HEADER CELL ADHESION 14-SEP-16 5LVY TITLE STRUCTURAL STUDIES OF THE AGGREGATIVE ADHERENCE FIMBRIAE OF TITLE 2 ENTEROAGGREGATIVE ESCHERICHIA COLI COMPND MOL_ID: 1; COMPND 2 MOLECULE: ADHESIN PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI O111:H21; SOURCE 3 ORGANISM_TAXID: 660582; SOURCE 4 GENE: AAF5A; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI-PICHIA PASTORIS SHUTTLE VECTOR SOURCE 6 PPPARG4; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 1182032 KEYWDS AGGREGATIVE ADHERENCE FIMBRIAE, DONOR STRAND COMPLEMENTATION, EAEC, KEYWDS 2 E. COLI, FIBRONECTIN, CELL ADHESION EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR B.LIU,S.MATTHEWS REVDAT 2 02-AUG-17 5LVY 1 REVDAT 1 26-JUL-17 5LVY 0 JRNL AUTH R.JNSSON,B.LIU,C.STRUVE,Y.YANG,R.JRGENSEN,Y.XU,H.JENSSEN, JRNL AUTH 2 K.A.KROGFELT,S.MATTHEWS JRNL TITL STRUCTURAL AND FUNCTIONAL STUDIES OF ESCHERICHIA COLI JRNL TITL 2 AGGREGATIVE ADHERENCE FIMBRIAE (AAF/V) REVEAL A DEFICIENCY JRNL TITL 3 IN EXTRACELLULAR MATRIX BINDING. JRNL REF BIOCHIM. BIOPHYS. ACTA V.1865 304 2017 JRNL REFN ISSN 0006-3002 JRNL PMID 27939608 JRNL DOI 10.1016/J.BBAPAP.2016.11.017 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : ARIA REMARK 3 AUTHORS : LINGE, O'DONOGHUE AND NILGES REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5LVY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 15-SEP-16. REMARK 100 THE DEPOSITION ID IS D_1200001449. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 5.0 REMARK 210 IONIC STRENGTH : 100 REMARK 210 PRESSURE : 1 BAR REMARK 210 SAMPLE CONTENTS : 50 MM U SODIUM ACETATE, 50 NM U REMARK 210 SODIUM CHLORIDE, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D HNCO; 3D REMARK 210 HN(CO)CA; 3D HNCACB; 3D CBCA(CO) REMARK 210 NH; 3D HCCH-TOCSY; 3D 1H-15N REMARK 210 NOESY; 3D 1H-13C NOESY; 3D REMARK 210 HBHA(CO)NH; 3D H(CCO)NH REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : DRX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRVIEW REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 10 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : ALL CALCULATED STRUCTURES REMARK 210 SUBMITTED REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 7720 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 1 TYR A 53 CE1 TYR A 53 CZ 0.097 REMARK 500 1 TYR A 53 CZ TYR A 53 CE2 -0.103 REMARK 500 2 TYR A 53 CE1 TYR A 53 CZ 0.094 REMARK 500 2 TYR A 53 CZ TYR A 53 CE2 -0.103 REMARK 500 2 TYR A 79 CZ TYR A 79 CE2 0.080 REMARK 500 4 TYR A 53 CE1 TYR A 53 CZ 0.093 REMARK 500 4 TYR A 53 CZ TYR A 53 CE2 -0.104 REMARK 500 5 TYR A 79 CE1 TYR A 79 CZ -0.111 REMARK 500 5 TYR A 79 CZ TYR A 79 CE2 0.102 REMARK 500 6 TYR A 53 CE1 TYR A 53 CZ 0.094 REMARK 500 6 TYR A 53 CZ TYR A 53 CE2 -0.104 REMARK 500 7 TYR A 53 CE1 TYR A 53 CZ 0.082 REMARK 500 7 TYR A 53 CZ TYR A 53 CE2 -0.091 REMARK 500 8 