 0.500000 0.00000 REMARK 350 BIOMT1 60 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT2 60 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 60 0.000000 -1.000000 0.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR a 1 REMARK 465 LEU a 2 REMARK 465 THR a 3 REMARK 465 GLU a 4 REMARK 465 ASP a 5 REMARK 465 LEU a 6 REMARK 465 ASP a 7 REMARK 465 ALA a 8 REMARK 465 PRO a 9 REMARK 465 GLN a 10 REMARK 465 ASP a 11 REMARK 465 THR a 12 REMARK 465 GLY a 13 REMARK 465 ASN a 14 REMARK 465 ILE a 15 REMARK 465 GLU a 16 REMARK 465 ASN a 17 REMARK 465 GLY a 18 REMARK 465 ALA a 19 REMARK 465 ALA a 20 REMARK 465 ASP a 21 REMARK 465 ASN a 22 REMARK 465 SER a 23 REMARK 465 PRO a 24 REMARK 465 GLN a 25 REMARK 465 PRO a 26 REMARK 465 ARG a 27 REMARK 465 THR a 28 REMARK 465 THR a 29 REMARK 465 PHE a 30 REMARK 465 PRO a 236 REMARK 465 LEU a 237 REMARK 465 PRO a 238 REMARK 465 THR a 239 REMARK 465 PRO a 240 REMARK 465 ALA a 241 REMARK 465 ALA a 242 REMARK 465 ASN a 243 REMARK 465 ALA a 244 REMARK 465 GLU a 245 REMARK 465 ARG a 246 REMARK 465 THR a 247 REMARK 465 VAL a 248 REMARK 465 ALA a 249 REMARK 465 VAL a 250 REMARK 465 ILE a 251 REMARK 465 LYS a 252 REMARK 465 GLN a 253 REMARK 465 GLY b 1 REMARK 465 ASN b 2 REMARK 465 SER b 3 REMARK 465 VAL b 4 REMARK 465 THR b 5 REMARK 465 ASN b 6 REMARK 465 ILE b 7 REMARK 465 TYR b 8 REMARK 465 GLY b 9 REMARK 465 ASN b 10 REMARK 465 GLY b 11 REMARK 465 SER b 61 REMARK 465 SER b 62 REMARK 465 ASN b 63 REMARK 465 LYS b 64 REMARK 465 VAL b 65 REMARK 465 GLY b 66 REMARK 465 ALA b 76 REMARK 465 ALA b 77 REMARK 465 ALA b 78 REMARK 465 ARG b 79 REMARK 465 ALA b 80 REMARK 465 SER b 81 REMARK 465 GLU b 82 REMARK 465 SER b 83 REMARK 465 ALA b 84 REMARK 465 THR b 85 REMARK 465 ASP b 86 REMARK 465 SER b 87 REMARK 465 ALA b 88 REMARK 465 ILE b 89 REMARK 465 GLU b 90 REMARK 465 GLY b 91 REMARK 465 ILE b 92 REMARK 465 ASP b 93 REMARK 465 ALA b 94 REMARK 465 ALA b 95 REMARK 465 GLY b 96 REMARK 465 LYS b 97 REMARK 465 ALA b 98 REMARK 465 ALA b 99 REMARK 465 SER b 100 REMARK 465 LYS b 101 REMARK 465 ALA b 102 REMARK 465 ILE b 103 REMARK 465 THR b 104 REMARK 465 ARG b 105 REMARK 465 LYS b 106 REMARK 465 LEU b 107 REMARK 465 ASP b 108 REMARK 465 ARG b 109 REMARK 465 PRO b 110 REMARK 465 ALA b 111 REMARK 465 ALA b 112 REMARK 465 PRO b 113 REMARK 465 SER b 114 REMARK 