HEADER SIGNALING PROTEIN 21-SEP-16 5LXF TITLE CRYSTAL STRUCTURE OF THE HUMAN MACROPHAGE COLONY STIMULATING FACTOR M- TITLE 2 CSF_C31S VARIANT COMPND MOL_ID: 1; COMPND 2 MOLECULE: MACROPHAGE COLONY-STIMULATING FACTOR 1; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: MCSF,LANIMOSTIM; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CSF1; SOURCE 6 EXPRESSION_SYSTEM: KOMAGATAELLA PHAFFII GS115; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 644223 KEYWDS DRUG DESIGN, RATIONAL PROTEIN ENGINEERING, RECEPTOR TYROSINE KINASE, KEYWDS 2 OSTEOPOROSIS, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR A.SHAHAR,N.PAPO,R.ZARIVACH,M.KOSLOFF,A.BAKHMAN,L.ROSENFELD,Y.ZUR, AUTHOR 2 N.LEVAOT REVDAT 5 17-JAN-24 5LXF 1 REMARK REVDAT 4 16-OCT-19 5LXF 1 REMARK REVDAT 3 31-JAN-18 5LXF 1 REMARK REVDAT 2 02-AUG-17 5LXF 1 REVDAT 1 12-JUL-17 5LXF 0 JRNL AUTH Y.ZUR,L.ROSENFELD,A.BAKHMAN,S.ILIC,H.HAYUN,A.SHAHAR, JRNL AUTH 2 B.AKABAYOV,M.KOSLOFF,N.LEVAOT,N.PAPO JRNL TITL ENGINEERING A MONOMERIC VARIANT OF MACROPHAGE JRNL TITL 2 COLONY-STIMULATING FACTOR (M-CSF) THAT ANTAGONIZES THE C-FMS JRNL TITL 3 RECEPTOR. JRNL REF BIOCHEM. J. V. 474 2601 2017 JRNL REFN ESSN 1470-8728 JRNL PMID 28655719 JRNL DOI 10.1042/BCJ20170276 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.11.1_2575: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.66 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 85.3 REMARK 3 NUMBER OF REFLECTIONS : 20774 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.192 REMARK 3 R VALUE (WORKING SET) : 0.189 REMARK 3 FREE R VALUE : 0.253 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.940 REMARK 3 FREE R VALUE TEST SET COUNT : 1027 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 41.1451 - 3.8250 0.99 3481 176 0.1595 0.1944 REMARK 3 2 3.8250 - 3.0363 0.99 3307 170 0.1754 0.2540 REMARK 3 3 3.0363 - 2.6526 0.99 3265 180 0.2014 0.2799 REMARK 3 4 2.6526 - 2.4101 0.96 3158 150 0.2136 0.3010 REMARK 3 5 2.4101 - 2.2373 0.89 2863 151 0.2361 0.3691 REMARK 3 6 2.2373 - 2.1054 0.70 2256 119 0.2436 0.2625 REMARK 3 7 2.1054 - 2.0000 0.44 1417 81 0.2305 0.3310 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.240 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.160 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 2491 REMARK 3 ANGLE : 1.176 3367 REMARK 3 CHIRALITY : 0.062 375 REMARK 3 PLANARITY : 0.006 437 REMARK 3 DIHEDRAL : 7.073 2147 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 14 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 2 THROUGH 25 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.4147 -16.6268 11.9395 REMARK 3 T TENSOR REMARK 3 T11: 0.1110 T22: 0.1488 REMARK 3 T33: 0.2088 T12: -0.0412 REMARK 3 T13: 0.0224 T23: -0.0236 REMARK 3 L TENSOR REMARK 3 L11: 1.0405 L22: 2.3229 REMARK 