HEADER    OXIDOREDUCTASE                          15-SEP-16   5LW9              
TITLE     CRYSTAL STRUCTURE OF HUMAN JARID1B IN COMPLEX WITH S40563A            
COMPND    MOL_ID: 1;                                                            
COMPND   2 MOLECULE: LYSINE-SPECIFIC DEMETHYLASE 5B,LYSINE-SPECIFIC DEMETHYLASE 
COMPND   3 5B;                                                                  
COMPND   4 CHAIN: A;                                                            
COMPND   5 SYNONYM: CANCER/TESTIS ANTIGEN 31,CT31,HISTONE DEMETHYLASE JARID1B,  
COMPND   6 JUMONJI/ARID DOMAIN-CONTAINING PROTEIN 1B,PLU-1,RETINOBLASTOMA-      
COMPND   7 BINDING PROTEIN 2 HOMOLOG 1,RBP2-H1,CANCER/TESTIS ANTIGEN 31,CT31,   
COMPND   8 HISTONE DEMETHYLASE JARID1B,JUMONJI/ARID DOMAIN-CONTAINING PROTEIN   
COMPND   9 1B,PLU-1,RETINOBLASTOMA-BINDING PROTEIN 2 HOMOLOG 1,RBP2-H1;         
COMPND  10 EC: 1.14.11.-,1.14.11.-;                                             
COMPND  11 ENGINEERED: YES;                                                     
COMPND  12 OTHER_DETAILS: CCT365714                                             
SOURCE    MOL_ID: 1;                                                            
SOURCE   2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;                                   
SOURCE   3 ORGANISM_COMMON: HUMAN;                                              
SOURCE   4 ORGANISM_TAXID: 9606;                                                
SOURCE   5 GENE: KDM5B, JARID1B, PLU1, RBBP2H1;                                 
SOURCE   6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA;                            
SOURCE   7 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM;                             
SOURCE   8 EXPRESSION_SYSTEM_TAXID: 7108;                                       
SOURCE   9 EXPRESSION_SYSTEM_CELL: SF9;                                         
SOURCE  10 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS;                          
SOURCE  11 EXPRESSION_SYSTEM_PLASMID: PFB-LIC-BSE                               
KEYWDS    LYSINE-SPECIFIC DEMETHYLASE 5B, OXIDOREDUCTASE                        
EXPDTA    X-RAY DIFFRACTION                                                     
AUTHOR    V.SRIKANNATHASAN,Y.V.LE BIHAN,A.SZYKOWSKA,C.JOHANSSON,C.GILEADI,      
AUTHOR   2 C.H.ARROWSMITH,A.M.EDWARDS,C.BOUNTRA,F.VON DELFT,U.OPPERMANN,K.HUBER 
REVDAT   4   06-NOV-24 5LW9    1       REMARK                                   
REVDAT   3   17-JAN-24 5LW9    1       REMARK                                   
REVDAT   2   16-OCT-19 5LW9    1       REMARK                                   
REVDAT   1   28-SEP-16 5LW9    0                                                
JRNL        AUTH   V.SRIKANNATHASAN                                             
JRNL        TITL   CRYSTAL STRUCTURE OF HUMAN JARID1B IN COMPLEX WITH S40563A   
JRNL        REF    TO BE PUBLISHED                                              
JRNL        REFN                                                                
REMARK   2                                                                      
REMARK   2 RESOLUTION.    2.30 ANGSTROMS.                                       
REMARK   3                                                                      
REMARK   3 REFINEMENT.                                                          
REMARK   3   PROGRAM     : PHENIX                                               
REMARK   3   AUTHORS     : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN            
REMARK   3               : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE,           
REMARK   3               : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER,            
REMARK   3               : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY,              
REMARK   3               : REETAL PAI,RANDY READ,JANE RICHARDSON,               
REMARK   3               : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI,           
REMARK   3               : NICHOLAS SAUTER,JACOB SMITH,LAURENT                  
REMARK   3               : STORONI,TOM TERWILLIGER,PETER ZWART                  
REMARK   3                                                                      
REMARK   3    REFINEMENT TARGET : NULL                                          
REMARK   3                                                                      
REMARK   3  DATA USED IN REFINEMENT.                                            
REMARK   3   RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30                           
REMARK   3   RESOLUTION RANGE LOW  (ANGSTROMS) : 64.92                          
REMARK   3   MIN(FOBS/SIGMA_FOBS)              : 1.340                          
REMARK   3   COMPLETENESS FOR RANGE        (%) : 99.7                           
REMARK   3   NUMBER OF REFLECTIONS             : 41201                          
REMARK   3                                                                      
REMARK   3  FIT TO DATA USED IN REFINEMENT.                                     
REMARK   3   R VALUE     (WORKING + TEST SET) : 0.186                           
REMARK   3   R VALUE            (WORKING SET) : 0.185                           
REMARK   3   FREE R VALUE                     : 0.218                           
REMARK   3   FREE R VALUE TEST SET SIZE   (%) : 5.080                           
REMARK   3   FREE R VALUE TEST SET COUNT      : 2091                            
REMARK   3                                                                      
REMARK   3  FIT TO DATA USED IN REFINEMENT (IN BINS).                           