465 SER b 115 REMARK 465 THR b 116 REMARK 465 ALA b 117 REMARK 465 ASN b 118 REMARK 465 PRO b 119 REMARK 465 GLN b 120 REMARK 465 PRO b 121 REMARK 465 SER b 122 REMARK 465 LEU b 123 REMARK 465 ILE b 124 REMARK 465 ALA b 125 REMARK 465 LEU b 126 REMARK 465 ASN b 127 REMARK 465 PRO b 128 REMARK 465 SER b 129 REMARK 465 ALA b 130 REMARK 465 THR b 131 REMARK 465 GLN b 132 REMARK 465 SER b 133 REMARK 465 GLY b 134 REMARK 465 ASN b 135 REMARK 465 ALA b 136 REMARK 465 SER b 137 REMARK 465 ILE b 138 REMARK 465 LEU b 139 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO b 145 C - N - CD ANGL. DEV. = 12.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR a 32 -70.05 -127.95 REMARK 500 THR a 33 76.04 39.55 REMARK 500 ASN a 35 76.18 32.03 REMARK 500 LEU a 37 110.40 -1.39 REMARK 500 PRO a 39 -137.41 -74.34 REMARK 500 ASP a 40 -12.61 62.79 REMARK 500 LEU a 75 47.59 -97.69 REMARK 500 LEU a 81 52.68 -108.85 REMARK 500 ASP a 85 -151.12 -94.81 REMARK 500 VAL a 86 -72.95 -120.33 REMARK 500 VAL a 227 87.07 60.48 REMARK 500 ASN b 13 78.34 61.75 REMARK 500 VAL b 14 172.65 -46.18 REMARK 500 THR b 16 -152.59 -88.19 REMARK 500 ALA b 20 -62.35 74.57 REMARK 500 ASN b 21 -153.35 44.36 REMARK 500 TRP b 23 135.37 71.19 REMARK 500 ALA b 24 -71.05 -81.45 REMARK 500 PRO b 25 56.65 -106.77 REMARK 500 THR b 26 -69.08 -97.56 REMARK 500 SER b 28 71.89 -162.23 REMARK 500 SER b 52 -50.62 69.04 REMARK 500 GLU b 53 65.09 -103.71 REMARK 500 LYS b 54 -70.39 -76.76 REMARK 500 THR b 55 65.84 29.82 REMARK 500 ARG b 68 37.71 -97.24 REMARK 500 THR b 143 55.23 -95.55 REMARK 500 ALA b 144 -93.75 -64.61 REMARK 500 PRO b 145 -161.27 -100.76 REMARK 500 THR b 223 -35.15 -131.27 REMARK 500 ASN b 251 113.30 -162.41 REMARK 500 GLU b 303 -36.43 -130.26 REMARK 500 SER b 315 157.59 171.51 REMARK 500 ASP b 358 83.15 62.41 REMARK 500 PRO c 76 -9.54 -57.46 REMARK 500 THR c 107 30.35 -99.33 REMARK 500 PRO c 122 -179.46 -61.50 REMARK 500 ALA c 146 -99.06 -149.90 REMARK 500 VAL c 165 75.74 -103.19 REMARK 500 SER c 175 -57.07 -133.65 REMARK 500 LEU c 214 90.91 61.82 REMARK 500 PRO c 218 -158.34 -72.14 REMARK 500 ALA c 219 -52.48 58.87 REMARK 500 LEU c 220 150.80 68.76 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-4112 RELATED DB: EMDB REMARK 900 ARCHI VIRUS 1: EMPTY PARTICLE DBREF 5LVC a 1 253 UNP Q91QP4 Q91QP4_AIV 764 1016 DBREF 