HEADER OXIDOREDUCTASE 20-SEP-16 5LXE TITLE F420-DEPENDENT GLUCOSE-6-PHOSPHATE DEHYDROGENASE FROM RHODOCOCCUS TITLE 2 JOSTII RHA1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: F420-DEPENDENT GLUCOSE-6-PHOSPHATE DEHYDROGENASE 1; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: G6PD 1; COMPND 5 EC: 1.1.98.2; COMPND 6 ENGINEERED: YES; COMPND 7 OTHER_DETAILS: THE GAP IN THE SEQUENCE ALIGNMENT IS DUE TO THE COMPND 8 DISORDER IN THE ELECTRON DENSITY MAP. SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RHODOCOCCUS JOSTII (STRAIN RHA1); SOURCE 3 ORGANISM_TAXID: 101510; SOURCE 4 GENE: FGD1, RHA1_RO11062; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS F420, GLUCOSE-6-PHOSPHATE DEHYDROGENASE, TIM BARREL, BACTERIAL KEYWDS 2 LUCIFERASE FAMILY, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR Q.-T.NGUYEN,G.TRINCO,C.BINDA,A.MATTEVI,M.W.FRAAIJE REVDAT 5 17-JAN-24 5LXE 1 REMARK REVDAT 4 31-JAN-18 5LXE 1 REMARK REVDAT 3 07-JUN-17 5LXE 1 JRNL REVDAT 2 29-MAR-17 5LXE 1 JRNL REVDAT 1 28-DEC-16 5LXE 0 JRNL AUTH Q.-T.NGUYEN,G.TRINCO,C.BINDA,A.MATTEVI,M.W.FRAAIJE JRNL TITL DISCOVERY AND CHARACTERIZATION OF AN F420-DEPENDENT JRNL TITL 2 GLUCOSE-6-PHOSPHATE DEHYDROGENASE (RH-FGD1) FROM RHODOCOCCUS JRNL TITL 3 JOSTII RHA1. JRNL REF APPL. MICROBIOL. BIOTECHNOL. V. 101 2831 2017 JRNL REFN ESSN 1432-0614 JRNL PMID 27966048 JRNL DOI 10.1007/S00253-016-8038-Y REMARK 2 REMARK 2 RESOLUTION. 1.47 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0155 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.47 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 62.54 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 3 NUMBER OF REFLECTIONS : 101407 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.158 REMARK 3 R VALUE (WORKING SET) : 0.156 REMARK 3 FREE R VALUE : 0.185 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 5293 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.47 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.51 REMARK 3 REFLECTION IN BIN (WORKING SET) : 7355 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.20 REMARK 3 BIN R VALUE (WORKING SET) : 0.2710 REMARK 3 BIN FREE R VALUE SET COUNT : 358 REMARK 3 BIN FREE R VALUE : 0.2510 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4882 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 22 REMARK 3 SOLVENT ATOMS : 571 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.02 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.37000 REMARK 3 B22 (A**2) : -1.51000 REMARK 3 B33 (A**2) : 1.14000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.062 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.065 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.048 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.315 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.977 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.968 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5080 ; 0.021 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 4787 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6889 ; 2.020 ; 1.960 REMARK 3 BOND ANGLES OTHERS (DEGREES): 11002 ; 1.074 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 638 ; 6.577 