REMARK   3   BIN  RESOLUTION RANGE  COMPL.    NWORK NFREE   RWORK  RFREE        
REMARK   3     1 64.9412 -  5.6713    1.00     2856   141  0.1774 0.2100        
REMARK   3     2  5.6713 -  4.5018    1.00     2682   152  0.1427 0.1579        
REMARK   3     3  4.5018 -  3.9328    1.00     2648   141  0.1406 0.1742        
REMARK   3     4  3.9328 -  3.5733    1.00     2641   120  0.1650 0.1958        
REMARK   3     5  3.5733 -  3.3172    1.00     2621   130  0.1891 0.2221        
REMARK   3     6  3.3172 -  3.1216    1.00     2607   135  0.2009 0.2233        
REMARK   3     7  3.1216 -  2.9653    1.00     2597   146  0.2052 0.2656        
REMARK   3     8  2.9653 -  2.8362    1.00     2573   159  0.2167 0.2645        
REMARK   3     9  2.8362 -  2.7270    1.00     2582   129  0.2309 0.2847        
REMARK   3    10  2.7270 -  2.6329    1.00     2556   141  0.2385 0.2846        
REMARK   3    11  2.6329 -  2.5506    1.00     2530   161  0.2410 0.2798        
REMARK   3    12  2.5506 -  2.4777    1.00     2590   139  0.2573 0.2960        
REMARK   3    13  2.4777 -  2.4124    1.00     2555   152  0.2729 0.2972        
REMARK   3    14  2.4124 -  2.3536    1.00     2581   117  0.2842 0.3626        
REMARK   3    15  2.3536 -  2.3001    0.97     2491   128  0.3005 0.3194        
REMARK   3                                                                      
REMARK   3  BULK SOLVENT MODELLING.                                             
REMARK   3   METHOD USED        : NULL                                          
REMARK   3   SOLVENT RADIUS     : 1.11                                          
REMARK   3   SHRINKAGE RADIUS   : 0.90                                          
REMARK   3   K_SOL              : NULL                                          
REMARK   3   B_SOL              : NULL                                          
REMARK   3                                                                      
REMARK   3  ERROR ESTIMATES.                                                    
REMARK   3   COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED)     : 0.310            
REMARK   3   PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.710           
REMARK   3                                                                      
REMARK   3  B VALUES.                                                           
REMARK   3   FROM WILSON PLOT           (A**2) : NULL                           
REMARK   3   MEAN B VALUE      (OVERALL, A**2) : 66.61                          
REMARK   3   OVERALL ANISOTROPIC B VALUE.                                       
REMARK   3    B11 (A**2) : NULL                                                 
REMARK   3    B22 (A**2) : NULL                                                 
REMARK   3    B33 (A**2) : NULL                                                 
REMARK   3    B12 (A**2) : NULL                                                 
REMARK   3    B13 (A**2) : NULL                                                 
REMARK   3    B23 (A**2) : NULL                                                 
REMARK   3                                                                      
REMARK   3  TWINNING INFORMATION.                                               
REMARK   3   FRACTION: NULL                                                     
REMARK   3   OPERATOR: NULL                                                     
REMARK   3                                                                      
REMARK   3  DEVIATIONS FROM IDEAL VALUES.                                       
REMARK   3                 RMSD          COUNT                                  
REMARK   3   BOND      :  0.009           3855                                  
REMARK   3   ANGLE     :  1.177           5250                                  
REMARK   3   CHIRALITY :  0.045            556                                  
REMARK   3   PLANARITY :  0.006            708                                  
REMARK   3   DIHEDRAL  : 13.480           1415                                  
REMARK   3                                                                      
REMARK   3  TLS DETAILS                                                         
REMARK   3   NUMBER OF TLS GROUPS  : 1                                          
REMARK   3   TLS GROUP : 1                                                      
REMARK   3    SELECTION: ALL                                                    
REMARK   3    ORIGIN FOR THE GROUP (A):  77.6548  66.2967  11.9237              
REMARK   3    T TENSOR                                                          
REMARK   3      T11:   0.3572 T22:   0.6448                                     
REMARK   3      T33:   0.4182 T12:  -0.0383                                     
REMARK   3      T13:   0.0180 T23:  -0.0705                                     
REMARK   3    L TENSOR                                                          
REMARK   3      L11:   3.3062 L22:   0.4433                                     
REMARK   3      L33:   0.2120 L12:   0.3693                                     
REMARK   3      L13:   0.2843 L23:  -0.0733                                     
REMARK   3    S TENSOR                                                          
REMARK   3      S11:   0.0134 S12:  -0.0570 S13:   0.0764                       
REMARK   3      S21:   0.0028 S22:   0.0042 S23:   0.0336                       
REMARK   3      S31:  -0.0142 S32:   0.0890 S33:  -0.0296                       
REMARK   3                                                                      
REMARK   3  NCS DETAILS                                                         
REMARK   3   NUMBER OF NCS GROUPS : NULL                                        
REMARK   3                                                                      
REMARK   3  OTHER REFINEMENT REMARKS: NULL                                      
REMARK   4                                                                      
REMARK   4 5LW9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11                         
REMARK 100                                                                      
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 15-SEP-16.                  