TYR A 53 CE1 TYR A 53 CZ 0.086 REMARK 500 8 TYR A 53 CZ TYR A 53 CE2 -0.095 REMARK 500 8 TYR A 79 CE1 TYR A 79 CZ -0.081 REMARK 500 9 TYR A 23 CE1 TYR A 23 CZ 0.103 REMARK 500 9 TYR A 23 CZ TYR A 23 CE2 -0.110 REMARK 500 9 TYR A 79 CE1 TYR A 79 CZ -0.118 REMARK 500 9 TYR A 79 CZ TYR A 79 CE2 0.110 REMARK 500 10 TYR A 53 CE1 TYR A 53 CZ 0.087 REMARK 500 10 TYR A 53 CZ TYR A 53 CE2 -0.097 REMARK 500 10 TYR A 79 CE1 TYR A 79 CZ -0.089 REMARK 500 10 TYR A 79 CZ TYR A 79 CE2 0.082 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASP A 19 168.63 68.02 REMARK 500 1 ILE A 25 78.24 -108.91 REMARK 500 1 ASP A 28 -45.08 75.02 REMARK 500 1 ASP A 31 146.46 63.57 REMARK 500 1 ASP A 42 94.60 63.27 REMARK 500 1 LYS A 63 -63.80 -133.48 REMARK 500 1 GLN A 85 -89.15 65.41 REMARK 500 1 GLN A 86 14.36 -153.45 REMARK 500 1 SER A 110 92.19 -62.51 REMARK 500 1 VAL A 113 -66.07 -108.03 REMARK 500 1 THR A 125 -120.99 -97.57 REMARK 500 1 ASP A 132 127.57 70.26 REMARK 500 1 ASN A 133 79.04 62.87 REMARK 500 1 LYS A 134 -57.21 -171.01 REMARK 500 1 ALA A 136 -63.97 -167.19 REMARK 500 2 ASP A 19 148.23 70.79 REMARK 500 2 THR A 27 -33.16 -140.30 REMARK 500 2 ASP A 28 -62.28 176.68 REMARK 500 2 ASP A 31 159.32 55.56 REMARK 500 2 ASP A 42 96.27 65.07 REMARK 500 2 LYS A 63 -63.52 -129.43 REMARK 500 2 GLN A 85 41.99 -81.30 REMARK 500 2 TYR A 91 -11.47 72.15 REMARK 500 2 SER A 110 91.31 -66.79 REMARK 500 2 THR A 125 -119.49 -93.51 REMARK 500 2 ASP A 132 132.35 70.01 REMARK 500 2 ASN A 133 74.44 62.76 REMARK 500 2 LYS A 134 -54.85 -164.66 REMARK 500 2 GLN A 135 75.35 51.07 REMARK 500 2 ALA A 136 -70.48 -174.04 REMARK 500 2 ASN A 137 127.90 -171.85 REMARK 500 3 PRO A 18 -159.25 -85.38 REMARK 500 3 ILE A 25 79.20 -111.21 REMARK 500 3 ASP A 28 -48.53 77.20 REMARK 500 3 ASP A 31 160.03 67.34 REMARK 500 3 ASP A 42 89.17 64.76 REMARK 500 3 LYS A 63 -64.06 -106.12 REMARK 500 3 VAL A 83 -37.67 57.49 REMARK 500 3 GLN A 84 33.50 -80.09 REMARK 500 3 TYR A 91 -3.25 73.94 REMARK 500 3 VAL A 113 -64.83 -130.27 REMARK 500 3 THR A 125 -126.42 -97.68 REMARK 500 3 ASP A 132 129.17 67.70 REMARK 500 3 ASN A 133 80.26 64.51 REMARK 500 3 LYS A 134 -54.14 -172.86 REMARK 500 3 ALA A 136 -71.18 -166.62 REMARK 500 3 SER A 145 35.87 -96.57 REMARK 500 4 ASP A 28 -6.78 73.57 REMARK 500 4 ASP A 31 140.70 64.17 REMARK 500 4 ASP A 42 102.02 68.30 REMARK 500 REMARK 500 THIS ENTRY HAS 156 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 34042 RELATED DB: BMRB REMARK 900 STRUCTURAL STUDIES OF THE AGGREGATIVE ADHERENCE FIMBRIAE OF REMARK 900 ENTEROAGGREGATIVE ESCHERICHIA COLI DBREF 5LVY A 9 131 UNP C9K5V2 C9K5V2_ECOLX 49 171 SEQADV 5LVY VAL A 113 UNP C9K5V2 ALA 153 CONFLICT SEQADV 5LVY ASP A 132 UNP C9K5V2 EXPRESSION TAG SEQADV 5LVY ASN A 133 UNP C9K5V2 EXPRESSION TAG SEQADV 5LVY LYS A 134 UNP C9K5V2 EXPRESSION TAG SEQADV 5LVY