data_5LXU # _entry.id 5LXU # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.398 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 5LXU pdb_00005lxu 10.2210/pdb5lxu/pdb WWPDB D_1200001540 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2017-10-25 2 'Structure model' 1 1 2024-11-06 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' 3 2 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' chem_comp_atom 2 2 'Structure model' chem_comp_bond 3 2 'Structure model' database_2 4 2 'Structure model' pdbx_entry_details 5 2 'Structure model' pdbx_modification_feature # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_database_2.pdbx_DOI' 2 2 'Structure model' '_database_2.pdbx_database_accession' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 5LXU _pdbx_database_status.recvd_initial_deposition_date 2016-09-22 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Zubieta, C.' 1 'Nanao, M.H.' 2 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country ? _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'To Be Published' _citation.journal_id_ASTM ? _citation.journal_id_CSD 0353 _citation.journal_id_ISSN ? _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume ? _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title 'Structure of the DNA-binding domain of LUX ARRHYTHMO' _citation.year ? _citation.database_id_CSD ? _citation.pdbx_database_id_DOI ? _citation.pdbx_database_id_PubMed ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Zubieta, C.' 1 ? primary 'Silva, C.S.' 2 ? primary 'Lai, X.' 3 ? primary 'Wigge, P.' 4 ? primary 'Nanao, M.H.' 5 ? primary 'Nayak, A.' 6 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Transcription factor LUX' 6814.810 1 ? ? ? ? 2 polymer syn ;DNA (5'-D(*AP*TP*GP*CP*GP*TP*AP*TP*CP*TP*TP*AP*GP*AP*TP*AP*CP*GP*CP*A)-3') ; 3035.003 1 ? ? ? ? 3 polymer syn ;DNA (5'-D(*AP*TP*GP*CP*GP*TP*AP*TP*CP*TP*TP*AP*GP*AP*TP*AP*CP*GP*CP*A)-3') ; 3053.031 1 ? ? ? ? 4 water nat water 18.015 93 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Protein LUX ARRHYTHMO,Protein PHYTOCLOCK 1' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no yes 'RPRLVWTPQLHKRFVDVVAHLGIKNAVPKTI(MSE)QL(MSE)NVEGLTRENVASHLQKYRLYLK' RPRLVWTPQLHKRFVDVVAHLGIKNAVPKTIMQLMNVEGLTRENVASHLQKYRLYLK A ? 2 polydeoxyribonucleotide no no '(DA)(DT)(DG)(DC)(DG)(DT)(DA)(DT)(DC)(DT)' ATGCGTATCT U ? 3 polydeoxyribonucleotide no no '(DT)(DA)(DG)(DA)(DT)(DA)(DC)(DG)(DC)(DA)' TAGATACGCA B ? # _pdbx_entity_nonpoly.entity_id 4 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ARG n 1 2 PRO n 1 3 ARG n 1 4 LEU n 1 5 VAL n 1 6 TRP n 1 7 THR n 1 8 PRO n 1 9 GLN n 1 10 LEU n 1 11 HIS n 1 12 LYS n 1 13 ARG n 1 14 PHE n 1 15 VAL n 1 16 ASP n 1 17 VAL n 1 18 VAL n 1 19 ALA n 1 20 HIS n 1 21 LEU n 1 22 GLY n 1 23 ILE n 1 24 LYS n 1 25 ASN n 1 26 ALA n 1 27 VAL n 1 28 PRO n 1 29 LYS n 1 30 THR n 1 31 ILE n 1 32 MSE n 1 33 GLN n 1 34 LEU n 1 35 MSE n 1 36 ASN n 1 37 VAL n 1 38 GLU n 1 39 GLY n 1 40 LEU n 1 41 THR n 1 42 ARG n 1 43 GLU n 1 44 ASN n 1 45 VAL n 1 46 ALA n 1 47 SER n 1 48 HIS n 1 49 LEU n 1 50 GLN n 1 51 LYS n 1 52 TYR n 1 53 ARG n 1 54 LEU n 1 55 TYR n 1 56 LEU n 1 57 LYS n 2 1 DA n 2 2 DT n 2 3 DG n 2 4 DC n 2 5 DG n 2 6 DT n 2 7 DA n 2 8 DT n 2 9 DC n 2 10 DT n 3 1 DT n 3 2 DA n 3 3 DG n 3 4 DA n 3 5 DT n 3 6 DA n 3 7 DC n 3 8 DG n 3 9 DC n 3 10 DA n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 57 _entity_src_gen.gene_src_common_name 'thale cress' _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'LUX, PCL1, At3g46640, F12A12.160' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Arabidopsis thaliana' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 3702 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _pdbx_entity_src_syn.entity_id _pdbx_entity_src_syn.pdbx_src_id _pdbx_entity_src_syn.pdbx_alt_source_flag _pdbx_entity_src_syn.pdbx_beg_seq_num _pdbx_entity_src_syn.pdbx_end_seq_num _pdbx_entity_src_syn.organism_scientific _pdbx_entity_src_syn.organism_common_name _pdbx_entity_src_syn.ncbi_taxonomy_id _pdbx_entity_src_syn.details 2 1 sample 1 20 'Arabidopsis thaliana' 'thale cress' 3702 ? 3 1 sample 1 20 'Arabidopsis thaliana' 'thale cress' 3702 ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ARG 1 144 144 ARG ARG A . n A 1 2 PRO 2 145 145 PRO PRO A . n A 1 3 ARG 3 146 146 ARG ARG A . n A 1 4 LEU 4 147 147 LEU LEU A . n A 1 5 VAL 5 148 148 VAL VAL A . n A 1 6 TRP 6 149 149 TRP TRP A . n A 1 7 THR 7 150 150 THR THR A . n A 1 8 PRO 8 151 151 PRO PRO A . n A 1 9 GLN 9 152 152 GLN GLN A . n A 1 10 LEU 10 153 153 LEU LEU A . n A 1 11 HIS 11 154 154 HIS HIS A . n A 1 12 LYS 12 155 155 LYS LYS A . n A 1 13 ARG 13 156 156 ARG ARG A . n A 1 14 PHE 14 157 157 PHE PHE A . n A 1 15 VAL 15 158 158 VAL VAL A . n A 1 16 ASP 16 159 159 ASP ASP A . n A 1 17 VAL 17 160 160 VAL VAL A . n A 1 18 VAL 18 161 161 VAL VAL A . n A 1 19 ALA 19 162 162 ALA ALA A . n A 1 20 HIS 20 163 163 HIS HIS A . n A 1 21 LEU 21 164 164 LEU LEU A . n A 1 22 GLY 22 165 165 GLY GLY A . n A 1 23 ILE 23 166 166 ILE ILE A . n A 1 24 LYS 24 167 167 LYS LYS A . n A 1 25 ASN 25 168 168 ASN ASN A . n A 1 26 ALA 26 169 169 ALA ALA A . n A 1 27 VAL 27 170 170 VAL VAL A . n A 1 28 PRO 28 171 171 PRO PRO A . n A 1 29 LYS 29 172 172 LYS LYS A . n A 1 30 THR 30 173 173 THR THR A . n A 1 31 ILE 31 174 174 ILE ILE A . n A 1 32 MSE 32 175 175 MSE MSE A . n A 1 33 GLN 33 176 176 GLN GLN A . n A 1 34 LEU 34 177 177 LEU LEU A . n A 1 35 MSE 35 178 178 MSE MSE A . n A 1 36 ASN 36 179 179 ASN ASN A . n A 1 37 VAL 37 180 180 VAL VAL A . n A 1 38 GLU 38 181 181 GLU GLU A . n A 1 39 GLY 39 182 182 GLY GLY A . n A 1 40 LEU 40 183 183 LEU LEU A . n A 1 41 THR 41 184 184 THR THR A . n A 1 42 ARG 42 185 185 ARG ARG A . n A 1 43 GLU 43 186 186 GLU GLU A . n A 1 44 ASN 44 187 187 ASN ASN A . n A 1 45 VAL 45 188 188 VAL VAL A . n A 1 46 ALA 