REMARK 100 THE DEPOSITION ID IS D_1200001457.                                   
REMARK 200                                                                      
REMARK 200 EXPERIMENTAL DETAILS                                                 
REMARK 200  EXPERIMENT TYPE                : X-RAY DIFFRACTION                  
REMARK 200  DATE OF DATA COLLECTION        : 30-NOV-15                          
REMARK 200  TEMPERATURE           (KELVIN) : 100                                
REMARK 200  PH                             : 7.5                                
REMARK 200  NUMBER OF CRYSTALS USED        : 1                                  
REMARK 200                                                                      
REMARK 200  SYNCHROTRON              (Y/N) : Y                                  
REMARK 200  RADIATION SOURCE               : DIAMOND                            
REMARK 200  BEAMLINE                       : I24                                
REMARK 200  X-RAY GENERATOR MODEL          : NULL                               
REMARK 200  MONOCHROMATIC OR LAUE    (M/L) : M                                  
REMARK 200  WAVELENGTH OR RANGE        (A) : 0.96859                            
REMARK 200  MONOCHROMATOR                  : M                                  
REMARK 200  OPTICS                         : NULL                               
REMARK 200                                                                      
REMARK 200  DETECTOR TYPE                  : PIXEL                              
REMARK 200  DETECTOR MANUFACTURER          : DECTRIS PILATUS 6M                 
REMARK 200  INTENSITY-INTEGRATION SOFTWARE : XIA2                               
REMARK 200  DATA SCALING SOFTWARE          : XDS                                
REMARK 200                                                                      
REMARK 200  NUMBER OF UNIQUE REFLECTIONS   : 41284                              
REMARK 200  RESOLUTION RANGE HIGH      (A) : 2.300                              
REMARK 200  RESOLUTION RANGE LOW       (A) : 64.920                             
REMARK 200  REJECTION CRITERIA  (SIGMA(I)) : NULL                               
REMARK 200                                                                      
REMARK 200 OVERALL.                                                             
REMARK 200  COMPLETENESS FOR RANGE     (%) : 99.8                               
REMARK 200  DATA REDUNDANCY                : 16.20                              
REMARK 200  R MERGE                    (I) : 0.13900                            
REMARK 200  R SYM                      (I) : NULL                               
REMARK 200  <I/SIGMA(I)> FOR THE DATA SET  : 15.4000                            
REMARK 200                                                                      
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.                                     
REMARK 200  HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.36                     
REMARK 200  HIGHEST RESOLUTION SHELL, RANGE LOW  (A) : NULL                     
REMARK 200  COMPLETENESS FOR SHELL     (%) : 98.4                               
REMARK 200  DATA REDUNDANCY IN SHELL       : 15.80                              
REMARK 200  R MERGE FOR SHELL          (I) : 2.81300                            
REMARK 200  R SYM FOR SHELL            (I) : NULL                               
REMARK 200  <I/SIGMA(I)> FOR SHELL         : NULL                               
REMARK 200                                                                      
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH                              
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT        
REMARK 200 SOFTWARE USED: MOLREP                                                
REMARK 200 STARTING MODEL: 5A1F                                                 
REMARK 200                                                                      
REMARK 200 REMARK: NULL                                                         
REMARK 280                                                                      
REMARK 280 CRYSTAL                                                              
REMARK 280 SOLVENT CONTENT, VS   (%): 71.12                                     
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.26                     
REMARK 280                                                                      
REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M HEPES PH 8.0, 0.8M POTASSIUM        
REMARK 280  PHOSPHATE-DIBASIC, 0.8M SODIUM PHOSPHATE MONOBASIC, PH 7.5,         
REMARK 280  VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K                     
REMARK 290                                                                      
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY                                            
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2                         
REMARK 290                                                                      
REMARK 290      SYMOP   SYMMETRY                                                
REMARK 290     NNNMMM   OPERATOR                                                
REMARK 290       1555   X,Y,Z                                                   
REMARK 290       2555   -Y,X-Y,Z+2/3                                            
REMARK 290       3555   -X+Y,-X,Z+1/3                                           
REMARK 290       4555   -X,-Y,Z+1/2                                             
REMARK 290       5555   Y,-X+Y,Z+1/6                                            
REMARK 290       6555   X-Y,X,Z+5/6                                             
REMARK 290       7555   Y,X,-Z+2/3                                              
REMARK 290       8555   X-Y,-Y,-Z                                               