3 L33: 5.0759 L12: 0.1210 REMARK 3 L13: 0.4202 L23: 3.4247 REMARK 3 S TENSOR REMARK 3 S11: 0.1744 S12: 0.0185 S13: -0.2639 REMARK 3 S21: 0.4429 S22: 0.1031 S23: -0.1508 REMARK 3 S31: 0.8822 S32: -0.1941 S33: -0.1198 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 26 THROUGH 38 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.3238 1.3201 25.5752 REMARK 3 T TENSOR REMARK 3 T11: 0.6325 T22: 0.1349 REMARK 3 T33: 0.2690 T12: -0.0153 REMARK 3 T13: -0.0849 T23: -0.0190 REMARK 3 L TENSOR REMARK 3 L11: 0.4681 L22: 0.5141 REMARK 3 L33: 0.0644 L12: -0.4931 REMARK 3 L13: 0.1754 L23: -0.1874 REMARK 3 S TENSOR REMARK 3 S11: -0.3831 S12: -0.0589 S13: 0.1716 REMARK 3 S21: 0.2277 S22: 0.0391 S23: -0.1091 REMARK 3 S31: -0.7792 S32: 0.1686 S33: -0.1609 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 39 THROUGH 45 ) REMARK 3 ORIGIN FOR THE GROUP (A): -17.4672 3.6805 10.5941 REMARK 3 T TENSOR REMARK 3 T11: 0.6650 T22: 0.6894 REMARK 3 T33: 0.5359 T12: 0.0589 REMARK 3 T13: 0.0353 T23: -0.3056 REMARK 3 L TENSOR REMARK 3 L11: 2.6573 L22: 4.5299 REMARK 3 L33: 5.2716 L12: -1.6680 REMARK 3 L13: 1.3216 L23: 3.1584 REMARK 3 S TENSOR REMARK 3 S11: 0.3013 S12: -0.6149 S13: 0.4248 REMARK 3 S21: 1.3899 S22: -0.3982 S23: 0.9586 REMARK 3 S31: -0.6026 S32: -0.7387 S33: 0.1702 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 46 THROUGH 71 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.9362 -3.9887 13.6565 REMARK 3 T TENSOR REMARK 3 T11: 0.2946 T22: 0.2341 REMARK 3 T33: 0.2272 T12: -0.0995 REMARK 3 T13: 0.0257 T23: -0.0596 REMARK 3 L TENSOR REMARK 3 L11: 3.9821 L22: 2.0193 REMARK 3 L33: 5.1636 L12: -1.2714 REMARK 3 L13: 1.8629 L23: -0.0291 REMARK 3 S TENSOR REMARK 3 S11: -0.4561 S12: 0.1945 S13: 0.0795 REMARK 3 S21: 0.1428 S22: 0.3269 S23: -0.2063 REMARK 3 S31: -0.9281 S32: 0.7163 S33: 0.1767 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 72 THROUGH 90 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.9602 -12.1591 11.2943 REMARK 3 T TENSOR REMARK 3 T11: 0.0260 T22: 0.3281 REMARK 3 T33: 0.2490 T12: -0.0566 REMARK 3 T13: 0.0325 T23: -0.1492 REMARK 3 L TENSOR REMARK 3 L11: 0.8482 L22: 0.1056 REMARK 3 L33: 1.0278 L12: 0.2338 REMARK 3 L13: -0.2816 L23: 0.1296 REMARK 3 S TENSOR REMARK 3 S11: 0.0639 S12: 0.1140 S13: -0.0201 REMARK 3 S21: 0.0143 S22: 0.1864 S23: -0.0382 REMARK 3 S31: -0.0421 S32: 0.3908 S33: 0.1317 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 91 THROUGH 102 ) REMARK 3 ORIGIN FOR THE GROUP (A): -6.7711 3.6343 0.0327 REMARK 3 T TENSOR REMARK 3 T11: 0.8664 T22: 0.4110 REMARK 3 T33: 0.5167 T12: -0.1206 REMARK 3 T13: -0.0680 T23: 0.1140 REMARK 3 L TENSOR REMARK 3 L11: 4.1265 L22: 0.2279 REMARK 3 L33: 1.0770 L12: 0.0572 REMARK 3 L13: -0.9254 L23: 0.4331 REMARK 3 S TENSOR REMARK 3 S11: -0.2006 S12: 0.8357 S13: 