5LVC b 1 370 UNP Q91QP4 Q91QP4_AIV 171 540 DBREF 5LVC c 1 223 UNP O91464 O91464_AIV 542 764 SEQRES 1 a 253 THR LEU THR GLU ASP LEU ASP ALA PRO GLN ASP THR GLY SEQRES 2 a 253 ASN ILE GLU ASN GLY ALA ALA ASP ASN SER PRO GLN PRO SEQRES 3 a 253 ARG THR THR PHE ASP TYR THR GLY ASN PRO LEU PRO PRO SEQRES 4 a 253 ASP THR LYS LEU GLU ASN PHE PHE SER PHE TYR ARG LEU SEQRES 5 a 253 LEU PRO MET GLY GLY SER GLY ALA PRO SER LEU SER PHE SEQRES 6 a 253 PRO ALA ASP GLU GLY THR ILE ILE PRO LEU ASN PRO ILE SEQRES 7 a 253 ASN TRP LEU LYS GLY ALA ASP VAL SER GLY ILE ALA ALA SEQRES 8 a 253 MET LEU SER CYS PHE THR TYR ILE ALA ALA ASP LEU ARG SEQRES 9 a 253 ILE THR LEU ARG PHE SER ASN PRO ASN ASP ASN PRO ALA SEQRES 10 a 253 THR MET LEU VAL ALA PHE ALA PRO PRO GLY ALA THR ILE SEQRES 11 a 253 PRO LEU LYS PRO THR ARG GLN MET LEU SER ASN PHE TYR SEQRES 12 a 253 MET ALA GLU VAL PRO VAL SER ALA ALA THR SER THR MET SEQRES 13 a 253 VAL SER PHE SER ILE PRO TYR THR SER PRO LEU SER ALA SEQRES 14 a 253 ILE PRO THR SER TYR PHE GLY TRP GLU ASP TRP SER GLY SEQRES 15 a 253 THR ASN PHE GLY GLN LEU SER SER GLY SER TRP GLY ASN SEQRES 16 a 253 LEU MET LEU ILE PRO SER LEU SER VAL ASP SER ALA ILE SEQRES 17 a 253 PRO PHE ASP PHE GLN LEU SER CYS TRP VAL ALA PHE GLY SEQRES 18 a 253 ASN PHE LYS ALA TRP VAL PRO ARG PRO PRO PRO PRO LEU SEQRES 19 a 253 PRO PRO LEU PRO THR PRO ALA ALA ASN ALA GLU ARG THR SEQRES 20 a 253 VAL ALA VAL ILE LYS GLN SEQRES 1 b 370 GLY ASN SER VAL THR ASN ILE TYR GLY ASN GLY ASN ASN SEQRES 2 b 370 VAL THR THR ASP VAL GLY ALA ASN GLY TRP ALA PRO THR SEQRES 3 b 370 VAL SER THR GLY LEU GLY ASP GLY PRO VAL SER ALA SER SEQRES 4 b 370 ALA ASP SER LEU PRO GLY ARG SER GLY GLY ALA SER SER SEQRES 5 b 370 GLU LYS THR HIS THR VAL SER GLY SER SER ASN LYS VAL SEQRES 6 b 370 GLY SER ARG PHE SER LYS TRP TRP GLU PRO ALA ALA ALA SEQRES 7 b 370 ARG ALA SER GLU SER ALA THR ASP SER ALA ILE GLU GLY SEQRES 8 b 370 ILE ASP ALA ALA GLY LYS ALA ALA SER LYS ALA ILE THR SEQRES 9 b 370 ARG LYS LEU ASP ARG PRO ALA ALA PRO SER SER THR ALA SEQRES 10 b 370 ASN PRO GLN PRO SER LEU ILE ALA LEU ASN PRO SER ALA SEQRES 11 b 370 THR GLN SER GLY ASN ALA SER ILE LEU THR GLY SER THR SEQRES 12 b 370 ALA PRO SER LEU LEU ALA TYR PRO THR ALA THR PRO VAL SEQRES 13 b 370 PRO LEU PRO ASN PRO ASP GLU PRO SER GLN PRO GLY PRO SEQRES 14 b 370 SER GLY ASP