REMARK 290       9555   -X,-X+Y,-Z+1/3                                          
REMARK 290      10555   -Y,-X,-Z+1/6                                            
REMARK 290      11555   -X+Y,Y,-Z+1/2                                           
REMARK 290      12555   X,X-Y,-Z+5/6                                            
REMARK 290                                                                      
REMARK 290     WHERE NNN -> OPERATOR NUMBER                                     
REMARK 290           MMM -> TRANSLATION VECTOR                                  
REMARK 290                                                                      
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS                            
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM             
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY                
REMARK 290 RELATED MOLECULES.                                                   
REMARK 290   SMTRY1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 290   SMTRY3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 290   SMTRY1   2 -0.500000 -0.866025  0.000000        0.00000            
REMARK 290   SMTRY2   2  0.866025 -0.500000  0.000000        0.00000            
REMARK 290   SMTRY3   2  0.000000  0.000000  1.000000      101.64667            
REMARK 290   SMTRY1   3 -0.500000  0.866025  0.000000        0.00000            
REMARK 290   SMTRY2   3 -0.866025 -0.500000  0.000000        0.00000            
REMARK 290   SMTRY3   3  0.000000  0.000000  1.000000       50.82333            
REMARK 290   SMTRY1   4 -1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY2   4  0.000000 -1.000000  0.000000        0.00000            
REMARK 290   SMTRY3   4  0.000000  0.000000  1.000000       76.23500            
REMARK 290   SMTRY1   5  0.500000  0.866025  0.000000        0.00000            
REMARK 290   SMTRY2   5 -0.866025  0.500000  0.000000        0.00000            
REMARK 290   SMTRY3   5  0.000000  0.000000  1.000000       25.41167            
REMARK 290   SMTRY1   6  0.500000 -0.866025  0.000000        0.00000            
REMARK 290   SMTRY2   6  0.866025  0.500000  0.000000        0.00000            
REMARK 290   SMTRY3   6  0.000000  0.000000  1.000000      127.05833            
REMARK 290   SMTRY1   7 -0.500000  0.866025  0.000000        0.00000            
REMARK 290   SMTRY2   7  0.866025  0.500000  0.000000        0.00000            
REMARK 290   SMTRY3   7  0.000000  0.000000 -1.000000      101.64667            
REMARK 290   SMTRY1   8  1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY2   8  0.000000 -1.000000  0.000000        0.00000            
REMARK 290   SMTRY3   8  0.000000  0.000000 -1.000000        0.00000            
REMARK 290   SMTRY1   9 -0.500000 -0.866025  0.000000        0.00000            
REMARK 290   SMTRY2   9 -0.866025  0.500000  0.000000        0.00000            
REMARK 290   SMTRY3   9  0.000000  0.000000 -1.000000       50.82333            
REMARK 290   SMTRY1  10  0.500000 -0.866025  0.000000        0.00000            
REMARK 290   SMTRY2  10 -0.866025 -0.500000  0.000000        0.00000            
REMARK 290   SMTRY3  10  0.000000  0.000000 -1.000000       25.41167            
REMARK 290   SMTRY1  11 -1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY2  11  0.000000  1.000000  0.000000        0.00000            
REMARK 290   SMTRY3  11  0.000000  0.000000 -1.000000       76.23500            
REMARK 290   SMTRY1  12  0.500000  0.866025  0.000000        0.00000            
REMARK 290   SMTRY2  12  0.866025 -0.500000  0.000000        0.00000            
REMARK 290   SMTRY3  12  0.000000  0.000000 -1.000000      127.05833            
REMARK 290                                                                      
REMARK 290 REMARK: NULL                                                         
REMARK 300                                                                      
REMARK 300 BIOMOLECULE: 1                                                       
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM                
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN                  
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON               
REMARK 300 BURIED SURFACE AREA.                                                 
REMARK 350                                                                      
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN           
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE                
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS          
REMARK 350 GIVEN BELOW.  BOTH NON-CRYSTALLOGRAPHIC AND                          
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.                               
REMARK 350                                                                      
REMARK 350 BIOMOLECULE: 1                                                       
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC                  
REMARK 350 SOFTWARE USED: PISA                                                  
REMARK 350 TOTAL BURIED SURFACE AREA: 1490 ANGSTROM**2                          
REMARK 350 SURFACE AREA OF THE COMPLEX: 19650 ANGSTROM**2                       
REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 5.0 KCAL/MOL                          
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A                                     
REMARK 350   BIOMT1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 350   BIOMT2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 350   BIOMT3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 465                                                                      
REMARK 465 MISSING RESIDUES                                                     
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE                       