1.2021 REMARK 3 S21: -0.8986 S22: -0.0064 S23: -0.9837 REMARK 3 S31: -1.6963 S32: 0.1036 S33: 0.0153 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 103 THROUGH 147 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.3795 -3.9614 10.5809 REMARK 3 T TENSOR REMARK 3 T11: 0.2522 T22: 0.2184 REMARK 3 T33: 0.2593 T12: 0.0382 REMARK 3 T13: -0.0330 T23: -0.0429 REMARK 3 L TENSOR REMARK 3 L11: 0.4894 L22: 1.9011 REMARK 3 L33: 4.2973 L12: 0.2827 REMARK 3 L13: 0.5129 L23: 0.9144 REMARK 3 S TENSOR REMARK 3 S11: -0.1169 S12: 0.0491 S13: 0.2202 REMARK 3 S21: 0.0033 S22: -0.1922 S23: 0.2522 REMARK 3 S31: -1.0163 S32: -0.3893 S33: 0.0977 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 2 THROUGH 24 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.3604 -16.3316 46.9336 REMARK 3 T TENSOR REMARK 3 T11: 0.5925 T22: 0.2630 REMARK 3 T33: 0.3664 T12: 0.1519 REMARK 3 T13: -0.1124 T23: -0.0478 REMARK 3 L TENSOR REMARK 3 L11: 2.5617 L22: 1.5734 REMARK 3 L33: 6.5614 L12: 0.3521 REMARK 3 L13: 0.6733 L23: -2.6418 REMARK 3 S TENSOR REMARK 3 S11: 0.1983 S12: 0.0024 S13: -0.4859 REMARK 3 S21: 0.5571 S22: -0.0031 S23: -0.3316 REMARK 3 S31: 0.6935 S32: 0.7075 S33: 0.0105 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 25 THROUGH 31 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.9015 -1.6754 28.2453 REMARK 3 T TENSOR REMARK 3 T11: 0.4733 T22: 0.4757 REMARK 3 T33: 0.1843 T12: -0.1581 REMARK 3 T13: -0.0317 T23: -0.0218 REMARK 3 L TENSOR REMARK 3 L11: 7.2825 L22: 2.4663 REMARK 3 L33: 9.2043 L12: -2.1131 REMARK 3 L13: 0.0895 L23: 3.7910 REMARK 3 S TENSOR REMARK 3 S11: -0.4160 S12: 0.5701 S13: 0.7987 REMARK 3 S21: -0.4263 S22: 0.3654 S23: -0.3587 REMARK 3 S31: -1.6549 S32: 0.6956 S33: 0.0054 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 32 THROUGH 45 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.9393 5.6248 46.9958 REMARK 3 T TENSOR REMARK 3 T11: 0.2944 T22: 0.0943 REMARK 3 T33: 0.2891 T12: 0.0786 REMARK 3 T13: -0.0258 T23: -0.0358 REMARK 3 L TENSOR REMARK 3 L11: 1.7670 L22: 1.7544 REMARK 3 L33: 3.6801 L12: -0.6993 REMARK 3 L13: 0.6961 L23: -0.2288 REMARK 3 S TENSOR REMARK 3 S11: -0.1074 S12: -0.0886 S13: 0.3450 REMARK 3 S21: 0.0245 S22: -0.0841 S23: -0.2918 REMARK 3 S31: -0.0704 S32: 0.2064 S33: 0.0377 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 46 THROUGH 63 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.7948 -3.5577 51.2563 REMARK 3 T TENSOR REMARK 3 T11: 0.3999 T22: 0.1286 REMARK 3 T33: 0.2817 T12: 0.0557 REMARK 3 T13: -0.0278 T23: -0.0265 REMARK 3 L TENSOR REMARK 3 L11: 3.8500 L22: 1.0914 REMARK 3 L33: 4.5119 L12: -0.0776 REMARK 3 L13: 2.9641 L23: 1.1670 REMARK 3 S TENSOR REMARK 3 S11: 0.1980 S12: -0.2758 S13: -0.0422 REMARK 3 S21: 0.5636 S22: -0.0328 S23: -0.2143 REMARK 3 S31: 0.4998 S32: -0.1249 S33: -0.1200 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 64 THROUGH 71 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.3914 -10.8305 37.4545 REMARK 3 T TENSOR REMARK 3 T11: 0.2683 T22: 0.1597 REMARK 3 T33: 0.2018 T12: 0.0508 REMARK 3 T13: -0.0033 T23: -0.0271 REMARK 3 L TENSOR REMARK 3 L11: 5.2628 L22: 1.2606 REMARK 3 L33: 3.2614 L12: 1.9443 REMARK 3 L13: -0.9747 L23: 0.4703 REMARK 3 S TENSOR REMARK 3 S11: -0.0784 S12: -0.1491 S13: 0.2930 REMARK 3 S21: 0.0732 S22: -0.0780 S23: 0.2810 REMARK 3 S31: -0.0475 S32: -0.4786 S33: 0.2170 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 72 THROUGH 90 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.9690 -15.1080 47.8893 REMARK 3 T TENSOR REMARK 3 T11: 0.5125 T22: 0.1012 REMARK 3 T33: 0.2671 T12: 0.0266 REMARK 3 T13: -0.0384 T23: -0.0084 REMARK 3 L TENSOR REMARK 3 L11: 1.7246 L22: 1.1050 REMARK 3 L33: 2.8972 L12: -0.8198 REMARK 3 L13: 0.5665 L23: -1.6603 REMARK 3 S TENSOR REMARK 3 S11: 0.0857 S12: -0.0876 S13: -0.1182 REMARK 3 S21: 0.8509 S22: 0.0273 S23: -0.1756 REMARK 3 S31: 0.0893 S32: -0.0747 S33: 0.0918 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 91 THROUGH 150 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.3242 -1.4120 52.8353 REMARK 3 T TENSOR REMARK 3 T11: 0.4351 T22: 0.1897 REMARK 3 T33: 0.2562 T12: 0.0859 REMARK 3 T13: -0.0919 T23: -0.0421 REMARK 3 L TENSOR REMARK 3 L11: 1.1319 L22: 2.0783 REMARK 3 L33: 1.2943 L12: 0.2587 REMARK 3 L13: 0.7993 L23: 0.0660 REMARK 3 S TENSOR REMARK 3 S11: -0.0063 S12: -0.1009 S13: -0.0065 REMARK 3 S21: 0.6246 S22: 0.1375 S23: -0.2638 REMARK 3 S31: 0.2270 S32: 0.2204 S33: -0.0054 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5LXF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 21-SEP-16. REMARK 100 THE DEPOSITION ID IS D_1200001524. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JUL-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM14 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20774 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 39.660 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.1 REMARK 200 DATA REDUNDANCY : 8.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 26.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.03 REMARK 200 COMPLETENESS FOR SHELL (%) : 85.7 REMARK 200 DATA REDUNDANCY IN SHELL : 8.20 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3UF2 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 34.54 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.88 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.03M BIS-TRIS PH 6.5; 0.17M MG REMARK 280 FORMATE; 16.67% PEG 3350; 0.07M BIS-TRIS PH 5.5, PH 5.8, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 16.63550 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 79.31600 