46 189 189 ALA ALA A . n A 1 47 SER 47 190 190 SER SER A . n A 1 48 HIS 48 191 191 HIS HIS A . n A 1 49 LEU 49 192 192 LEU LEU A . n A 1 50 GLN 50 193 193 GLN GLN A . n A 1 51 LYS 51 194 194 LYS LYS A . n A 1 52 TYR 52 195 195 TYR TYR A . n A 1 53 ARG 53 196 196 ARG ARG A . n A 1 54 LEU 54 197 197 LEU LEU A . n A 1 55 TYR 55 198 198 TYR TYR A . n A 1 56 LEU 56 199 199 LEU LEU A . n A 1 57 LYS 57 200 200 LYS LYS A . n B 2 1 DA 1 1 1 DA DA U . n B 2 2 DT 2 2 2 DT DT U . n B 2 3 DG 3 3 3 DG DG U . n B 2 4 DC 4 4 4 DC DC U . n B 2 5 DG 5 5 5 DG DG U . n B 2 6 DT 6 6 6 DT DT U . n B 2 7 DA 7 7 7 DA DA U . n B 2 8 DT 8 8 8 DT DT U . n B 2 9 DC 9 9 9 DC DC U . n B 2 10 DT 10 10 10 DT DT U . n C 3 1 DT 1 20 20 DT DT B . n C 3 2 DA 2 21 21 DA DA B . n C 3 3 DG 3 22 22 DG DG B . n C 3 4 DA 4 23 23 DA DA B . n C 3 5 DT 5 24 24 DT DT B . n C 3 6 DA 6 25 25 DA DA B . n C 3 7 DC 7 26 26 DC DC B . n C 3 8 DG 8 27 27 DG DG B . n C 3 9 DC 9 28 28 DC DC B . n C 3 10 DA 10 29 29 DA DA B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 HOH 1 301 15 HOH HOH A . D 4 HOH 2 302 1 HOH HOH A . D 4 HOH 3 303 14 HOH HOH A . D 4 HOH 4 304 22 HOH HOH A . D 4 HOH 5 305 62 HOH HOH A . D 4 HOH 6 306 8 HOH HOH A . D 4 HOH 7 307 8 HOH HOH A . D 4 HOH 8 308 20 HOH HOH A . D 4 HOH 9 309 75 HOH HOH A . D 4 HOH 10 310 37 HOH HOH A . D 4 HOH 11 311 32 HOH HOH A . D 4 HOH 12 312 46 HOH HOH A . D 4 HOH 13 313 70 HOH HOH A . D 4 HOH 14 314 40 HOH HOH A . D 4 HOH 15 315 6 HOH HOH A . D 4 HOH 16 316 20 HOH HOH A . D 4 HOH 17 317 45 HOH HOH A . D 4 HOH 18 318 63 HOH HOH A . D 4 HOH 19 319 66 HOH HOH A . D 4 HOH 20 320 58 HOH HOH A . D 4 HOH 21 321 12 HOH HOH A . D 4 HOH 22 322 29 HOH HOH A . D 4 HOH 23 323 25 HOH HOH A . D 4 HOH 24 324 21 HOH HOH A . D 4 HOH 25 325 17 HOH HOH A . D 4 HOH 26 326 24 HOH HOH A . D 4 HOH 27 327 9 HOH HOH A . D 4 HOH 28 328 26 HOH HOH A . D 4 HOH 29 329 28 HOH HOH A . D 4 HOH 30 330 69 HOH HOH A . D 4 HOH 31 331 31 HOH HOH A . D 4 HOH 32 332 1 HOH HOH A . D 4 HOH 33 333 67 HOH HOH A . D 4 HOH 34 334 81 HOH HOH A . D 4 HOH 35 335 18 HOH HOH A . D 4 HOH 36 336 59 HOH HOH A . D 4 HOH 37 337 56 HOH HOH A . D 4 HOH 38 338 87 HOH HOH A . D 4 HOH 39 339 39 HOH HOH A . D 4 HOH 40 340 34 HOH HOH A . D 4 HOH 41 341 65 HOH HOH A . D 4 HOH 42 342 86 HOH HOH A . D 4 HOH 43 343 3 HOH HOH A . D 4 HOH 44 344 54 HOH HOH A . D 4 HOH 45 345 43 HOH HOH A . D 4 HOH 46 346 83 HOH HOH A . D 4 HOH 47 347 9 HOH HOH A . D 4 HOH 48 348 72 HOH HOH A . D 4 HOH 49 349 27 HOH HOH A . D 4 HOH 50 350 57 HOH HOH A . D 4 HOH 51 351 13 HOH HOH A . D 4 HOH 52 352 36 HOH HOH A . E 4 HOH 1 101 7 HOH HOH U . E 4 HOH 2 102 16 HOH HOH U . E 4 HOH 3 103 76 HOH HOH U . E 4 HOH 4 104 23 HOH HOH U . E 4 HOH 5 105 13 HOH HOH U . E 4 HOH 6 106 73 HOH HOH U . E 4 HOH 7 107 64 HOH HOH U . E 4 HOH 8 108 52 HOH HOH U . E 4 HOH 9 109 5 HOH HOH U . E 4 HOH 10 110 12 HOH HOH U . E 4 HOH 11 111 14 HOH HOH U . E 4 HOH 12 112 19 HOH HOH U . E 4 HOH 13 113 23 HOH HOH U . E 4 HOH 14 114 60 HOH HOH U . E 4 HOH 15 115 6 HOH HOH U . E 4 HOH 16 116 7 HOH HOH U . E 4 HOH 17 117 77 HOH HOH U . E 4 HOH 18 118 10 HOH HOH U . F 4 HOH 1 101 18 HOH HOH B . F 4 HOH 2 102 42 HOH HOH B . F 4 HOH 3 103 4 HOH HOH B . F 4 HOH 4 104 61 HOH HOH B . F 4 HOH 5 105 49 HOH HOH B . F 4 HOH 6 106 15 HOH HOH B . F 4 HOH 7 107 30 HOH HOH B . F 4 HOH 8 108 74 HOH HOH B . F 4 HOH 9 109 71 HOH HOH B . F 4 HOH 10 110 79 HOH HOH B . F 4 HOH 11 111 16 HOH HOH B . F 4 HOH 12 112 85 HOH HOH B . F 4 HOH 13 113 55 HOH HOH B . F 4 HOH 14 114 2 HOH HOH B . F 4 HOH 15 115 11 HOH HOH B . F 4 HOH 16 116 68 HOH HOH B . F 4 HOH 17 117 44 HOH HOH B . F 4 HOH 18 118 35 HOH HOH B . F 4 HOH 19 119 21 HOH HOH B . F 4 HOH 20 120 51 HOH HOH B . F 4 HOH 21 121 84 HOH HOH B . F 4 HOH 22 122 48 HOH HOH B . F 4 HOH 23 123 22 HOH HOH B . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A LYS 155 ? CD ? A LYS 12 CD 2 1 Y 1 A LYS 155 ? CE ? A LYS 12 CE 3 1 Y 1 A LYS 155 ? NZ ? A LYS 12 NZ 4 1 Y 1 A GLU 181 ? CD ? A GLU 38 CD 5 1 Y 1 A GLU 181 ? OE1 ? A GLU 38 OE1 6 1 Y 1 A GLU 181 ? OE2 ? A GLU 38 OE2 7 1 Y 1 U DA 1 ? "O5'" ? B DA 1 "O5'" # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? XSCALE ? ? ? . 1 ? phasing ? ? ? ? ? ? ? ? ? ? ? SHELX ? ? ? . 2 ? refinement ? ? ? ? ? ? ? ? ? ? ? BUSTER-TNT ? ? ? . 3 ? 'data extraction' ? ? ? ? ? ? ? ? ? ? ? PDB_EXTRACT ? ? ? 3.20 4 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 5 # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 98.610 _cell.angle_beta_esd ? _cell.angle_gamma 90.000 _cell.angle_gamma_esd ? _cell.entry_id 5LXU _cell.details ? _cell.formula_units_Z ? _cell.length_a 42.160 _cell.length_a_esd ? _cell.length_b 32.830 _cell.length_b_esd ? _cell.length_c 53.760 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 2 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 5LXU _symmetry.cell_setting ? _symmetry.Int_Tables_number 3 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 2 1' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 5LXU _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.84 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 56.71 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '0.1M bis-tris propane, 20% PEG 3350, 0.2M sodium malonate' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS PILATUS 6M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2015-05-01 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97886 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'ESRF BEAMLINE ID29' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.97886 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline ID29 _diffrn_source.pdbx_synchrotron_site ESRF # _reflns.B_iso_Wilson_estimate 57.220 _reflns.entry_id 5LXU _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 2.140 _reflns.d_resolution_low 