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN               
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)                
REMARK 465                                                                      
REMARK 465   M RES C SSSEQI                                                     
REMARK 465     SER A    24                                                      
REMARK 465     LEU A   369                                                      
REMARK 465     GLY A   370                                                      
REMARK 465     GLY A   371                                                      
REMARK 465     GLY A   372                                                      
REMARK 465     GLY A   373                                                      
REMARK 465     LYS A   444                                                      
REMARK 465     TYR A   755                                                      
REMARK 465     ASN A   756                                                      
REMARK 465     GLU A   757                                                      
REMARK 465     TRP A   758                                                      
REMARK 465     ALA A   759                                                      
REMARK 465     LEU A   760                                                      
REMARK 465     ASN A   761                                                      
REMARK 465     VAL A   762                                                      
REMARK 465     ASN A   763                                                      
REMARK 465     GLU A   764                                                      
REMARK 465     ALA A   765                                                      
REMARK 465     LEU A   766                                                      
REMARK 465     GLU A   767                                                      
REMARK 465     ALA A   768                                                      
REMARK 465     LYS A   769                                                      
REMARK 465     ILE A   770                                                      
REMARK 465     ASN A   771                                                      
REMARK 465     LYS A   772                                                      
REMARK 470                                                                      
REMARK 470 MISSING ATOM                                                         
REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER;           
REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;          
REMARK 470 I=INSERTION CODE):                                                   
REMARK 470   M RES CSSEQI  ATOMS                                                
REMARK 470     GLU A  40    CG   CD   OE1  OE2                                  
REMARK 470     LYS A  51    CD   CE   NZ                                        
REMARK 470     LYS A 100    CG   CD   CE   NZ                                   
REMARK 470     LYS A 408    CE   NZ                                             
REMARK 470     SER A 431    OG                                                  
REMARK 470     LYS A 432    CD   CE   NZ                                        
REMARK 470     GLU A 433    CG   CD   OE1  OE2                                  
REMARK 470     LYS A 446    NZ                                                  
REMARK 470     ASP A 478    CG   OD1  OD2                                       
REMARK 470     LYS A 483    CD   CE   NZ                                        
REMARK 470     LYS A 535    CD   CE   NZ                                        
REMARK 470     LYS A 536    CD   CE   NZ                                        
REMARK 470     GLU A 540    CG   CD   OE1  OE2                                  
REMARK 470     SER A 544    OG                                                  
REMARK 470     GLN A 545    CG   CD   OE1  NE2                                  
REMARK 470     ASP A 547    CG   OD1  OD2                                       
REMARK 470     LEU A 548    CG   CD1  CD2                                       
REMARK 470     LEU A 549    CG   CD1  CD2                                       
REMARK 470     LEU A 620    CD1  CD2                                            
REMARK 470     LYS A 639    NZ                                                  
REMARK 470     LYS A 653    CE   NZ                                             
REMARK 470     LYS A 671    NZ                                                  
REMARK 470     LYS A 694    NZ                                                  
REMARK 470     LYS A 709    CE   NZ                                             
REMARK 470     LYS A 720    CG   CD   CE   NZ                                   
REMARK 470     GLU A 753    CD   OE1  OE2                                       
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: CLOSE CONTACTS                                             
REMARK 500                                                                      
REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC             
REMARK 500 SYMMETRY ARE IN CLOSE CONTACT.  AN ATOM LOCATED WITHIN 0.15          
REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A           
REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375             
REMARK 500 INSTEAD OF REMARK 500.  ATOMS WITH NON-BLANK ALTERNATE               
REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS.            
REMARK 500                                                                      
REMARK 500 DISTANCE CUTOFF:                                                     
REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS              
REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS                  
REMARK 500                                                                      