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 232 ;37.369 ;22.931 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 812 ;13.762 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 43 ;15.280 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 733 ; 0.129 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5788 ; 0.012 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1191 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2541 ; 2.135 ; 2.170 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2540 ; 2.135 ; 2.169 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3178 ; 2.949 ; 3.245 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 3179 ; 2.950 ; 3.246 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2539 ; 3.520 ; 2.602 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2539 ; 3.516 ; 2.603 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3710 ; 5.337 ; 3.741 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 5864 ; 6.740 ;27.539 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 5865 ; 6.740 ;27.545 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 2 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 1 A 40 4 REMARK 3 1 B 1 B 40 4 REMARK 3 2 A 50 A 334 4 REMARK 3 2 B 50 B 334 4 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 1 A (A): 4471 ; 0.62 ; 0.50 REMARK 3 MEDIUM THERMAL 1 B (A**2): 4471 ; 3.67 ; 2.00 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5LXE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 21-SEP-16. REMARK 100 THE DEPOSITION ID IS D_1200001513. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 31-AUG-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06DA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.71, 2.25 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 106774 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.470 REMARK 200 RESOLUTION RANGE LOW (A) : 88.780 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 200 DATA REDUNDANCY : 3.900 REMARK 200 R MERGE (I) : 0.05000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.47 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.50 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.55000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 3B4Y REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.94 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.16 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: AMMONIUM SULFATE, SODIUM ACETATE PH REMARK 280 4.6, PEG 4000, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 40.77000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 44.39000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 44.06000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 44.39000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 40.77000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 44.06000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR A 254 REMARK 465 PRO A 255 REMARK 465 GLU A 256 REMARK 465 GLN A 257 REMARK 465 LYS A 258 REMARK 465 HIS A 259 REMARK 465 SER A 260 REMARK 465 ILE A 261 REMARK 465 ASP A 262 REMARK 465 ASP A 263 REMARK 465 ALA A 335 REMARK 465 PRO B 250 REMARK 465 LEU B 251 REMARK 465 SER B 252 REMARK 465 LEU B 253 REMARK 465 THR B 254 REMARK 465 