42. _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 13640 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I -3.000 _reflns.percent_possible_obs 86.700 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 1.47 _reflns.pdbx_Rmerge_I_obs 0.032 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 13.480 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.999 _reflns.pdbx_R_split ? # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.meanI_over_sigI_all _reflns_shell.meanI_over_sigI_obs _reflns_shell.number_measured_all _reflns_shell.number_measured_obs _reflns_shell.number_possible _reflns_shell.number_unique_all _reflns_shell.number_unique_obs _reflns_shell.percent_possible_all _reflns_shell.percent_possible_obs _reflns_shell.Rmerge_F_all _reflns_shell.Rmerge_F_obs _reflns_shell.Rmerge_I_all _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_gt _reflns_shell.meanI_over_uI_all _reflns_shell.meanI_over_uI_gt _reflns_shell.number_measured_gt _reflns_shell.number_unique_gt _reflns_shell.percent_possible_gt _reflns_shell.Rmerge_F_gt _reflns_shell.Rmerge_I_gt _reflns_shell.pdbx_redundancy _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_netI_over_sigmaI_all _reflns_shell.pdbx_netI_over_sigmaI_obs _reflns_shell.pdbx_Rrim_I_all _reflns_shell.pdbx_Rpim_I_all _reflns_shell.pdbx_rejects _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_CC_half _reflns_shell.pdbx_R_split 2.140 2.220 ? 1.590 ? ? ? ? ? 54.900 ? ? ? ? 0.452 ? ? ? ? ? ? ? ? 0.88 ? ? ? ? ? ? ? 1 1 0.651 ? 2.220 2.310 ? 2.590 ? ? ? ? ? 72.900 ? ? ? ? 0.282 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 2 1 0.829 ? 2.310 2.410 ? 3.700 ? ? ? ? ? 93.300 ? ? ? ? 0.211 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 3 1 0.912 ? 2.410 2.540 ? 5.110 ? ? ? ? ? 93.300 ? ? ? ? 0.139 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 4 1 0.962 ? 2.540 2.700 ? 7.160 ? ? ? ? ? 91.100 ? ? ? ? 0.097 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 5 1 0.977 ? 2.700 2.900 ? 9.880 ? ? ? ? ? 93.600 ? ? ? ? 0.063 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 6 1 0.992 ? 2.900 3.200 ? 14.440 ? ? ? ? ? 91.800 ? ? ? ? 0.042 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 7 1 0.998 ? 3.200 3.660 ? 21.080 ? ? ? ? ? 91.500 ? ? ? ? 0.028 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 8 1 0.998 ? 3.660 4.610 ? 29.140 ? ? ? ? ? 94.400 ? ? ? ? 0.020 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 9 1 0.998 ? 4.610 ? ? 32.790 ? ? ? ? ? 91.600 ? ? ? ? 0.019 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 10 1 0.999 ? # _refine.aniso_B[1][1] -14.1243 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] -2.9949 _refine.aniso_B[2][2] 5.2588 _refine.aniso_B[2][3] 0.0000 _refine.aniso_B[3][3] 8.8655 _refine.B_iso_max 121.530 _refine.B_iso_mean 56.4500 _refine.B_iso_min 34.830 _refine.correlation_coeff_Fo_to_Fc 0.9470 _refine.correlation_coeff_Fo_to_Fc_free 0.9270 _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 5LXU _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 2.1400 _refine.ls_d_res_low 41.6800 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 7572 _refine.ls_number_reflns_R_free 379 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 91.8000 _refine.ls_percent_reflns_R_free 5.0100 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1970 _refine.ls_R_factor_R_free 0.2320 _refine.ls_R_factor_R_free_error 0.0000 _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.1950 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI 0.1810 _refine.pdbx_overall_SU_R_free_Blow_DPI 0.1910 _refine.pdbx_overall_SU_R_Blow_DPI 0.2480 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML ? _refine.overall_SU_R_Cruickshank_DPI 0.2170 _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_analyze.entry_id 5LXU _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_analyze.Luzzati_coordinate_error_free ? _refine_analyze.Luzzati_coordinate_error_obs 0.320 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.Luzzati_d_res_low_obs ? _refine_analyze.Luzzati_sigma_a_free ? _refine_analyze.Luzzati_sigma_a_free_details ? _refine_analyze.Luzzati_sigma_a_obs ? _refine_analyze.Luzzati_sigma_a_obs_details ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.RG_d_res_high ? _refine_analyze.RG_d_res_low ? _refine_analyze.RG_free ? _refine_analyze.RG_work ? _refine_analyze.RG_free_work_ratio ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? # _refine_hist.cycle_id final _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.d_res_high 2.1400 _refine_hist.d_res_low 41.6800 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 93 _refine_hist.number_atoms_total 965 _refine_hist.pdbx_number_residues_total 77 _refine_hist.pdbx_B_iso_mean_solvent 58.16 _refine_hist.pdbx_number_atoms_protein 466 _refine_hist.pdbx_number_atoms_nucleic_acid 406 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? ? ? 272 ? t_dihedral_angle_d 2.000 SINUSOIDAL 'X-RAY DIFFRACTION' ? ? ? 8 ? t_trig_c_planes 2.000 HARMONIC 'X-RAY DIFFRACTION' ? ? ? 90 ? t_gen_planes 5.000 HARMONIC 'X-RAY DIFFRACTION' ? ? ? 934 ? t_it 20.000 HARMONIC 'X-RAY DIFFRACTION' ? ? ? ? ? t_nbd ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? t_improper_torsion ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? t_pseud_angle ? ? 'X-RAY DIFFRACTION' ? ? ? 121 ? t_chiral_improper_torsion 5.000 SEMIHARMONIC 'X-RAY DIFFRACTION' ? ? ? ? ? t_sum_occupancies ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? t_utility_distance ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? t_utility_angle ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? t_utility_torsion ? ? 'X-RAY DIFFRACTION' ? ? ? 1002 ? t_ideal_dist_contact 4.000 SEMIHARMONIC 'X-RAY DIFFRACTION' ? 0.008 ? 934 ? t_bond_d 2.000 HARMONIC 'X-RAY DIFFRACTION' ? 0.910 ? 1348 ? t_angle_deg 2.000 HARMONIC 'X-RAY DIFFRACTION' ? 