REMARK 500  ATM1  RES C  SSEQI   ATM2  RES C  SSEQI  SSYMOP   DISTANCE          
REMARK 500   O    HOH A   979     O    HOH A   979     9765     1.91            
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: TORSION ANGLES                                             
REMARK 500                                                                      
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:            
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                             
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)                    
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-           
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400            
REMARK 500                                                                      
REMARK 500  M RES CSSEQI        PSI       PHI                                   
REMARK 500    ALA A  75       67.22   -108.80                                   
REMARK 500    CYS A 480      -49.66     60.63                                   
REMARK 500    PHE A 493       -8.33     77.15                                   
REMARK 500    ARG A 690       34.38   -141.06                                   
REMARK 500    PHE A 700      -55.22   -145.03                                   
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 620                                                                      
REMARK 620 METAL COORDINATION                                                   
REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE):                             
REMARK 620                                                                      
REMARK 620 COORDINATION ANGLES FOR:  M RES CSSEQI METAL                         
REMARK 620                              MN A 802  MN                            
REMARK 620 N RES CSSEQI ATOM                                                    
REMARK 620 1 LEU A  90   O                                                      
REMARK 620 2 ASN A  91   OD1  70.9                                              
REMARK 620 N                    1                                               
REMARK 620                                                                      
REMARK 620 COORDINATION ANGLES FOR:  M RES CSSEQI METAL                         
REMARK 620                              MN A 809  MN                            
REMARK 620 N RES CSSEQI ATOM                                                    
REMARK 620 1 HIS A 499   NE2                                                    
REMARK 620 2 GLU A 501   OE2  96.2                                              
REMARK 620 3 HIS A 587   NE2  83.6  91.3                                        
REMARK 620 4 5UJ A 808   N3   94.8 166.9  97.0                                  
REMARK 620 5 5UJ A 808   N2   80.4  97.0 162.7  77.8                            
REMARK 620 6 HOH A 956   O   173.6  88.3 100.8  80.2  94.6                      
REMARK 620 N                    1     2     3     4     5                       
REMARK 620                                                                      
REMARK 620 COORDINATION ANGLES FOR:  M RES CSSEQI METAL                         
REMARK 620                              ZN A 801  ZN                            
REMARK 620 N RES CSSEQI ATOM                                                    
REMARK 620 1 CYS A 692   SG                                                     
REMARK 620 2 CYS A 695   SG  106.8                                              
REMARK 620 3 CYS A 715   SG  118.5 112.2                                        
REMARK 620 4 HIS A 718   ND1 109.2 108.9 100.9                                  
REMARK 620 N                    1     2     3                                   
REMARK 800                                                                      
REMARK 800 SITE                                                                 
REMARK 800 SITE_IDENTIFIER: AC1                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 801                  
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: AC2                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: binding site for residue MN A 802                  
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: AC3                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 803                 
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: AC4                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 804                 
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: AC5                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: binding site for residue DMS A 805                 
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: AC6                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: binding site for residue DMS A 806                 
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: AC7                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: binding site for residue DMS A 807                 
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: AC8                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: binding site for residue 5UJ A 808                 
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: AC9                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: binding site for residue MN A 809                  
DBREF  5LW9 A   26    99  UNP    Q9UGL1   KDM5B_HUMAN     26     99             
DBREF  5LW9 A  374   772  UNP    Q9UGL1   KDM5B_HUMAN    374    772             
SEQADV 5LW9 SER A   24  UNP  Q9UGL1              EXPRESSION TAG                 
SEQADV 5LW9 MET A   25  UNP  Q9UGL1              EXPRESSION TAG                 
SEQADV 5LW9 LYS A  100  UNP  Q9UGL1              LINKER                         