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 32.73550 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 79.31600 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 16.63550 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 32.73550 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1710 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15000 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -9.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 TYR A -11 REMARK 465 VAL A -10 REMARK 465 ASP A -9 REMARK 465 TYR A -8 REMARK 465 LYS A -7 REMARK 465 ASP A -6 REMARK 465 ASP A -5 REMARK 465 ASP A -4 REMARK 465 ASP A -3 REMARK 465 LYS A -2 REMARK 465 GLU A -1 REMARK 465 PHE A 0 REMARK 465 GLU A 1 REMARK 465 SER A 148 REMARK 465 GLN A 149 REMARK 465 GLY A 150 REMARK 465 HIS A 151 REMARK 465 GLU A 152 REMARK 465 ARG A 153 REMARK 465 GLN A 154 REMARK 465 SER A 155 REMARK 465 GLU A 156 REMARK 465 GLY A 157 REMARK 465 SER A 158 REMARK 465 PRO A 159 REMARK 465 ARG A 160 REMARK 465 HIS A 161 REMARK 465 HIS A 162 REMARK 465 HIS A 163 REMARK 465 HIS A 164 REMARK 465 HIS A 165 REMARK 465 HIS A 166 REMARK 465 ALA A 167 REMARK 465 ALA A 168 REMARK 465 ALA A 169 REMARK 465 ASN A 170 REMARK 465 TYR B -11 REMARK 465 VAL B -10 REMARK 465 ASP B -9 REMARK 465 TYR B -8 REMARK 465 LYS B -7 REMARK 465 ASP B -6 REMARK 465 ASP B -5 REMARK 465 ASP B -4 REMARK 465 ASP B -3 REMARK 465 LYS B -2 REMARK 465 GLU B -1 REMARK 465 PHE B 0 REMARK 465 GLU B 1 REMARK 465 HIS B 151 REMARK 465 GLU B 152 REMARK 465 ARG B 153 REMARK 465 GLN B 154 REMARK 465 SER B 155 REMARK 465 GLU B 156 REMARK 465 GLY B 157 REMARK 465 SER B 158 REMARK 465 PRO B 159 REMARK 465 ARG B 160 REMARK 465 HIS B 161 REMARK 465 HIS B 162 REMARK 465 HIS B 163 REMARK 465 HIS B 164 REMARK 465 HIS B 165 REMARK 465 HIS B 166 REMARK 465 ALA B 167 REMARK 465 ALA B 168 REMARK 465 ALA B 169 REMARK 465 ASN B 170 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP A 24 O HOH A 201 1.99 REMARK 500 O HOH A 301 O HOH A 322 2.00 REMARK 500 O HOH B 253 O HOH B 318 2.09 REMARK 500 OE2 GLU B 97 O HOH B 201 2.09 REMARK 500 O HOH B 204 O HOH B 211 2.12 REMARK 500 O HOH B 287 O HOH B 332 2.15 REMARK 500 O HOH B 203 O HOH B 313 2.16 REMARK 500 O HOH B 215 O HOH B 319 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLU A 97 CB - CA - C ANGL. DEV. = -12.4 DEGREES REMARK 500 ARG B 68 CG - CD - NE ANGL. DEV. = -26.