PRO B 255 REMARK 465 GLU B 256 REMARK 465 GLN B 257 REMARK 465 LYS B 258 REMARK 465 HIS B 259 REMARK 465 SER B 260 REMARK 465 ILE B 261 REMARK 465 ASP B 262 REMARK 465 ASP B 263 REMARK 465 PRO B 264 REMARK 465 ILE B 265 REMARK 465 GLU B 266 REMARK 465 MET B 267 REMARK 465 GLU B 268 REMARK 465 ARG B 269 REMARK 465 ALA B 270 REMARK 465 ALA B 271 REMARK 465 ASP B 272 REMARK 465 ALA B 273 REMARK 465 LEU B 274 REMARK 465 PRO B 275 REMARK 465 ILE B 276 REMARK 465 GLU B 277 REMARK 465 GLN B 278 REMARK 465 VAL B 279 REMARK 465 ALA B 335 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 636 O HOH A 665 2.14 REMARK 500 O HOH B 703 O HOH B 705 2.16 REMARK 500 O HOH B 577 O HOH B 649 2.17 REMARK 500 OE1 GLU A 277 O HOH A 501 2.18 REMARK 500 O HOH A 512 O HOH A 812 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 777 O HOH B 705 2454 2.11 REMARK 500 O HOH A 550 O HOH A 603 3555 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 TYR A 202 CE1 TYR A 202 CZ 0.093 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 63 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 ARG A 66 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG A 99 NE - CZ - NH1 ANGL. DEV. = -5.9 DEGREES REMARK 500 ARG A 99 NE - CZ - NH2 ANGL. DEV. = 7.0 DEGREES REMARK 500 MET A 138 CG - SD - CE ANGL. DEV. = -14.1 DEGREES REMARK 500 ARG A 246 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 ASP A 290 CB - CG - OD1 ANGL. DEV. = 5.5 DEGREES REMARK 500 MET B 74 CG - SD - CE ANGL. DEV. = 10.9 DEGREES REMARK 500 ARG B 79 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 ARG B 99 NE - CZ - NH2 ANGL. DEV. = 5.1 DEGREES REMARK 500 ARG B 130 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 MET B 207 CG - SD - CE ANGL. DEV. = -12.3 DEGREES REMARK 500 ASP B 315 CB - CG - OD1 ANGL. DEV. = 5.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 50 65.39 -165.27 REMARK 500 PHE A 78 -63.57 -123.22 REMARK 500 ASP A 145 -79.89 -115.88 REMARK 500 LYS A 205 -60.67 -105.37 REMARK 500 ASP B 38 74.38 -105.46 REMARK 500 ALA B 50 71.20 -164.80 REMARK 500 PHE B 78 -64.51 -121.18 REMARK 500 ASP B 148 78.08 -104.33 REMARK 500 TYR B 153 -39.01 -132.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 TYR A 96 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 817 DISTANCE = 6.00 ANGSTROMS REMARK 525 HOH A 818 DISTANCE = 6.39 ANGSTROMS REMARK 525 HOH A 819 DISTANCE = 9.72 ANGSTROMS REMARK 525 HOH A 820 DISTANCE = 9.82 ANGSTROMS REMARK 525 HOH B 751 DISTANCE = 6.76 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 403 DBREF 5LXE A 1 335 UNP Q0RVH7 FGD1_RHOJR 1 335 DBREF 5LXE B 1 335 UNP Q0RVH7 FGD1_RHOJR 1 335 SEQRES 1 A 335 MET VAL ILE LYS PHE GLY TYR LYS ALA SER ALA GLU GLN SEQRES 2 A 335 PHE GLY PRO ARG GLU LEU VAL GLU LEU GLY VAL LEU ALA SEQRES 3 A 335 GLU ALA HIS GLY MET ASP SER ALA THR VAL SER ASP HIS SEQRES 4 A 335 PHE GLN PRO TRP ARG HIS GLU GLY GLY HIS ALA PRO PHE SEQRES 5 A 335 SER LEU ALA TRP MET THR ALA VAL GLY GLU ARG THR SER SEQRES 6 A 335 ARG LEU GLN LEU GLY THR SER VAL MET THR PRO THR PHE SEQRES 7 A 335 ARG TYR ASN PRO ALA VAL VAL ALA GLN ALA PHE ALA THR SEQRES 8 A 335 MET GLY CYS LEU TYR PRO GLY ARG ILE MET LEU GLY VAL SEQRES 9 A 335 GLY THR GLY GLU ALA LEU ASN GLU ILE ALA THR