ARG THR TRP LEU LEU ASP THR VAL THR TRP SEQRES 15 b 370 SER GLN GLU PHE THR ARG GLY TRP ASN ILE ALA GLY SER SEQRES 16 b 370 ASN GLY MET GLN TRP THR GLY LEU GLU SER LEU ILE PHE SEQRES 17 b 370 PRO VAL SER THR ASP THR ASN TRP THR SER THR SER SER SEQRES 18 b 370 PRO THR ALA TYR PRO LEU PRO PHE SER PHE VAL ARG ALA SEQRES 19 b 370 TYR PRO ASP SER SER TRP ALA ALA MET TYR ASN THR HIS SEQRES 20 b 370 SER MET TRP ASN CYS GLY TRP ARG VAL GLN VAL THR VAL SEQRES 21 b 370 ASN GLY SER GLN PHE HIS ALA GLY ALA LEU ILE LEU TYR SEQRES 22 b 370 MET VAL PRO GLU ALA THR THR HIS ALA ILE GLN THR ALA SEQRES 23 b 370 ARG ASP ASN ALA GLY PHE VAL PHE PRO TYR VAL ILE LEU SEQRES 24 b 370 ASN LEU TYR GLU SER ASN THR ALA THR ILE GLU VAL PRO SEQRES 25 b 370 TYR ILE SER PRO THR PRO ASN THR SER SER GLY LEU HIS SEQRES 26 b 370 ALA PRO TRP THR PHE TYR LEU GLN VAL LEU SER PRO LEU SEQRES 27 b 370 ASN PRO PRO PRO SER LEU PRO THR SER LEU SER CYS SER SEQRES 28 b 370 ILE TYR VAL THR PRO VAL ASP SER SER PHE HIS GLY LEU SEQRES 29 b 370 ARG TYR LEU ALA PRO GLN SEQRES 1 c 223 HIS TRP LYS THR ARG ALA VAL PRO GLY ALA GLY THR PHE SEQRES 2 c 223 GLY SER ALA VAL ALA GLY GLN GLU LEU PRO LEU CYS GLY SEQRES 3 c 223 VAL ARG ALA TYR TYR PRO PRO ASN ALA TYR ILE PRO ALA SEQRES 4 c 223 GLN VAL ARG ASP TRP LEU GLU PHE ALA HIS ARG PRO GLY SEQRES 5 c 223 LEU MET ALA THR VAL PRO TRP THR MET ALA ASP GLU PRO SEQRES 6 c 223 ALA GLU ARG LEU GLY ILE PHE PRO VAL SER PRO SER ALA SEQRES 7 c 223 ILE ALA GLY THR GLY ALA PRO ILE SER TYR VAL ILE SER SEQRES 8 c 223 LEU PHE SER GLN TRP ARG GLY GLU LEU ALA ALA HIS LEU SEQRES 9 c 223 LEU PHE THR GLY SER ALA GLN HIS TYR GLY ARG LEU VAL SEQRES 10 c 223 VAL CYS TYR THR PRO ALA ALA PRO GLN PRO PRO SER THR SEQRES 11 c 223 MET GLN GLU ALA MET ARG GLY THR TYR THR VAL TRP ASP SEQRES 12 c 223 VAL ASN ALA ALA SER THR LEU GLU PHE THR ILE PRO PHE SEQRES 13 c 223 ILE SER ASN SER TYR TRP LYS THR VAL ASP VAL ASN ASN SEQRES 14 c 223 PRO ASP ALA LEU LEU SER THR THR GLY TYR VAL SER ILE SEQRES 15 c 223 TRP VAL GLN ASN PRO LEU VAL GLY PRO HIS THR ALA PRO SEQRES 16 c 223 ALA SER ALA LEU VAL GLN ALA PHE ILE SER ALA GLY GLU SEQRES 17 c 223 SER PHE ASN VAL ARG LEU MET GLN ASN PRO ALA LEU THR SEQRES 18 c 223 SER GLN HELIX 1 AA1 LYS a 42 PHE a 47 1 6 HELIX 2 AA2 ASN a 76 LEU a 81 1 6 HELIX 3 AA3 GLY a 88 SER a 94 1 7 HELIX 4 AA4 THR