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 97 -62.51 4.22 REMARK 500 ASP B 131 106.61 -161.42 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLU A 96 GLU A 97 141.97 REMARK 500 REMARK 500 REMARK: NULL DBREF 5LXF A 1 158 UNP P09603 CSF1_HUMAN 33 190 DBREF 5LXF B 1 158 UNP P09603 CSF1_HUMAN 33 190 SEQADV 5LXF TYR A -11 UNP P09603 EXPRESSION TAG SEQADV 5LXF VAL A -10 UNP P09603 EXPRESSION TAG SEQADV 5LXF ASP A -9 UNP P09603 EXPRESSION TAG SEQADV 5LXF TYR A -8 UNP P09603 EXPRESSION TAG SEQADV 5LXF LYS A -7 UNP P09603 EXPRESSION TAG SEQADV 5LXF ASP A -6 UNP P09603 EXPRESSION TAG SEQADV 5LXF ASP A -5 UNP P09603 EXPRESSION TAG SEQADV 5LXF ASP A -4 UNP P09603 EXPRESSION TAG SEQADV 5LXF ASP A -3 UNP P09603 EXPRESSION TAG SEQADV 5LXF LYS A -2 UNP P09603 EXPRESSION TAG SEQADV 5LXF GLU A -1 UNP P09603 EXPRESSION TAG SEQADV 5LXF PHE A 0 UNP P09603 EXPRESSION TAG SEQADV 5LXF SER A 31 UNP P09603 CYS 63 ENGINEERED MUTATION SEQADV 5LXF PRO A 159 UNP P09603 EXPRESSION TAG SEQADV 5LXF ARG A 160 UNP P09603 EXPRESSION TAG SEQADV 5LXF HIS A 161 UNP P09603 EXPRESSION TAG SEQADV 5LXF HIS A 162 UNP P09603 EXPRESSION TAG SEQADV 5LXF HIS A 163 UNP P09603 EXPRESSION TAG SEQADV 5LXF HIS A 164 UNP P09603 EXPRESSION TAG SEQADV 5LXF HIS A 165 UNP P09603 EXPRESSION TAG SEQADV 5LXF HIS A 166 UNP P09603 EXPRESSION TAG SEQADV 5LXF ALA A 167 UNP P09603 EXPRESSION TAG SEQADV 5LXF ALA A 168 UNP P09603 EXPRESSION TAG SEQADV 5LXF ALA A 169 UNP P09603 EXPRESSION TAG SEQADV 5LXF ASN A 170 UNP P09603 EXPRESSION TAG SEQADV 5LXF TYR B -11 UNP P09603 EXPRESSION TAG SEQADV 5LXF VAL B -10 UNP P09603 EXPRESSION TAG SEQADV 5LXF ASP B -9 UNP P09603 EXPRESSION TAG SEQADV 5LXF TYR B -8 UNP P09603 EXPRESSION TAG SEQADV 5LXF LYS B -7 UNP P09603 EXPRESSION TAG SEQADV 5LXF ASP B -6 UNP P09603 EXPRESSION TAG SEQADV 5LXF ASP B -5 UNP P09603 EXPRESSION TAG SEQADV 5LXF ASP B -4 UNP P09603 EXPRESSION TAG SEQADV 5LXF ASP B -3 UNP P09603 EXPRESSION TAG SEQADV 5LXF LYS B -2 UNP P09603 EXPRESSION TAG SEQADV 5LXF GLU B -1 UNP P09603 EXPRESSION TAG SEQADV 5LXF PHE B 0 UNP P09603 EXPRESSION TAG SEQADV 5LXF SER B 31 UNP P09603 CYS 63 ENGINEERED MUTATION SEQADV 5LXF PRO B 159 UNP P09603 EXPRESSION TAG SEQADV 5LXF ARG B 160 UNP P09603 EXPRESSION TAG SEQADV 5LXF HIS B 161 UNP P09603 EXPRESSION TAG SEQADV 5LXF HIS B 162 UNP P09603 EXPRESSION TAG SEQADV 5LXF HIS B 163 UNP P09603 EXPRESSION TAG SEQADV 5LXF HIS B 164 UNP P09603 EXPRESSION TAG SEQADV 5LXF HIS B 165 UNP P09603 EXPRESSION TAG SEQADV 5LXF HIS B 166 UNP P09603 EXPRESSION TAG SEQADV 5LXF ALA B 167 UNP P09603 EXPRESSION TAG SEQADV 5LXF ALA B 168 UNP P09603 EXPRESSION TAG SEQADV 5LXF ALA B 169 UNP P09603 EXPRESSION TAG SEQADV 5LXF ASN B 170 UNP P09603 EXPRESSION TAG SEQRES 1 A 182 TYR VAL ASP TYR LYS ASP ASP ASP ASP LYS GLU PHE GLU SEQRES 2 A 182 GLU VAL SER GLU TYR CYS SER HIS MET ILE GLY SER GLY SEQRES 3 A 182 HIS LEU GLN SER LEU GLN ARG LEU ILE ASP SER GLN MET SEQRES 4 A 182 GLU THR SER SER GLN ILE THR PHE GLU PHE VAL ASP GLN SEQRES 5 A 182 GLU GLN LEU LYS ASP PRO VAL CYS TYR LEU LYS LYS ALA SEQRES 6 A 182 PHE LEU LEU VAL GLN ASP ILE MET GLU ASP THR MET ARG SEQRES 7 A 182 PHE ARG ASP ASN THR