2.250 ? ? ? t_omega_torsion ? ? 'X-RAY DIFFRACTION' ? 22.210 ? ? ? t_other_torsion ? ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.d_res_high 2.1400 _refine_ls_shell.d_res_low 2.3900 _refine_ls_shell.number_reflns_all 1699 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.number_reflns_R_free 82 _refine_ls_shell.number_reflns_R_work 1617 _refine_ls_shell.percent_reflns_obs 74.0700 _refine_ls_shell.percent_reflns_R_free 4.8300 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_obs ? _refine_ls_shell.R_factor_R_free 0.2680 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.R_factor_R_work 0.2290 _refine_ls_shell.redundancy_reflns_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.wR_factor_all ? _refine_ls_shell.wR_factor_obs ? _refine_ls_shell.wR_factor_R_free ? _refine_ls_shell.wR_factor_R_work ? _refine_ls_shell.pdbx_total_number_of_bins_used 5 _refine_ls_shell.pdbx_phase_error ? _refine_ls_shell.pdbx_fsc_work ? _refine_ls_shell.pdbx_fsc_free ? # _struct.entry_id 5LXU _struct.title 'Structure of the DNA-binding domain of LUX ARRHYTHMO' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 5LXU _struct_keywords.text 'DNA-binding, transcription factor, MYB domain, three helix bundle, DNA binding protein' _struct_keywords.pdbx_keywords 'DNA BINDING PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 4 ? F N N 4 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 UNP PCL1_ARATH Q9SNB4 ? 1 RPRLVWTPQLHKRFVDVVAHLGIKNAVPKTIMQLMNVEGLTRENVASHLQKYRLYLK 144 2 PDB 5LXU 5LXU ? 2 ? 1 3 PDB 5LXU 5LXU ? 3 ? 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 5LXU A 1 ? 57 ? Q9SNB4 144 ? 200 ? 144 200 2 2 5LXU U 1 ? 10 ? 5LXU 1 ? 10 ? 1 10 3 3 5LXU B 1 ? 10 ? 5LXU 20 ? 29 ? 20 29 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 2290 ? 1 MORE -9 ? 1 'SSA (A^2)' 7210 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 THR A 7 ? LEU A 21 ? THR A 150 LEU A 164 1 ? 15 HELX_P HELX_P2 AA2 VAL A 27 ? ASN A 36 ? VAL A 170 ASN A 179 1 ? 10 HELX_P HELX_P3 AA3 THR A 41 ? LYS A 57 ? THR A 184 LYS A 200 1 ? 17 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A ILE 31 C ? ? ? 1_555 A MSE 32 N ? ? A ILE 174 A MSE 175 1_555 ? ? ? ? ? ? ? 1.346 ? ? covale2 covale both ? A MSE 32 C ? ? ? 1_555 A GLN 33 N ? ? A MSE 175 A GLN 176 1_555 ? ? ? ? ? ? ? 1.345 ? ? covale3 covale both ? A LEU 34 C ? ? ? 1_555 A MSE 35 N ? ? A LEU 177 A MSE 178 1_555 ? ? ? ? ? ? ? 1.352 ? ? covale4 covale both ? A MSE 35 C ? ? ? 1_555 A ASN 36 N ? ? A MSE 178 A ASN 179 1_555 ? ? ? ? ? ? ? 1.357 ? ? hydrog1 hydrog ? ? B DT 2 N3 ? ? ? 1_555 C DA 10 N1 ? ? U DT 2 B DA 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? B DT 2 O4 ? ? ? 1_555 C DA 10 N6 ? ? U DT 2 B DA 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? B DG 3 N1 ? ? ? 1_555 C DC 9 N3 ? ? U DG 3 B DC 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? B DG 3 N2 ? ? ? 1_555 C DC 9 O2 ? ? U DG 3 B DC 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? B DG 3 O6 ? ? ? 1_555 C DC 9 N4 ? ? U DG 3 B DC 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? B DC 4 N3 ? ? ? 1_555 C DG 8 N1 ? ? U DC 4 B DG 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? B DC 4 N4 ? ? ? 1_555 C DG 8 O6 ? ? U DC 4 B DG 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? B DC 4 O2 ? ? ? 1_555 C DG 8 N2 ? ? U DC 4 B DG 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? B DG 5 N1 ? ? ? 1_555 C DC 7 N3 ? ? U DG 5 B DC 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? B DG 5 N2 ? ? ? 1_555 C DC 7 O2 ? ? U DG 5 B DC 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? B DG 5 O6 ? ? ? 1_555 C DC 7 N4 ? ? U DG 5 B DC 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? B DT 6 N3 ? ? ? 1_555 C DA 6 N1 ? ? U DT 6 B DA 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? B DT 6 O4 ? ? ? 1_555 C DA 6 N6 ? ? U DT 6 B DA 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? B DA 7 N1 ? ? ? 1_555 C DT 5 N3 ? ? U DA 7 B DT 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? B DA 7 N6 ? ? ? 1_555 C DT 5 O4 ? ? U DA 7 B DT 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? B DT 8 N3 ? ? ? 1_555 C DA 4 N1 ? ? U DT 8 B DA 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? B DT 8 O4 ? ? ? 1_555 C DA 4 N6 ? ? U DT 8 B DA 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? B DC 9 N3 ? ? ? 1_555 C DG 3 N1 ? ? U DC 9 B DG 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? B DC 9 N4 ? ? ? 1_555 C DG 3 O6 ? ? U DC 9 B DG 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? B DC 9 O2 ? ? ? 1_555 C DG 3 N2 ? ? U DC 9 B DG 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? B DT 10 N3 ? ? ? 1_555 C DA 2 N1 ? ? U DT 10 B DA 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? B DT 10 O4 ? ? ? 1_555 C DA 2 N6 ? ? U DT 10 B DA 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # loop_ _pdbx_modification_feature.ordinal _pdbx_modification_feature.label_comp_id _pdbx_modification_feature.label_asym_id _pdbx_modification_feature.label_seq_id _pdbx_modification_feature.label_alt_id _pdbx_modification_feature.modified_residue_label_comp_id _pdbx_modification_feature.modified_residue_label_asym_id _pdbx_modification_feature.modified_residue_label_seq_id _pdbx_modification_feature.modified_residue_label_alt_id _pdbx_modification_feature.auth_comp_id _pdbx_modification_feature.auth_asym_id _pdbx_modification_feature.auth_seq_id _pdbx_modification_feature.PDB_ins_code _pdbx_modification_feature.symmetry _pdbx_modification_feature.modified_residue_auth_comp_id _pdbx_modification_feature.modified_residue_auth_asym_id _pdbx_modification_feature.modified_residue_auth_seq_id _pdbx_modification_feature.modified_residue_PDB_ins_code _pdbx_modification_feature.modified_residue_symmetry _pdbx_modification_feature.comp_id_linking_atom _pdbx_modification_feature.modified_residue_id_linking_atom _pdbx_modification_feature.modified_residue_id _pdbx_modification_feature.ref_pcm_id _pdbx_modification_feature.ref_comp_id _pdbx_modification_feature.type _pdbx_modification_feature.category 1 MSE A 32 ? . . . . MSE A 175 ? 