GLN A 135 UNP C9K5V2 EXPRESSION TAG SEQADV 5LVY ALA A 136 UNP C9K5V2 EXPRESSION TAG SEQADV 5LVY ASN A 137 UNP C9K5V2 EXPRESSION TAG SEQADV 5LVY PRO A 138 UNP C9K5V2 EXPRESSION TAG SEQADV 5LVY THR A 139 UNP C9K5V2 EXPRESSION TAG SEQADV 5LVY PRO A 140 UNP C9K5V2 EXPRESSION TAG SEQADV 5LVY SER A 141 UNP C9K5V2 EXPRESSION TAG SEQADV 5LVY SER A 142 UNP C9K5V2 EXPRESSION TAG SEQADV 5LVY LEU A 143 UNP C9K5V2 EXPRESSION TAG SEQADV 5LVY THR A 144 UNP C9K5V2 EXPRESSION TAG SEQADV 5LVY SER A 145 UNP C9K5V2 EXPRESSION TAG SEQADV 5LVY LYS A 146 UNP C9K5V2 EXPRESSION TAG SEQADV 5LVY ALA A 147 UNP C9K5V2 EXPRESSION TAG SEQADV 5LVY ALA A 148 UNP C9K5V2 EXPRESSION TAG SEQADV 5LVY GLY A 149 UNP C9K5V2 EXPRESSION TAG SEQADV 5LVY LYS A 150 UNP C9K5V2 EXPRESSION TAG SEQADV 5LVY ASN A 151 UNP C9K5V2 EXPRESSION TAG SEQADV 5LVY ILE A 152 UNP C9K5V2 EXPRESSION TAG SEQADV 5LVY VAL A 153 UNP C9K5V2 EXPRESSION TAG SEQADV 5LVY SER A 154 UNP C9K5V2 EXPRESSION TAG SEQADV 5LVY SER A 155 UNP C9K5V2 EXPRESSION TAG SEQADV 5LVY THR A 156 UNP C9K5V2 EXPRESSION TAG SEQADV 5LVY GLY A 157 UNP C9K5V2 EXPRESSION TAG SEQADV 5LVY THR A 158 UNP C9K5V2 EXPRESSION TAG SEQADV 5LVY ILE A 159 UNP C9K5V2 EXPRESSION TAG SEQADV 5LVY THR A 160 UNP C9K5V2 EXPRESSION TAG SEQADV 5LVY ILE A 161 UNP C9K5V2 EXPRESSION TAG SEQADV 5LVY SER A 162 UNP C9K5V2 EXPRESSION TAG SEQRES 1 A 154 ASN SER CYS SER LEU SER ILE SER SER PRO ASP PRO VAL SEQRES 2 A 154 THR TYR THR ILE PRO THR ASP LYS GLY ASP LYS TYR ILE SEQRES 3 A 154 ASN PHE LYS LEU ASP VAL PRO ASP PRO ARG CYS LYS ALA SEQRES 4 A 154 LEU GLY GLY THR VAL TYR PHE TRP GLY ALA ASP THR ARG SEQRES 5 A 154 ASP GLY LYS LEU VAL MET LYS LYS GLY GLN ASP LYS TYR SEQRES 6 A 154 THR LEU MET THR THR TYR GLY GLY ALA VAL GLN GLN GLN SEQRES 7 A 154 LEU GLY GLY GLY TYR GLY TYR TYR HIS VAL SER GLN LYS SEQRES 8 A 154 THR PRO PRO GLN THR ILE SER GLY VAL VAL SER LYS ASN SEQRES 9 A 154 VAL GLY TYR LYS PRO GLY GLN TYR THR VAL GLU LEU THR SEQRES 10 A 154 GLY PHE PHE SER LEU ASN ASP ASN LYS GLN ALA ASN PRO SEQRES 11 A 154 THR PRO SER SER LEU THR SER LYS ALA ALA GLY LYS ASN SEQRES 12 A 154 ILE VAL SER SER THR GLY THR ILE THR ILE SER HELIX 1 AA1 ASP A 42 ALA A 47 1 6 HELIX 2 AA2 THR A 139 LYS A 146 5 8 SHEET 1 AA1 3 SER A 14 SER A 16 0 SHEET 2 AA1 3 TYR A 33 ASP A 39 -1 O ASP A 39 N SER A 14 SHEET 3 AA1 3 GLN A 103 VAL A 108 -1 O ILE A 105 N PHE A 36 SHEET 1 AA2 5 VAL A 21 THR A 24 0 SHEET 2 AA2 5 SER A 155 SER A 162 1 O THR A 160 N VAL A 21 SHEET 3 AA2 5 GLY A 118 LEU A 124 -1 N VAL A 122 O GLY A 157 SHEET 4 AA2 5 LEU A 64 LYS A 68 -1 N LYS A 67 O THR A 121 SHEET 5 AA2 5 ASP A 71 LEU A 75 -1 O ASP A 71 N LYS A 68 SHEET 1 AA3 2 THR A 51 TYR A 53 0 SHEET 2 AA3 2 PHE A 127 SER A 129 -1 O PHE A 127 N TYR A 53 SSBOND 1 CYS A 11 CYS A 45 1555 1555 2.03 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1