GLY PHE SEQRES 10 A 335 ALA GLY GLU TRP PRO GLU PHE LYS GLU ARG PHE ALA ARG SEQRES 11 A 335 LEU ARG GLU ALA VAL ALA LEU MET ARG GLU LEU TRP LEU SEQRES 12 A 335 GLY ASP ARG VAL ASP PHE GLU GLY ASN TYR TYR LYS THR SEQRES 13 A 335 VAL GLY ALA SER ILE TYR ASP VAL PRO GLU GLY GLY ILE SEQRES 14 A 335 PRO VAL TYR ILE ALA ALA GLY GLY PRO VAL VAL ALA ARG SEQRES 15 A 335 TYR ALA GLY ARG SER GLY ASP GLY PHE ILE CYS THR SER SEQRES 16 A 335 GLY LYS GLY MET GLU LEU TYR THR GLU LYS LEU MET PRO SEQRES 17 A 335 ALA VAL ALA GLU GLY ALA GLU LYS ALA ASP ARG ASP VAL SEQRES 18 A 335 ALA GLU ILE ASP LYS MET ILE GLU ILE LYS ILE SER TYR SEQRES 19 A 335 ASP THR ASP PRO GLU LEU ALA LEU GLU ASN THR ARG PHE SEQRES 20 A 335 TRP ALA PRO LEU SER LEU THR PRO GLU GLN LYS HIS SER SEQRES 21 A 335 ILE ASP ASP PRO ILE GLU MET GLU ARG ALA ALA ASP ALA SEQRES 22 A 335 LEU PRO ILE GLU GLN VAL ALA LYS ARG TRP ILE VAL ALA SEQRES 23 A 335 SER ASP PRO ASP GLU ALA VAL ALA GLN ILE ARG PRO TYR SEQRES 24 A 335 LEU ASP ALA GLY LEU ASN HIS LEU VAL PHE HIS ALA PRO SEQRES 25 A 335 GLY HIS ASP GLN LYS ARG PHE LEU GLU LEU PHE GLN ARG SEQRES 26 A 335 ASP LEU ALA PRO ARG LEU ARG GLY LEU ALA SEQRES 1 B 335 MET VAL ILE LYS PHE GLY TYR LYS ALA SER ALA GLU GLN SEQRES 2 B 335 PHE GLY PRO ARG GLU LEU VAL GLU LEU GLY VAL LEU ALA SEQRES 3 B 335 GLU ALA HIS GLY MET ASP SER ALA THR VAL SER ASP HIS SEQRES 4 B 335 PHE GLN PRO TRP ARG HIS GLU GLY GLY HIS ALA PRO PHE SEQRES 5 B 335 SER LEU ALA TRP MET THR ALA VAL GLY GLU ARG THR SER SEQRES 6 B 335 ARG LEU GLN LEU GLY THR SER VAL MET THR PRO THR PHE SEQRES 7 B 335 ARG TYR ASN PRO ALA VAL VAL ALA GLN ALA PHE ALA THR SEQRES 8 B 335 MET GLY CYS LEU TYR PRO GLY ARG ILE MET LEU GLY VAL SEQRES 9 B 335 GLY THR GLY GLU ALA LEU ASN GLU ILE ALA THR GLY PHE SEQRES 10 B 335 ALA GLY GLU TRP PRO GLU PHE LYS GLU ARG PHE ALA ARG SEQRES 11 B 335 LEU ARG GLU ALA VAL ALA LEU MET ARG GLU LEU TRP LEU SEQRES 12 B 335 GLY ASP ARG VAL ASP PHE GLU GLY ASN TYR TYR LYS THR SEQRES 13 B 335 VAL GLY ALA SER ILE TYR ASP VAL PRO GLU GLY GLY ILE SEQRES 14 B 335 PRO VAL TYR ILE ALA ALA GLY GLY PRO VAL VAL ALA ARG SEQRES 15 B 335 TYR ALA GLY ARG SER GLY ASP GLY PHE ILE CYS THR SER SEQRES 16 B 335 GLY LYS GLY MET GLU LEU TYR THR GLU LYS LEU MET PRO SEQRES 17 B 335 ALA VAL ALA GLU GLY ALA GLU LYS ALA ASP ARG ASP VAL SEQRES 18 B 335 ALA GLU ILE ASP LYS MET ILE GLU ILE LYS ILE SER TYR SEQRES 19 B 335 ASP THR ASP PRO GLU LEU ALA LEU GLU ASN THR ARG PHE SEQRES 20 B 335 TRP ALA PRO LEU SER LEU THR PRO GLU GLN LYS HIS SER SEQRES 21 B 335 ILE ASP ASP PRO ILE GLU MET GLU ARG ALA ALA ASP ALA SEQRES 22 B 335 LEU PRO ILE GLU GLN VAL ALA LYS ARG TRP ILE VAL ALA SEQRES 23 B 335 SER ASP PRO ASP GLU ALA VAL ALA GLN ILE ARG PRO TYR SEQRES 24 B 335 LEU ASP ALA GLY LEU ASN HIS LEU VAL PHE HIS ALA PRO SEQRES 25 B 335 GLY HIS ASP GLN LYS ARG PHE LEU GLU LEU PHE GLN ARG SEQRES 26 B 335 ASP LEU ALA PRO ARG LEU ARG GLY LEU ALA HET GOL A 401 6 HET SO4 B 401 5 HET SO4 B 402 5 HET GOL B 403 6 HETNAM GOL GLYCEROL HETNAM SO4 SULFATE ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 GOL 2(C3 H8 O3) FORMUL 4 SO4 2(O4 S 2-) FORMUL 7 HOH *571(H2 O) HELIX 1 AA1 GLY A 15 HIS A 29 1 15 HELIX 2 AA2 PHE A 52 THR A 64 1 13 HELIX 3 AA3 ASN A 81 TYR