1_555 . . . . . . . MET 1 MSE Selenomethionine 'Named protein modification' 2 MSE A 35 ? . . . . MSE A 178 ? 1_555 . . . . . . . MET 1 MSE Selenomethionine 'Named protein modification' # _pdbx_entry_details.entry_id 5LXU _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_ligand_of_interest ? _pdbx_entry_details.has_protein_modification Y # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" U DG 3 ? ? "C1'" U DG 3 ? ? N9 U DG 3 ? ? 110.17 108.30 1.87 0.30 N 2 1 "O4'" B DC 26 ? ? "C1'" B DC 26 ? ? N1 B DC 26 ? ? 110.39 108.30 2.09 0.30 N 3 1 "O4'" B DC 28 ? ? "C1'" B DC 28 ? ? N1 B DC 28 ? ? 110.37 108.30 2.07 0.30 N # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 32 A MSE 175 ? MET 'modified residue' 2 A MSE 35 A MSE 178 ? MET 'modified residue' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] 'X-RAY DIFFRACTION' 1 ? refined -7.5447 31.0344 68.1326 -0.0692 0.0212 -0.1186 0.0633 0.0052 0.0004 3.1346 3.6288 4.4798 -0.0486 -0.0436 -0.3782 -0.0214 0.0809 -0.0595 0.1128 0.0962 0.0336 -0.0441 -0.1380 -0.5334 'X-RAY DIFFRACTION' 2 ? refined 6.5574 28.2376 65.5056 -0.0774 -0.1401 -0.0313 -0.0012 0.0166 -0.0374 5.1670 7.6549 3.6721 0.1069 -0.3339 -1.8563 0.0804 -0.2290 0.1486 0.0151 -0.0938 -0.5693 -0.1244 0.0347 0.2653 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection_details _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection 'X-RAY DIFFRACTION' 1 1 A 144 A 200 '{ A|* }' ? ? ? ? ? 'X-RAY DIFFRACTION' 2 2 U 1 U 29 '{ U|* }' ? ? ? ? ? # _phasing.method SAD # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 DA OP3 O N N 74 DA P P N N 75 DA OP1 O N N 76 DA OP2 O N N 77 DA "O5'" O N N 78 DA "C5'" C N N 79 DA "C4'" C N R 80 DA "O4'" O N N 81 DA "C3'" C N S 82 DA "O3'" O N N 83 DA "C2'" C N N 84 DA "C1'" C N R 85 DA N9 N Y N 86 DA C8 C Y N 87 DA N7 N Y N 88 DA C5 C Y N 89 DA C6 C Y N 90 DA N6 N N N 91 DA N1 N Y N 92 DA C2 C Y N 93 DA N3 N Y N 94 DA C4 C Y N 95 DA HOP3 H N N 96 DA HOP2 H N N 97 DA "H5'" H N N 98 DA "H5''" H N N 99 DA "H4'" H N N 100 DA "H3'" H N N 101 DA "HO3'" H N N 102 DA "H2'" H N N 103 DA "H2''" H N N 104 DA "H1'" H N N 105 DA H8 H N N 106 DA H61 H N N 107 DA H62 H N N 108 DA H2 H N N 109 DC OP3 O N N 110 DC P P N N 111 DC OP1 O N N 112 DC OP2 O N N 113 DC "O5'" O N N 114 DC "C5'" C N N 115 DC "C4'" C N R 116 DC "O4'" O N N 117 DC "C3'" C N S 118 DC "O3'" O N N 119 DC "C2'" C N N 120 DC "C1'" C N R 121 DC N1 N N N 122 DC C2 C N N 123 DC O2 O N N 124 DC N3 N N N 125 DC C4 C N N 126 DC N4 N N N 127 DC C5 C N N 128 DC C6 C N N 129 DC HOP3 H N N 130 DC HOP2 H N N 131 DC "H5'" H N N 132 DC "H5''" H N N 133 DC "H4'" H N N 134 DC "H3'" H N N 135 DC "HO3'" H N N 136 DC "H2'" H N N 137 DC "H2''" H N N 138 DC "H1'" H N N 139 DC H41 H N N 140 DC H42 H N N 141 DC H5 H N N 142 DC H6 H N N 143 DG OP3 O N N 144 DG P P N N 145 DG OP1 O N N 146 DG OP2 O N N 147 DG "O5'" O N N 148 DG "C5'" C N N 149 DG "C4'" C N R 150 DG "O4'" O N N 151 DG "C3'" C N S 152 DG "O3'" O N N 153 DG "C2'" C N N 154 DG "C1'" C N R 155 DG N9 N Y N 156 DG C8 C Y N 157 DG N7 N Y N 158 DG C5 C Y N 159 DG C6 C N N 160 DG O6 O N N 161 DG N1 N N N 162 DG C2 C N N 163 DG N2 N N N 164 DG N3 N N N 165 DG C4 C Y N 166 DG HOP3 H N N 167 DG HOP2 H N N 168 DG "H5'" H N N 169 DG "H5''" H N N 170 DG "H4'" H N N 171 DG "H3'" H N N 172 DG "HO3'" H N N 173 DG "H2'" H N N 174 DG "H2''" H N N 175 DG "H1'" H N N 176 DG H8 H N N 177 DG H1 H N N 178 DG H21 H N N 179 DG H22 H N N 180 DT OP3 O N N 181 DT P P N N 182 DT OP1 O N N 183 DT OP2 O N N 184 DT "O5'" O N N 185 DT "C5'" C N N 186 DT "C4'" C N R 187 DT "O4'" O N N 188 DT "C3'" C N S 189 DT "O3'" O N N 190 DT "C2'" C N N 191 DT "C1'" C N R 192 DT N1 N N N 193 DT C2 C N N 194 DT O2 O N N 195 DT N3 N N N 196 DT C4 C N N 197 DT O4 O N N 198 DT C5 C N N 199 DT C7 C N N 200 DT C6 C N N 201 DT HOP3 H N N 202 DT HOP2 H N N 203 DT "H5'" H N N 204 DT "H5''" H N N 205 DT "H4'" H N N 206 DT "H3'" H N N 207 DT "HO3'" H N N 208 DT "H2'" H N N 209 DT "H2''" H N N 210 DT "H1'" H N N 211 DT H3 H N N 212 DT H71 H N N 213 DT H72 H N N 214 DT H73 H N N 215 DT H6 H N N 216 GLN N N N N 217 GLN CA C N S 218 GLN C C N N 219 GLN O O N N 220 GLN CB C N N 221 GLN CG C N N 222 GLN CD C N N 223 GLN OE1 O N N 224 GLN NE2 N N N 225 GLN OXT O N N 226 GLN H H N N 227 GLN H2 H N N 228 GLN HA H N N 229 GLN HB2 H N N 230 GLN HB3 H N N 231 GLN HG2 H N N 232 GLN HG3 H N N 233 GLN HE21 H N N 234 GLN HE22 H N N 235 GLN HXT H N N 236 GLU N N N N 237 GLU CA C N S 238 GLU C C N N 239 GLU O O N N 240 GLU CB C N N 241 GLU CG C N N 242 GLU CD C N N 243 GLU OE1 O N N 244 GLU OE2 O N N 245 GLU OXT O N N 246 GLU H H N N 247 GLU H2 H N N 248 GLU HA H N N 249 GLU HB2 H N N 250 GLU HB3 H N N 251 GLU HG2 H N N 252 GLU HG3 H N N 253 GLU HE2 H N N 254 GLU HXT H N N 255 GLY N N N N 256 GLY CA C N N 257 GLY C C N N 258 GLY O O N N 259 GLY OXT O N N 260 GLY H H N N 261 GLY H2 H N N 262 GLY HA2 H N N 263 GLY HA3 H N N 264 GLY HXT H N N 265 HIS N N N N 266 HIS CA C N S 267 HIS C C N N 268 HIS O O N N 269 HIS CB C N N 270 HIS CG C Y N 271 HIS ND1 N Y N 272 HIS CD2 C Y N 273 HIS CE1 C Y N 274 HIS NE2 N Y N 275 HIS OXT O N N 276 HIS H H N N 277 HIS H2 H N N 278 HIS HA H N N 279 HIS HB2 H N N 280 HIS HB3 H N N 281 HIS HD1 H N N 282 HIS HD2 H N N 283 HIS HE1 H N N 284 HIS HE2 H N N 285 HIS HXT H N N 286 HOH O O N N 287 HOH H1 H N N 288 HOH H2 H N N 289 ILE N N N N 290 ILE CA C N S 291 ILE C C N N 292 ILE O O N N 293 ILE CB C N S 294 ILE CG1 C N N 295 ILE CG2 C N N 296 ILE CD1 C N N 297 ILE OXT O N N 298 ILE H H N N 299 ILE H2 H N N 300 ILE HA H N N 301 ILE HB H N N 302 ILE HG12 H N N 