SEQADV 5LW9 LEU A  369  UNP  Q9UGL1              LINKER                         
SEQADV 5LW9 GLY A  370  UNP  Q9UGL1              LINKER                         
SEQADV 5LW9 GLY A  371  UNP  Q9UGL1              LINKER                         
SEQADV 5LW9 GLY A  372  UNP  Q9UGL1              LINKER                         
SEQADV 5LW9 GLY A  373  UNP  Q9UGL1              LINKER                         
SEQRES   1 A  481  SER MET PHE LEU PRO PRO PRO GLU CYS PRO VAL PHE GLU          
SEQRES   2 A  481  PRO SER TRP GLU GLU PHE ALA ASP PRO PHE ALA PHE ILE          
SEQRES   3 A  481  HIS LYS ILE ARG PRO ILE ALA GLU GLN THR GLY ILE CYS          
SEQRES   4 A  481  LYS VAL ARG PRO PRO PRO ASP TRP GLN PRO PRO PHE ALA          
SEQRES   5 A  481  CYS ASP VAL ASP LYS LEU HIS PHE THR PRO ARG ILE GLN          
SEQRES   6 A  481  ARG LEU ASN GLU LEU GLU ALA GLN THR ARG VAL LYS LEU          
SEQRES   7 A  481  GLY GLY GLY GLY ALA ARG ASP TYR THR LEU ARG THR PHE          
SEQRES   8 A  481  GLY GLU MET ALA ASP ALA PHE LYS SER ASP TYR PHE ASN          
SEQRES   9 A  481  MET PRO VAL HIS MET VAL PRO THR GLU LEU VAL GLU LYS          
SEQRES  10 A  481  GLU PHE TRP ARG LEU VAL SER THR ILE GLU GLU ASP VAL          
SEQRES  11 A  481  THR VAL GLU TYR GLY ALA ASP ILE ALA SER LYS GLU PHE          
SEQRES  12 A  481  GLY SER GLY PHE PRO VAL ARG ASP GLY LYS ILE LYS LEU          
SEQRES  13 A  481  SER PRO GLU GLU GLU GLU TYR LEU ASP SER GLY TRP ASN          
SEQRES  14 A  481  LEU ASN ASN MET PRO VAL MET GLU GLN SER VAL LEU ALA          
SEQRES  15 A  481  HIS ILE THR ALA ASP ILE CYS GLY MET LYS LEU PRO TRP          
SEQRES  16 A  481  LEU TYR VAL GLY MET CYS PHE SER SER PHE CYS TRP HIS          
SEQRES  17 A  481  ILE GLU ASP HIS TRP SER TYR SER ILE ASN TYR LEU HIS          
SEQRES  18 A  481  TRP GLY GLU PRO LYS THR TRP TYR GLY VAL PRO GLY TYR          
SEQRES  19 A  481  ALA ALA GLU GLN LEU GLU ASN VAL MET LYS LYS LEU ALA          
SEQRES  20 A  481  PRO GLU LEU PHE VAL SER GLN PRO ASP LEU LEU HIS GLN          
SEQRES  21 A  481  LEU VAL THR ILE MET ASN PRO ASN THR LEU MET THR HIS          
SEQRES  22 A  481  GLU VAL PRO VAL TYR ARG THR ASN GLN CYS ALA GLY GLU          
SEQRES  23 A  481  PHE VAL ILE THR PHE PRO ARG ALA TYR HIS SER GLY PHE          
SEQRES  24 A  481  ASN GLN GLY PHE ASN PHE ALA GLU ALA VAL ASN PHE CYS          
SEQRES  25 A  481  THR VAL ASP TRP LEU PRO LEU GLY ARG GLN CYS VAL GLU          
SEQRES  26 A  481  HIS TYR ARG LEU LEU HIS ARG TYR CYS VAL PHE SER HIS          
SEQRES  27 A  481  ASP GLU MET ILE CYS LYS MET ALA SER LYS ALA ASP VAL          
SEQRES  28 A  481  LEU ASP VAL VAL VAL ALA SER THR VAL GLN LYS ASP MET          
SEQRES  29 A  481  ALA ILE MET ILE GLU ASP GLU LYS ALA LEU ARG GLU THR          
SEQRES  30 A  481  VAL ARG LYS LEU GLY VAL ILE ASP SER GLU ARG MET ASP          
SEQRES  31 A  481  PHE GLU LEU LEU PRO ASP ASP GLU ARG GLN CYS VAL LYS          
SEQRES  32 A  481  CYS LYS THR THR CYS PHE MET SER ALA ILE SER CYS SER          
SEQRES  33 A  481  CYS LYS PRO GLY LEU LEU VAL CYS LEU HIS HIS VAL LYS          
SEQRES  34 A  481  GLU LEU CYS SER CYS PRO PRO TYR LYS TYR LYS LEU ARG          
SEQRES  35 A  481  TYR ARG TYR THR LEU ASP ASP LEU TYR PRO MET MET ASN          
SEQRES  36 A  481  ALA LEU LYS LEU ARG ALA GLU SER TYR ASN GLU TRP ALA          
SEQRES  37 A  481  LEU ASN VAL ASN GLU ALA LEU GLU ALA LYS ILE ASN LYS          
HET     ZN  A 801       1                                                       
HET     MN  A 802       1                                                       
HET    EDO  A 803       4                                                       
HET    EDO  A 804       4                                                       
HET    DMS  A 805       4                                                       
HET    DMS  A 806       4                                                       
HET    DMS  A 807       4                                                       
HET    5UJ  A 808      32                                                       
HET     MN  A 809       1                                                       
HETNAM      ZN ZINC ION                                                         
HETNAM      MN MANGANESE (II) ION                                               
HETNAM     EDO 1,2-ETHANEDIOL                                                   
HETNAM     DMS DIMETHYL SULFOXIDE                                               
HETNAM     5UJ 8-[4-[2-[4-[3,5-BIS(CHLORANYL)PHENYL]PIPERIDIN-1-                
HETNAM   2 5UJ  YL]ETHYL]PYRAZOL-1-YL]-3~{H}-PYRIDO[3,4-D]PYRIMIDIN-4-          
HETNAM   3 5UJ  ONE                                                             
HETSYN     EDO ETHYLENE GLYCOL                                                  
FORMUL   2   ZN    ZN 2+                                                        
FORMUL   3   MN    2(MN 2+)                                                     
FORMUL   4  EDO    2(C2 H6 O2)                                                  
FORMUL   6  DMS    3(C2 H6 O S)                                                 
FORMUL   9  5UJ    C23 H22 CL2 N6 O                                             
FORMUL  11  HOH   *110(H2 O)                                                    
HELIX    1 AA1 SER A   38  ALA A   43  1                                   6    
HELIX    2 AA2 ASP A   44  GLU A   57  1                                  14    
HELIX    3 AA3 LEU A  379  ASN A  395  1                                  17    
HELIX    4 AA4 PRO A  397  VAL A  401  5                                   5    
HELIX    5 AA5 PRO A  402  THR A  416  1                                  15    
HELIX    6 AA6 SER A  431  GLY A  435  1                                   5    
HELIX    7 AA7 SER A  448  TYR A  454  1                                   7    
HELIX    8 AA8 ASN A  463  MET A  467  5                                   5    