PRO ASN ALA ILE ALA ILE VAL GLN SEQRES 8 A 182 LEU GLN GLU LEU SER LEU ARG LEU LYS SER CYS PHE THR SEQRES 9 A 182 LYS ASP TYR GLU GLU HIS ASP LYS ALA CYS VAL ARG THR SEQRES 10 A 182 PHE TYR GLU THR PRO LEU GLN LEU LEU GLU LYS VAL LYS SEQRES 11 A 182 ASN VAL PHE ASN GLU THR LYS ASN LEU LEU ASP LYS ASP SEQRES 12 A 182 TRP ASN ILE PHE SER LYS ASN CYS ASN ASN SER PHE ALA SEQRES 13 A 182 GLU CYS SER SER GLN GLY HIS GLU ARG GLN SER GLU GLY SEQRES 14 A 182 SER PRO ARG HIS HIS HIS HIS HIS HIS ALA ALA ALA ASN SEQRES 1 B 182 TYR VAL ASP TYR LYS ASP ASP ASP ASP LYS GLU PHE GLU SEQRES 2 B 182 GLU VAL SER GLU TYR CYS SER HIS MET ILE GLY SER GLY SEQRES 3 B 182 HIS LEU GLN SER LEU GLN ARG LEU ILE ASP SER GLN MET SEQRES 4 B 182 GLU THR SER SER GLN ILE THR PHE GLU PHE VAL ASP GLN SEQRES 5 B 182 GLU GLN LEU LYS ASP PRO VAL CYS TYR LEU LYS LYS ALA SEQRES 6 B 182 PHE LEU LEU VAL GLN ASP ILE MET GLU ASP THR MET ARG SEQRES 7 B 182 PHE ARG ASP ASN THR PRO ASN ALA ILE ALA ILE VAL GLN SEQRES 8 B 182 LEU GLN GLU LEU SER LEU ARG LEU LYS SER CYS PHE THR SEQRES 9 B 182 LYS ASP TYR GLU GLU HIS ASP LYS ALA CYS VAL ARG THR SEQRES 10 B 182 PHE TYR GLU THR PRO LEU GLN LEU LEU GLU LYS VAL LYS SEQRES 11 B 182 ASN VAL PHE ASN GLU THR LYS ASN LEU LEU ASP LYS ASP SEQRES 12 B 182 TRP ASN ILE PHE SER LYS ASN CYS ASN ASN SER PHE ALA SEQRES 13 B 182 GLU CYS SER SER GLN GLY HIS GLU ARG GLN SER GLU GLY SEQRES 14 B 182 SER PRO ARG HIS HIS HIS HIS HIS HIS ALA ALA ALA ASN FORMUL 3 HOH *261(H2 O) HELIX 1 AA1 SER A 4 MET A 10 5 7 HELIX 2 AA2 GLY A 12 SER A 25 1 14 HELIX 3 AA3 ASP A 45 THR A 64 1 20 HELIX 4 AA4 THR A 71 LYS A 88 1 18 HELIX 5 AA5 SER A 89 PHE A 91 5 3 HELIX 6 AA6 TYR A 95 ASP A 99 5 5 HELIX 7 AA7 THR A 109 ASP A 131 1 23 HELIX 8 AA8 ASN A 133 LYS A 137 5 5 HELIX 9 AA9 CYS A 139 GLU A 145 1 7 HELIX 10 AB1 SER B 4 SER B 8 5 5 HELIX 11 AB2 GLY B 12 SER B 25 1 14 HELIX 12 AB3 ASP B 45 THR B 64 1 20 HELIX 13 AB4 THR B 71 LEU B 87 1 17 HELIX 14 AB5 LYS B 88 PHE B 91 5 4 HELIX 15 AB6 TYR B 95 ASP B 99 5 5 HELIX 16 AB7 THR B 109 ASP B 131 1 23 HELIX 17 AB8 ASN B 133 LYS B 137 5 5 HELIX 18 AB9 CYS B 139 GLU B 145 1 7 SHEET 1 AA1 2 ILE A 33 VAL A 38 0 SHEET 2 AA1 2 VAL A 103 GLU A 108 -1 O PHE A 106 N PHE A 35 SHEET 1 AA2 2 ILE B 33 VAL B 38 0 SHEET 2 AA2 2 VAL B 103 GLU B 108 -1 O PHE B 106 N PHE B 35 SSBOND 1 CYS A 7 CYS A 90 1555 1555 2.04 SSBOND 2 CYS A 48 CYS A 139 1555 1555 2.05 SSBOND 3 CYS A 102 CYS A 146 1555 1555 2.03 SSBOND 4 CYS B 7 CYS B 90 1555 1555 2.09 SSBOND 5 CYS B 48 CYS B 139 1555 1555 2.08 SSBOND 6 CYS B 102 CYS B 146 1555 1555 2.07 CRYST1 33.271 65.471 158.632 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.030056 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015274 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006304 0.00000