303 ILE HG13 H N N 304 ILE HG21 H N N 305 ILE HG22 H N N 306 ILE HG23 H N N 307 ILE HD11 H N N 308 ILE HD12 H N N 309 ILE HD13 H N N 310 ILE HXT H N N 311 LEU N N N N 312 LEU CA C N S 313 LEU C C N N 314 LEU O O N N 315 LEU CB C N N 316 LEU CG C N N 317 LEU CD1 C N N 318 LEU CD2 C N N 319 LEU OXT O N N 320 LEU H H N N 321 LEU H2 H N N 322 LEU HA H N N 323 LEU HB2 H N N 324 LEU HB3 H N N 325 LEU HG H N N 326 LEU HD11 H N N 327 LEU HD12 H N N 328 LEU HD13 H N N 329 LEU HD21 H N N 330 LEU HD22 H N N 331 LEU HD23 H N N 332 LEU HXT H N N 333 LYS N N N N 334 LYS CA C N S 335 LYS C C N N 336 LYS O O N N 337 LYS CB C N N 338 LYS CG C N N 339 LYS CD C N N 340 LYS CE C N N 341 LYS NZ N N N 342 LYS OXT O N N 343 LYS H H N N 344 LYS H2 H N N 345 LYS HA H N N 346 LYS HB2 H N N 347 LYS HB3 H N N 348 LYS HG2 H N N 349 LYS HG3 H N N 350 LYS HD2 H N N 351 LYS HD3 H N N 352 LYS HE2 H N N 353 LYS HE3 H N N 354 LYS HZ1 H N N 355 LYS HZ2 H N N 356 LYS HZ3 H N N 357 LYS HXT H N N 358 MSE N N N N 359 MSE CA C N S 360 MSE C C N N 361 MSE O O N N 362 MSE OXT O N N 363 MSE CB C N N 364 MSE CG C N N 365 MSE SE SE N N 366 MSE CE C N N 367 MSE H H N N 368 MSE H2 H N N 369 MSE HA H N N 370 MSE HXT H N N 371 MSE HB2 H N N 372 MSE HB3 H N N 373 MSE HG2 H N N 374 MSE HG3 H N N 375 MSE HE1 H N N 376 MSE HE2 H N N 377 MSE HE3 H N N 378 PHE N N N N 379 PHE CA C N S 380 PHE C C N N 381 PHE O O N N 382 PHE CB C N N 383 PHE CG C Y N 384 PHE CD1 C Y N 385 PHE CD2 C Y N 386 PHE CE1 C Y N 387 PHE CE2 C Y N 388 PHE CZ C Y N 389 PHE OXT O N N 390 PHE H H N N 391 PHE H2 H N N 392 PHE HA H N N 393 PHE HB2 H N N 394 PHE HB3 H N N 395 PHE HD1 H N N 396 PHE HD2 H N N 397 PHE HE1 H N N 398 PHE HE2 H N N 399 PHE HZ H N N 400 PHE HXT H N N 401 PRO N N N N 402 PRO CA C N S 403 PRO C C N N 404 PRO O O N N 405 PRO CB C N N 406 PRO CG C N N 407 PRO CD C N N 408 PRO OXT O N N 409 PRO H H N N 410 PRO HA H N N 411 PRO HB2 H N N 412 PRO HB3 H N N 413 PRO HG2 H N N 414 PRO HG3 H N N 415 PRO HD2 H N N 416 PRO HD3 H N N 417 PRO HXT H N N 418 SER N N N N 419 SER CA C N S 420 SER C C N N 421 SER O O N N 422 SER CB C N N 423 SER OG O N N 424 SER OXT O N N 425 SER H H N N 426 SER H2 H N N 427 SER HA H N N 428 SER HB2 H N N 429 SER HB3 H N N 430 SER HG H N N 431 SER HXT H N N 432 THR N N N N 433 THR CA C N S 434 THR C C N N 435 THR O O N N 436 THR CB C N R 437 THR OG1 O N N 438 THR CG2 C N N 439 THR OXT O N N 440 THR H H N N 441 THR H2 H N N 442 THR HA H N N 443 THR HB H N N 444 THR HG1 H N N 445 THR HG21 H N N 446 THR HG22 H N N 447 THR HG23 H N N 448 THR HXT H N N 449 TRP N N N N 450 TRP CA C N S 451 TRP C C N N 452 TRP O O N N 453 TRP CB C N N 454 TRP CG C Y N 455 TRP CD1 C Y N 456 TRP CD2 C Y N 457 TRP NE1 N Y N 458 TRP CE2 C Y N 459 TRP CE3 C Y N 460 TRP CZ2 C Y N 461 TRP CZ3 C Y N 462 TRP CH2 C Y N 463 TRP OXT O N N 464 TRP H H N N 465 TRP H2 H N N 466 TRP HA H N N 467 TRP HB2 H N N 468 TRP HB3 H N N 469 TRP HD1 H N N 470 TRP HE1 H N N 471 TRP HE3 H N N 472 TRP HZ2 H N N 473 TRP HZ3 H N N 474 TRP HH2 H N N 475 TRP HXT H N N 476 TYR N N N N 477 TYR CA C N S 478 TYR C C N N 479 TYR O O N N 480 TYR CB C N N 481 TYR CG C Y N 482 TYR CD1 C Y N 483 TYR CD2 C Y N 484 TYR CE1 C Y N 485 TYR CE2 C Y N 486 TYR CZ C Y N 487 TYR OH O N N 488 TYR OXT O N N 489 TYR H H N N 490 TYR H2 H N N 491 TYR HA H N N 492 TYR HB2 H N N 493 TYR HB3 H N N 494 TYR HD1 H N N 495 TYR HD2 H N N 496 TYR HE1 H N N 497 TYR HE2 H N N 498 TYR HH H N N 499 TYR HXT H N N 500 VAL N N N N 501 VAL CA C N S 502 VAL C C N N 503 VAL O O N N 504 VAL CB C N N 505 VAL CG1 C N N 506 VAL CG2 C N N 507 VAL OXT O N N 508 VAL H H N N 509 VAL H2 H N N 510 VAL HA H N N 511 VAL HB H N N 512 VAL HG11 H N N 513 VAL HG12 H N N 514 VAL HG13 H N N 515 VAL HG21 H N N 516 VAL HG22 H N N 517 VAL HG23 H N N 518 VAL HXT H N N 519 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 DA OP3 P sing N N 70 DA OP3 HOP3 sing N N 71 DA P OP1 doub N N 72 DA P OP2 sing N N 73 DA P "O5'" sing N N 74 DA OP2 HOP2 sing N N 75 DA "O5'" "C5'" sing N N 76 DA "C5'" "C4'" sing N N 77 DA "C5'" "H5'" sing N N 78 DA "C5'" "H5''" sing N N 79 DA "C4'" "O4'" sing N N 80 DA "C4'" "C3'" sing N N 81 DA "C4'" "H4'" sing N N 82 DA "O4'" "C1'" sing N N 83 DA "C3'" "O3'" sing N N 84 DA "C3'" "C2'" sing N N 85 DA "C3'" "H3'" sing N N 86 DA "O3'" "HO3'" sing N N 87 DA "C2'" "C1'" sing N N 88 DA "C2'" "H2'" sing N N 89 DA "C2'" "H2''" sing N N 90 DA "C1'" N9 sing N N 91 DA "C1'" "H1'" sing N N 92 DA N9 C8 sing Y N 93 DA N9 C4 sing Y N 94 DA C8 N7 doub Y N 95 DA C8 H8 sing N N 96 DA N7 C5 sing Y N 97 DA C5 C6 sing Y N 98 DA C5 C4 doub Y N 99 DA C6 N6 sing N N 100 DA C6 N1 doub Y N 101 DA N6 H61 sing N N 102 DA N6 H62 sing N N 103 DA N1 C2 sing Y N 104 DA C2 N3 doub Y N 105 DA C2 H2 sing N N 106 DA N3 C4 sing Y N 107 DC OP3 P sing N N 108 DC OP3 HOP3 sing N N 109 DC P OP1 doub N N 110 DC P OP2 sing N N 111 DC P "O5'" sing N N 112 DC OP2 HOP2 sing N N 113 DC "O5'" "C5'" sing N N 114 DC "C5'" "C4'" sing N N 115 DC "C5'" "H5'" sing N N 116 DC "C5'" "H5''" sing N N 117 DC "C4'" "O4'" sing N N 118 DC "C4'" "C3'" sing N N 119 DC "C4'" "H4'" sing N N 120 DC "O4'" "C1'" sing N N 121 DC "C3'" "O3'" sing N N 122 DC "C3'" "C2'" sing N N 123 DC "C3'" "H3'" sing N N 124 DC "O3'" "HO3'" sing N N 125 DC "C2'" "C1'" sing N N 126 DC "C2'" "H2'" sing N N 127 DC "C2'" "H2''" sing N N 128 DC "C1'" N1 sing N N 129 DC "C1'" "H1'" sing N N 130 DC N1 C2 sing N N 131 DC N1 C6 sing N N 132 DC C2 O2 doub N N 133 DC C2 N3 sing N N 134 DC N3 C4 doub N N 135 DC C4 N4 sing N N 136 DC C4 C5 sing N N 137 DC N4 H41 sing N N 138 DC N4 H42 sing N N 139 DC C5 C6 doub N N 140 DC C5 H5 sing N N 141 DC C6 H6 sing N N 142 DG OP3 P sing N N 143 DG OP3 HOP3 sing N N 144 DG P OP1 doub N N 145 DG P OP2 sing N N 146 DG P "O5'" sing N N 147 DG OP2 HOP2 sing N N 148 DG "O5'" "C5'" sing N N 149 DG "C5'" "C4'" sing