A 96 1 16 HELIX 4 AA4 GLU A 108 THR A 115 1 8 HELIX 5 AA5 GLU A 123 GLY A 144 1 22 HELIX 6 AA6 GLY A 177 GLY A 188 1 12 HELIX 7 AA7 MET A 199 LYS A 205 1 7 HELIX 8 AA8 LYS A 205 ALA A 217 1 13 HELIX 9 AA9 ASP A 220 ILE A 224 5 5 HELIX 10 AB1 ASP A 237 ASN A 244 1 8 HELIX 11 AB2 THR A 245 LEU A 253 5 9 HELIX 12 AB3 ILE A 265 LEU A 274 1 10 HELIX 13 AB4 PRO A 275 ALA A 280 1 6 HELIX 14 AB5 ASP A 288 ALA A 302 1 15 HELIX 15 AB6 ASP A 315 LEU A 327 1 13 HELIX 16 AB7 LEU A 327 GLY A 333 1 7 HELIX 17 AB8 GLY B 15 HIS B 29 1 15 HELIX 18 AB9 TRP B 43 GLY B 47 5 5 HELIX 19 AC1 PHE B 52 THR B 64 1 13 HELIX 20 AC2 ASN B 81 TYR B 96 1 16 HELIX 21 AC3 GLU B 108 THR B 115 1 8 HELIX 22 AC4 GLU B 123 GLY B 144 1 22 HELIX 23 AC5 GLY B 177 GLY B 188 1 12 HELIX 24 AC6 GLY B 198 LYS B 205 1 8 HELIX 25 AC7 LYS B 205 ALA B 217 1 13 HELIX 26 AC8 ASP B 220 ILE B 224 5 5 HELIX 27 AC9 ASP B 237 THR B 245 1 9 HELIX 28 AD1 ARG B 246 ALA B 249 5 4 HELIX 29 AD2 ASP B 288 ALA B 302 1 15 HELIX 30 AD3 ASP B 315 GLY B 333 1 19 SHEET 1 AA110 ILE A 284 ALA A 286 0 SHEET 2 AA110 ASP A 225 TYR A 234 1 N SER A 233 O ILE A 284 SHEET 3 AA110 HIS A 306 HIS A 310 1 O VAL A 308 N ILE A 228 SHEET 4 AA110 LYS A 4 ALA A 9 1 N GLY A 6 O PHE A 309 SHEET 5 AA110 SER A 33 VAL A 36 1 O THR A 35 N ALA A 9 SHEET 6 AA110 GLN A 68 THR A 71 1 O GLN A 68 N ALA A 34 SHEET 7 AA110 ILE A 100 VAL A 104 1 O MET A 101 N LEU A 69 SHEET 8 AA110 VAL A 171 ALA A 174 1 O ALA A 174 N VAL A 104 SHEET 9 AA110 GLY A 190 THR A 194 1 O ILE A 192 N ILE A 173 SHEET 10 AA110 ASP A 225 TYR A 234 1 O GLU A 229 N CYS A 193 SHEET 1 AA2 2 VAL A 147 GLU A 150 0 SHEET 2 AA2 2 LYS A 155 ALA A 159 -1 O ALA A 159 N VAL A 147 SHEET 1 AA310 ILE B 284 ALA B 286 0 SHEET 2 AA310 ASP B 225 TYR B 234 1 N SER B 233 O ILE B 284 SHEET 3 AA310 HIS B 306 HIS B 310 1 O VAL B 308 N ILE B 228 SHEET 4 AA310 LYS B 4 ALA B 9 1 N GLY B 6 O LEU B 307 SHEET 5 AA310 SER B 33 VAL B 36 1 O THR B 35 N ALA B 9 SHEET 6 AA310 GLN B 68 THR B 71 1 O GLN B 68 N ALA B 34 SHEET 7 AA310 ILE B 100 VAL B 104 1 O MET B 101 N LEU B 69 SHEET 8 AA310 VAL B 171 ALA B 174 1 O TYR B 172 N VAL B 104 SHEET 9 AA310 GLY B 190 THR B 194 1 O GLY B 190 N ILE B 173 SHEET 10 AA310 ASP B 225 TYR B 234 1 O MET B 227 N PHE B 191 CISPEP 1 SER A 72 VAL A 73 0 -0.29 CISPEP 2 SER B 72 VAL B 73 0 -3.02 SITE 1 AC1 7 ARG A 318 GLU A 321 ARG A 325 HOH A 524 SITE 2 AC1 7 PRO B 329 ARG B 332 HOH B 544 SITE 1 AC2 9 ARG A 132 TYR A 183 ARG A 186 THR B 236 SITE 2 AC2 9 ARG B 318 ARG B 325 HOH B 522 HOH B 582 SITE 3 AC2 9 HOH B 657 SITE 1 AC3 7 THR A 236 ARG A 318 ARG A 325 GLN B 324 SITE 2 AC3 7 HOH B 502 HOH B 544 HOH B 585 SITE 1 AC4 8 LYS B 8 SER B 10 ALA B 11 GLU B 12 SITE 2 AC4 8 SER B 37 HIS B 39 HIS B 310 HOH B 511 CRYST1 81.540 88.120 88.780 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012264 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011348 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011264 0.00000 MTRIX1 1 1.000000 0.000000 0.000000 0.00000 1 MTRIX2 1 0.000000 1.000000 0.000000 0.00000 1 MTRIX3 1 0.000000 0.000000 1.000000 0.00000 1 MTRIX1 2 -0.960155 0.003353 0.279448 -48.62352 1 MTRIX2 2 0.002749 -0.999766 0.021440 -30.91676 1 MTRIX3 2 0.279455 0.021354 0.959921 7.28584 1