HELIX    9 AA9 GLU A  501  SER A  505  5                                   5    
HELIX   10 AB1 PRO A  523  TYR A  525  5                                   3    
HELIX   11 AB2 ALA A  526  ALA A  538  1                                  13    
HELIX   12 AB3 PRO A  539  VAL A  543  5                                   5    
HELIX   13 AB4 ASN A  557  HIS A  564  1                                   8    
HELIX   14 AB5 THR A  604  ASP A  606  5                                   3    
HELIX   15 AB6 TRP A  607  LEU A  621  1                                  15    
HELIX   16 AB7 SER A  628  LYS A  639  1                                  12    
HELIX   17 AB8 ALA A  640  LEU A  643  5                                   4    
HELIX   18 AB9 ASP A  644  LEU A  672  1                                  29    
HELIX   19 AC1 ASP A  681  LEU A  685  5                                   5    
HELIX   20 AC2 PRO A  686  GLN A  691  5                                   6    
HELIX   21 AC3 HIS A  718  LEU A  722  5                                   5    
HELIX   22 AC4 PRO A  726  TYR A  728  5                                   3    
HELIX   23 AC5 THR A  737  GLU A  753  1                                  17    
SHEET    1 AA1 8 VAL A  34  PHE A  35  0                                        
SHEET    2 AA1 8 ILE A  61  VAL A  64  1  O  LYS A  63   N  PHE A  35           
SHEET    3 AA1 8 PHE A 578  THR A 581 -1  O  PHE A 578   N  VAL A  64           
SHEET    4 AA1 8 TYR A 506  GLY A 514 -1  N  SER A 507   O  THR A 581           
SHEET    5 AA1 8 ASN A 595  PHE A 602 -1  O  GLU A 598   N  TYR A 510           
SHEET    6 AA1 8 TRP A 486  GLY A 490 -1  N  TRP A 486   O  ALA A 599           
SHEET    7 AA1 8 THR A 422  ALA A 430 -1  N  GLY A 426   O  VAL A 489           
SHEET    8 AA1 8 ARG A  86  ARG A  89 -1  N  GLN A  88   O  VAL A 423           
SHEET    1 AA2 2 HIS A  82  PHE A  83  0                                        
SHEET    2 AA2 2 TYR A 377  THR A 378 -1  O  TYR A 377   N  PHE A  83           
SHEET    1 AA3 2 GLN A  96  THR A  97  0                                        
SHEET    2 AA3 2 LEU A 552  VAL A 553 -1  O  VAL A 553   N  GLN A  96           
SHEET    1 AA4 4 SER A 495  HIS A 499  0                                        
SHEET    2 AA4 4 HIS A 587  ASN A 591 -1  O  GLY A 589   N  PHE A 496           
SHEET    3 AA4 4 LYS A 517  GLY A 521 -1  N  TYR A 520   O  SER A 588           
SHEET    4 AA4 4 TYR A 569  GLN A 573 -1  O  GLN A 573   N  LYS A 517           
SHEET    1 AA5 3 ASP A 676  ARG A 679  0                                        
SHEET    2 AA5 3 TYR A 730  TYR A 734  1  O  LEU A 732   N  ASP A 676           
SHEET    3 AA5 3 SER A 702  CYS A 706 -1  N  ALA A 703   O  ARG A 733           
SSBOND   1 CYS A  708    CYS A  725                          1555   1555  2.02  
LINK         O   LEU A  90                MN    MN A 802     1555   1555  2.78  
LINK         OD1 ASN A  91                MN    MN A 802     1555   1555  2.14  
LINK         NE2 HIS A 499                MN    MN A 809     1555   1555  2.13  
LINK         OE2 GLU A 501                MN    MN A 809     1555   1555  2.06  
LINK         NE2 HIS A 587                MN    MN A 809     1555   1555  2.17  
LINK         SG  CYS A 692                ZN    ZN A 801     1555   1555  2.32  
LINK         SG  CYS A 695                ZN    ZN A 801     1555   1555  2.32  
LINK         SG  CYS A 715                ZN    ZN A 801     1555   1555  2.22  
LINK         ND1 HIS A 718                ZN    ZN A 801     1555   1555  2.03  
LINK         N3  5UJ A 808                MN    MN A 809     1555   1555  2.23  
LINK         N2  5UJ A 808                MN    MN A 809     1555   1555  1.96  
LINK        MN    MN A 809                 O   HOH A 956     1555   1555  2.15  
SITE     1 AC1  4 CYS A 692  CYS A 695  CYS A 715  HIS A 718                    
SITE     1 AC2  5 LEU A  90  ASN A  91  LEU A 413  THR A 416                    
SITE     2 AC2  5 GLU A 419                                                     
SITE     1 AC3  6 ASP A 630  CYS A 699  PHE A 700  MET A 701                    
SITE     2 AC3  6 SER A 702  HOH A 914                                          
SITE     1 AC4  2 GLY A 524  ARG A 584                                          
SITE     1 AC5  7 TRP A 504  GLU A 531  ARG A 584  HIS A 617                    
SITE     2 AC5  7 TYR A 618  LEU A 621  ARG A 623                               
SITE     1 AC6  8 TRP A 486  TYR A 488  GLU A 501  SER A 507                    
SITE     2 AC6  8 ALA A 599  VAL A 600  ASN A 601  5UJ A 808                    
SITE     1 AC7  5 ARG A  98  CYS A 497  HIS A 499  5UJ A 808                    
SITE     2 AC7  5 HOH A 959                                                     
SITE     1 AC8 17 TYR A 425  ASP A 428  GLY A 481  TRP A 486                    
SITE     2 AC8 17 TYR A 488  PHE A 496  HIS A 499  GLU A 501                    
SITE     3 AC8 17 ASN A 509  LYS A 517  TRP A 519  HIS A 587                    
SITE     4 AC8 17 DMS A 806  DMS A 807   MN A 809  HOH A 902                    
SITE     5 AC8 17 HOH A 956                                                     
SITE     1 AC9  5 HIS A 499  GLU A 501  HIS A 587  5UJ A 808                    
SITE     2 AC9  5 HOH A 956                                                     
CRYST1  142.960  142.960  152.470  90.00  90.00 120.00 P 65 2 2     12          
ORIGX1      1.000000  0.000000  0.000000        0.00000                         
ORIGX2      0.000000  1.000000  0.000000        0.00000                         
ORIGX3      0.000000  0.000000  1.000000        0.00000                         
SCALE1      0.006995  0.004039  0.000000        0.00000                         
SCALE2      0.000000  0.008077  0.000000        0.00000                         
SCALE3      0.000000  0.000000  0.006559        0.00000