N N 150 DG "C5'" "H5'" sing N N 151 DG "C5'" "H5''" sing N N 152 DG "C4'" "O4'" sing N N 153 DG "C4'" "C3'" sing N N 154 DG "C4'" "H4'" sing N N 155 DG "O4'" "C1'" sing N N 156 DG "C3'" "O3'" sing N N 157 DG "C3'" "C2'" sing N N 158 DG "C3'" "H3'" sing N N 159 DG "O3'" "HO3'" sing N N 160 DG "C2'" "C1'" sing N N 161 DG "C2'" "H2'" sing N N 162 DG "C2'" "H2''" sing N N 163 DG "C1'" N9 sing N N 164 DG "C1'" "H1'" sing N N 165 DG N9 C8 sing Y N 166 DG N9 C4 sing Y N 167 DG C8 N7 doub Y N 168 DG C8 H8 sing N N 169 DG N7 C5 sing Y N 170 DG C5 C6 sing N N 171 DG C5 C4 doub Y N 172 DG C6 O6 doub N N 173 DG C6 N1 sing N N 174 DG N1 C2 sing N N 175 DG N1 H1 sing N N 176 DG C2 N2 sing N N 177 DG C2 N3 doub N N 178 DG N2 H21 sing N N 179 DG N2 H22 sing N N 180 DG N3 C4 sing N N 181 DT OP3 P sing N N 182 DT OP3 HOP3 sing N N 183 DT P OP1 doub N N 184 DT P OP2 sing N N 185 DT P "O5'" sing N N 186 DT OP2 HOP2 sing N N 187 DT "O5'" "C5'" sing N N 188 DT "C5'" "C4'" sing N N 189 DT "C5'" "H5'" sing N N 190 DT "C5'" "H5''" sing N N 191 DT "C4'" "O4'" sing N N 192 DT "C4'" "C3'" sing N N 193 DT "C4'" "H4'" sing N N 194 DT "O4'" "C1'" sing N N 195 DT "C3'" "O3'" sing N N 196 DT "C3'" "C2'" sing N N 197 DT "C3'" "H3'" sing N N 198 DT "O3'" "HO3'" sing N N 199 DT "C2'" "C1'" sing N N 200 DT "C2'" "H2'" sing N N 201 DT "C2'" "H2''" sing N N 202 DT "C1'" N1 sing N N 203 DT "C1'" "H1'" sing N N 204 DT N1 C2 sing N N 205 DT N1 C6 sing N N 206 DT C2 O2 doub N N 207 DT C2 N3 sing N N 208 DT N3 C4 sing N N 209 DT N3 H3 sing N N 210 DT C4 O4 doub N N 211 DT C4 C5 sing N N 212 DT C5 C7 sing N N 213 DT C5 C6 doub N N 214 DT C7 H71 sing N N 215 DT C7 H72 sing N N 216 DT C7 H73 sing N N 217 DT C6 H6 sing N N 218 GLN N CA sing N N 219 GLN N H sing N N 220 GLN N H2 sing N N 221 GLN CA C sing N N 222 GLN CA CB sing N N 223 GLN CA HA sing N N 224 GLN C O doub N N 225 GLN C OXT sing N N 226 GLN CB CG sing N N 227 GLN CB HB2 sing N N 228 GLN CB HB3 sing N N 229 GLN CG CD sing N N 230 GLN CG HG2 sing N N 231 GLN CG HG3 sing N N 232 GLN CD OE1 doub N N 233 GLN CD NE2 sing N N 234 GLN NE2 HE21 sing N N 235 GLN NE2 HE22 sing N N 236 GLN OXT HXT sing N N 237 GLU N CA sing N N 238 GLU N H sing N N 239 GLU N H2 sing N N 240 GLU CA C sing N N 241 GLU CA CB sing N N 242 GLU CA HA sing N N 243 GLU C O doub N N 244 GLU C OXT sing N N 245 GLU CB CG sing N N 246 GLU CB HB2 sing N N 247 GLU CB HB3 sing N N 248 GLU CG CD sing N N 249 GLU CG HG2 sing N N 250 GLU CG HG3 sing N N 251 GLU CD OE1 doub N N 252 GLU CD OE2 sing N N 253 GLU OE2 HE2 sing N N 254 GLU OXT HXT sing N N 255 GLY N CA sing N N 256 GLY N H sing N N 257 GLY N H2 sing N N 258 GLY CA C sing N N 259 GLY CA HA2 sing N N 260 GLY CA HA3 sing N N 261 GLY C O doub N N 262 GLY C OXT sing N N 263 GLY OXT HXT sing N N 264 HIS N CA sing N N 265 HIS N H sing N N 266 HIS N H2 sing N N 267 HIS CA C sing N N 268 HIS CA CB sing N N 269 HIS CA HA sing N N 270 HIS C O doub N N 271 HIS C OXT sing N N 272 HIS CB CG sing N N 273 HIS CB HB2 sing N N 274 HIS CB HB3 sing N N 275 HIS CG ND1 sing Y N 276 HIS CG CD2 doub Y N 277 HIS ND1 CE1 doub Y N 278 HIS ND1 HD1 sing N N 279 HIS CD2 NE2 sing Y N 280 HIS CD2 HD2 sing N N 281 HIS CE1 NE2 sing Y N 282 HIS CE1 HE1 sing N N 283 HIS NE2 HE2 sing N N 284 HIS OXT HXT sing N N 285 HOH O H1 sing N N 286 HOH O H2 sing N N 287 ILE N CA sing N N 288 ILE N H sing N N 289 ILE N H2 sing N N 290 ILE CA C sing N N 291 ILE CA CB sing N N 292 ILE CA HA sing N N 293 ILE C O doub N N 294 ILE C OXT sing N N 295 ILE CB CG1 sing N N 296 ILE CB CG2 sing N N 297 ILE CB HB sing N N 298 ILE CG1 CD1 sing N N 299 ILE CG1 HG12 sing N N 300 ILE CG1 HG13 sing N N 301 ILE CG2 HG21 sing N N 302 ILE CG2 HG22 sing N N 303 ILE CG2 HG23 sing N N 304 ILE CD1 HD11 sing N N 305 ILE CD1 HD12 sing N N 306 ILE CD1 HD13 sing N N 307 ILE OXT HXT sing N N 308 LEU N CA sing N N 309 LEU N H sing N N 310 LEU N H2 sing N N 311 LEU CA C sing N N 312 LEU CA CB sing N N 313 LEU CA HA sing N N 314 LEU C O doub N N 315 LEU C OXT sing N N 316 LEU CB CG sing N N 317 LEU CB HB2 sing N N 318 LEU CB HB3 sing N N 319 LEU CG CD1 sing N N 320 LEU CG CD2 sing N N 321 LEU CG HG sing N N 322 LEU CD1 HD11 sing N N 323 LEU CD1 HD12 sing N N 324 LEU CD1 HD13 sing N N 325 LEU CD2 HD21 sing N N 326 LEU CD2 HD22 sing N N 327 LEU CD2 HD23 sing N N 328 LEU OXT HXT sing N N 329 LYS N CA sing N N 330 LYS N H sing N N 331 LYS N H2 sing N N 332 LYS CA C sing N N 333 LYS CA CB sing N N 334 LYS CA HA sing N N 335 LYS C O doub N N 336 LYS C OXT sing N N 337 LYS CB CG sing N N 338 LYS CB HB2 sing N N 339 LYS CB HB3 sing N N 340 LYS CG CD sing N N 341 LYS CG HG2 sing N N 342 LYS CG HG3 sing N N 343 LYS CD CE sing N N 344 LYS CD HD2 sing N N 345 LYS CD HD3 sing N N 346 LYS CE NZ sing N N 347 LYS CE HE2 sing N N 348 LYS CE HE3 sing N N 349 LYS NZ HZ1 sing N N 350 LYS NZ HZ2 sing N N 351 LYS NZ HZ3 sing N N 352 LYS OXT HXT sing N N 353 MSE N CA sing N N 354 MSE N H sing N N 355 MSE N H2 sing N N 356 MSE CA C sing N N 357 MSE CA CB sing N N 358 MSE CA HA sing N N 359 MSE C O doub N N 360 MSE C OXT sing N N 361 MSE OXT HXT sing N N 362 MSE CB CG sing N N 363 MSE CB HB2 sing N N 364 MSE CB HB3 sing N N 365 MSE CG SE sing N N 366 MSE CG HG2 sing N N 367 MSE CG HG3 sing N N 368 MSE SE CE sing N N 369 MSE CE HE1 sing N N 370 MSE CE HE2 sing N N 371 MSE CE HE3 sing N N 372 PHE N CA sing N N 373 PHE N H sing N N 374 PHE N H2 sing N N 375 PHE CA C sing N N 376 PHE CA CB sing N N 377 PHE CA HA sing N N 378 PHE C O doub N N 379 PHE C OXT sing N N 380 PHE CB CG sing N N 381 PHE CB HB2 sing N N 382 PHE CB HB3 sing N N 383 PHE CG CD1 doub Y N 384 PHE CG CD2 sing Y N 385 PHE CD1 CE1 sing Y N 386 PHE CD1 HD1 sing N N 387 PHE CD2 CE2 doub Y N 388 PHE CD2 HD2 sing N N 389 PHE CE1 CZ doub Y N 390 PHE CE1 HE1 sing N N 391 PHE CE2 CZ sing Y N 392 PHE CE2 HE2 sing N N 