a 135 SER a 140 1 6 HELIX 5 AA5 PRO b 167 GLY b 171 5 5 HELIX 6 AA6 THR b 212 THR b 217 1 6 HELIX 7 AA7 PRO b 228 TYR b 235 1 8 HELIX 8 AA8 SER b 238 ASN b 245 1 8 HELIX 9 AA9 THR b 279 ASP b 288 1 10 HELIX 10 AB1 ASN b 289 PHE b 294 5 6 HELIX 11 AB2 TRP c 44 ARG c 50 1 7 HELIX 12 AB3 ALA c 84 LEU c 92 1 9 HELIX 13 AB4 THR c 130 MET c 135 1 6 SHEET 1 A 4 LEU a 63 PRO a 66 0 SHEET 2 A 4 ASP a 211 GLY a 221 -1 N LEU a 214 O LEU a 63 SHEET 3 A 4 ASP a 102 SER a 110 -1 N SER a 110 O GLN a 213 SHEET 4 A 4 SER a 154 ILE a 161 -1 N ILE a 161 O LEU a 103 SHEET 1 B 4 THR a 71 PRO a 74 0 SHEET 2 B 4 ASN a 195 SER a 201 -1 N LEU a 198 O THR a 71 SHEET 3 B 4 ALA a 117 ALA a 124 -1 N ALA a 124 O ASN a 195 SHEET 4 B 4 TYR a 143 VAL a 149 -1 N VAL a 149 O ALA a 117 SHEET 1 C 2 TYR a 98 ALA a 100 0 SHEET 2 C 2 LYS a 224 TRP a 226 -1 N TRP a 226 O TYR a 98 SHEET 1 D 4 TYR b 225 LEU b 227 0 SHEET 2 D 4 TRP b 328 SER b 336 -1 N PHE b 330 O TYR b 225 SHEET 3 D 4 ALA b 269 PRO b 276 -1 N VAL b 275 O THR b 329 SHEET 4 D 4 PRO b 295 ASN b 300 -1 N LEU b 299 O LEU b 270 SHEET 1 E 2 MET b 249 ASN b 251 0 SHEET 2 E 2 SER b 360 HIS b 362 -1 N HIS b 362 O MET b 249 SHEET 1 F 4 THR b 306 VAL b 311 0 SHEET 2 F 4 GLY b 253 THR b 259 -1 N VAL b 258 O ALA b 307 SHEET 3 F 4 SER b 347 VAL b 357 -1 N VAL b 357 O GLY b 253 SHEET 4 F 4 THR b 174 SER b 183 -1 N TRP b 182 O LEU b 348 SHEET 1 G 2 GLN c 95 ARG c 97 0 SHEET 2 G 2 ASN c 211 ARG c 213 -1 N ARG c 213 O GLN c 95 SHEET 1 H 4 THR c 149 ILE c 154 0 SHEET 2 H 4 LEU c 100 PHE c 106 -1 N LEU c 104 O LEU c 150 SHEET 3 H 4 VAL c 200 ALA c 206 -1 N SER c 205 O ALA c 101 SHEET 4 H 4 LEU c 53 VAL c 57 -1 N VAL c 57 O VAL c 200 SHEET 1 I 4 THR c 138 ASP c 143 0 SHEET 2 I 4 ARG c 115 PRO c 122 -1 N TYR c 120 O THR c 138 SHEET 3 I 4 GLY c 178 ASN c 186 -1 N ASN c 186 O ARG c 115 SHEET 4 I 4 ARG c 68 PRO c 73 -1 N PHE c 72 O VAL c 180 CISPEP 1 THR a 33 GLY a 34 0 3.95 CISPEP 2 GLY a 34 ASN a 35 0 12.36 CISPEP 3 LYS a 82 GLY a 83 0 2.92 CISPEP 4 ASN b 12 ASN b 13 0 -0.02 CISPEP 5 GLY b 19 ALA b 20 0 8.61 CISPEP 6 TRP b 23 ALA b 24 0 8.08 CISPEP 7 THR b 140 GLY b 141 0 0.32 CISPEP 8 SER b 142 THR b 143 0 5.47 CISPEP 9 PHE b 208 PRO b 209 0 -0.25 CISPEP 10 LEU b 227 PRO b 228 0 1.00 CISPEP 11 SER c 222 GLN c 223 0 -0.04 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000