393 PHE CZ HZ sing N N 394 PHE OXT HXT sing N N 395 PRO N CA sing N N 396 PRO N CD sing N N 397 PRO N H sing N N 398 PRO CA C sing N N 399 PRO CA CB sing N N 400 PRO CA HA sing N N 401 PRO C O doub N N 402 PRO C OXT sing N N 403 PRO CB CG sing N N 404 PRO CB HB2 sing N N 405 PRO CB HB3 sing N N 406 PRO CG CD sing N N 407 PRO CG HG2 sing N N 408 PRO CG HG3 sing N N 409 PRO CD HD2 sing N N 410 PRO CD HD3 sing N N 411 PRO OXT HXT sing N N 412 SER N CA sing N N 413 SER N H sing N N 414 SER N H2 sing N N 415 SER CA C sing N N 416 SER CA CB sing N N 417 SER CA HA sing N N 418 SER C O doub N N 419 SER C OXT sing N N 420 SER CB OG sing N N 421 SER CB HB2 sing N N 422 SER CB HB3 sing N N 423 SER OG HG sing N N 424 SER OXT HXT sing N N 425 THR N CA sing N N 426 THR N H sing N N 427 THR N H2 sing N N 428 THR CA C sing N N 429 THR CA CB sing N N 430 THR CA HA sing N N 431 THR C O doub N N 432 THR C OXT sing N N 433 THR CB OG1 sing N N 434 THR CB CG2 sing N N 435 THR CB HB sing N N 436 THR OG1 HG1 sing N N 437 THR CG2 HG21 sing N N 438 THR CG2 HG22 sing N N 439 THR CG2 HG23 sing N N 440 THR OXT HXT sing N N 441 TRP N CA sing N N 442 TRP N H sing N N 443 TRP N H2 sing N N 444 TRP CA C sing N N 445 TRP CA CB sing N N 446 TRP CA HA sing N N 447 TRP C O doub N N 448 TRP C OXT sing N N 449 TRP CB CG sing N N 450 TRP CB HB2 sing N N 451 TRP CB HB3 sing N N 452 TRP CG CD1 doub Y N 453 TRP CG CD2 sing Y N 454 TRP CD1 NE1 sing Y N 455 TRP CD1 HD1 sing N N 456 TRP CD2 CE2 doub Y N 457 TRP CD2 CE3 sing Y N 458 TRP NE1 CE2 sing Y N 459 TRP NE1 HE1 sing N N 460 TRP CE2 CZ2 sing Y N 461 TRP CE3 CZ3 doub Y N 462 TRP CE3 HE3 sing N N 463 TRP CZ2 CH2 doub Y N 464 TRP CZ2 HZ2 sing N N 465 TRP CZ3 CH2 sing Y N 466 TRP CZ3 HZ3 sing N N 467 TRP CH2 HH2 sing N N 468 TRP OXT HXT sing N N 469 TYR N CA sing N N 470 TYR N H sing N N 471 TYR N H2 sing N N 472 TYR CA C sing N N 473 TYR CA CB sing N N 474 TYR CA HA sing N N 475 TYR C O doub N N 476 TYR C OXT sing N N 477 TYR CB CG sing N N 478 TYR CB HB2 sing N N 479 TYR CB HB3 sing N N 480 TYR CG CD1 doub Y N 481 TYR CG CD2 sing Y N 482 TYR CD1 CE1 sing Y N 483 TYR CD1 HD1 sing N N 484 TYR CD2 CE2 doub Y N 485 TYR CD2 HD2 sing N N 486 TYR CE1 CZ doub Y N 487 TYR CE1 HE1 sing N N 488 TYR CE2 CZ sing Y N 489 TYR CE2 HE2 sing N N 490 TYR CZ OH sing N N 491 TYR OH HH sing N N 492 TYR OXT HXT sing N N 493 VAL N CA sing N N 494 VAL N H sing N N 495 VAL N H2 sing N N 496 VAL CA C sing N N 497 VAL CA CB sing N N 498 VAL CA HA sing N N 499 VAL C O doub N N 500 VAL C OXT sing N N 501 VAL CB CG1 sing N N 502 VAL CB CG2 sing N N 503 VAL CB HB sing N N 504 VAL CG1 HG11 sing N N 505 VAL CG1 HG12 sing N N 506 VAL CG1 HG13 sing N N 507 VAL CG2 HG21 sing N N 508 VAL CG2 HG22 sing N N 509 VAL CG2 HG23 sing N N 510 VAL OXT HXT sing N N 511 # _ndb_struct_conf_na.entry_id 5LXU _ndb_struct_conf_na.feature 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 B DT 2 1_555 C DA 10 1_555 0.150 -0.059 0.134 -5.389 -10.476 6.456 1 U_DT2:DA29_B U 2 ? B 29 ? 20 1 1 B DG 3 1_555 C DC 9 1_555 -0.314 -0.147 -0.152 -2.199 0.954 -0.342 2 U_DG3:DC28_B U 3 ? B 28 ? 19 1 1 B DC 4 1_555 C DG 8 1_555 0.187 -0.208 0.487 -4.202 -11.136 -2.597 3 U_DC4:DG27_B U 4 ? B 27 ? 19 1 1 B DG 5 1_555 C DC 7 1_555 -0.501 -0.259 0.034 -2.272 -4.881 -1.345 4 U_DG5:DC26_B U 5 ? B 26 ? 19 1 1 B DT 6 1_555 C DA 6 1_555 -0.093 -0.092 0.253 9.415 -3.888 1.874 5 U_DT6:DA25_B U 6 ? B 25 ? 20 1 1 B DA 7 1_555 C DT 5 1_555 -0.080 -0.052 0.346 12.823 -14.170 0.756 6 U_DA7:DT24_B U 7 ? B 24 ? 20 1 1 B DT 8 1_555 C DA 4 1_555 0.234 -0.094 0.326 8.790 -11.569 7.189 7 U_DT8:DA23_B U 8 ? B 23 ? 20 1 1 B DC 9 1_555 C DG 3 1_555 0.085 -0.130 0.078 0.079 -20.123 2.044 8 U_DC9:DG22_B U 9 ? B 22 ? 19 1 1 B DT 10 1_555 C DA 2 1_555 -0.081 -0.146 0.026 -0.820 -15.279 2.492 9 U_DT10:DA21_B U 10 ? B 21 ? 20 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 B DT 2 1_555 C DA 10 1_555 B DG 3 1_555 C DC 9 1_555 0.352 0.233 3.230 2.478 3.789 33.555 -0.207 -0.207 3.253 6.525 -4.268 33.850 1 UU_DT2DG3:DC28DA29_BB U 2 ? B 29 ? U 3 ? B 28 ? 1 B DG 3 1_555 C DC 9 1_555 B DC 4 1_555 C DG 8 1_555 -1.173 -0.031 3.462 -6.523 -3.130 36.692 0.401 0.893 3.601 -4.913 10.240 37.374 2 UU_DG3DC4:DG27DC28_BB U 3 ? B 28 ? U 4 ? B 27 ? 1 B DC 4 1_555 C DG 8 1_555 B DG 5 1_555 C DC 7 1_555 0.501 0.301 3.258 5.195 1.622 36.928 0.254 -0.091 3.305 2.544 -8.146 37.313 3 UU_DC4DG5:DC26DG27_BB U 4 ? B 27 ? U 5 ? B 26 ? 1 B DG 5 1_555 C DC 7 1_555 B DT 6 1_555 C DA 6 1_555 -0.270 -0.347 3.037 -2.419 1.963 30.238 -1.027 0.064 3.021 3.750 4.622 30.394 4 UU_DG5DT6:DA25DC26_BB U 5 ? B 26 ? U 6 ? B 25 ? 1 B DT 6 1_555 C DA 6 1_555 B DA 7 1_555 C DT 5 1_555 0.254 -0.384 3.150 1.738 0.395 35.446 -0.687 -0.171 3.154 0.649 -2.852 35.490 5 UU_DT6DA7:DT24DA25_BB U 6 ? B 25 ? U 7 ? B 24 ? 1 B DA 7 1_555 C DT 5 1_555 B DT 8 1_555 C DA 4 1_555 0.818 -0.663 3.413 1.179 -3.935 33.633 -0.467 -1.203 3.492 -6.769 -2.027 33.876 6 UU_DA7DT8:DA23DT24_BB U 7 ? B 24 ? U 8 ? B 23 ? 1 B DT 8 1_555 C DA 4 1_555 B DC 9 1_555 C DG 3 1_555 -0.077 -0.555 3.300 3.426 2.162 38.670 -1.097 0.533 3.248 3.254 -5.156 38.873 7 UU_DT8DC9:DG22DA23_BB U 8 ? B 23 ? U 9 ? B 22 ? 1 B DC 9 1_555 C DG 3 1_555 B DT 10 1_555 C DA 2 1_555 -0.450 -0.115 3.383 0.435 5.448 32.339 -1.169 0.874 3.314 9.694 -0.774 32.785 8 UU_DC9DT10:DA21DG22_BB U 9 ? B 22 ? U 10 ? B 21 ? # _pdbx_audit_support.funding_organization ATIP-Avenir _pdbx_audit_support.country France _pdbx_audit_support.grant_number ? _pdbx_audit_support.ordinal 1 # _atom_sites.entry_id 5LXU _atom_sites.fract_transf_matrix[1][1] 0.023719 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.003591 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.030460 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.018813 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P SE # loop_ # loop_ #