HEADER OXIDOREDUCTASE 27-SEP-16 5LYC TITLE CYTOCHROME C IN COMPLEX WITH PHOSPHONATO-CALIX[6]ARENE COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYTOCHROME C ISO-1; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE (STRAIN ATCC 204508 / SOURCE 3 S288C); SOURCE 4 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 5 ORGANISM_TAXID: 559292; SOURCE 6 STRAIN: ATCC 204508 / S288C; SOURCE 7 GENE: CYC1, YJR048W, J1653; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 10 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3) KEYWDS CALIXARENE, DIMER, SURFACE-BINDING, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR M.L.RENNIE,P.B.CROWLEY REVDAT 2 25-SEP-19 5LYC 1 COMPND REMARK HET HETNAM REVDAT 2 2 1 HETSYN FORMUL LINK ATOM REVDAT 1 10-MAY-17 5LYC 0 JRNL AUTH M.L.RENNIE,A.M.DOOLAN,C.L.RASTON,P.B.CROWLEY JRNL TITL PROTEIN DIMERIZATION ON A PHOSPHONATED CALIX[6]ARENE DISC. JRNL REF ANGEW. CHEM. INT. ED. ENGL. V. 56 5517 2017 JRNL REFN ESSN 1521-3773 JRNL PMID 28407337 JRNL DOI 10.1002/ANIE.201701500 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0155 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 52.78 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 28686 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.170 REMARK 3 R VALUE (WORKING SET) : 0.169 REMARK 3 FREE R VALUE : 0.199 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.300 REMARK 3 FREE R VALUE TEST SET COUNT : 1595 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2057 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.86 REMARK 3 BIN R VALUE (WORKING SET) : 0.2990 REMARK 3 BIN FREE R VALUE SET COUNT : 115 REMARK 3 BIN FREE R VALUE : 0.3380 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1687 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 255 REMARK 3 SOLVENT ATOMS : 180 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 20.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.02 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.16000 REMARK 3 B22 (A**2) : 0.16000 REMARK 3 B33 (A**2) : -0.32000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.102 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.101 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.072 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.852 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.967 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.954 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2075 ; 0.014 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 1875 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2856 ; 1.796 ; 2.129 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4337 ; 1.016 ; 3.002 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 233 ; 5.900 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 77 ;30.538 ;24.545 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 355 ;13.821 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 7 ; 9.540 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 258 ; 0.114 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2270 ; 0.012 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 469 ; 0.010 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 878 ; 0.925 ; 1.653 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 877 ; 0.895 ; 1.651 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1099 ; 1.448 ; 2.467 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A -4 A 202 REMARK 3 ORIGIN FOR THE GROUP (A): 0.9170 -23.7650 -14.3480 REMARK 3 T TENSOR REMARK 3 T11: 0.0683 T22: 0.0286 REMARK 3 T33: 0.0175 T12: -0.0310 REMARK 3 T13: 0.0162 T23: -0.0023 REMARK 3 L TENSOR REMARK 3 L11: 2.2110 L22: 2.3555 REMARK 3 L33: 1.8377 L12: 0.0733 REMARK 3 L13: -0.0833 L23: -0.1478 REMARK 3 S TENSOR REMARK 3 S11: 0.0070 S12: -0.0329 S13: -0.1620 REMARK 3 S21: -0.2661 S22: -0.0143 S23: -0.1049 REMARK 3 S31: 0.1706 S32: -0.1019 S33: 0.0072 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B -5 B 202 REMARK 3 ORIGIN FOR THE GROUP (A): 2.3640 -29.6060 -39.9690 REMARK 3 T TENSOR REMARK 3 T11: 0.0474 T22: 0.0287 REMARK 3 T33: 0.0093 T12: 0.0263 REMARK 3 T13: -0.0017 T23: 0.0042 REMARK 3 L TENSOR REMARK 3 L11: 2.9668 L22: 2.0559 REMARK 3 L33: 1.7533 L12: 0.2771 REMARK 3 L13: -0.2992 L23: -0.1632 REMARK 3 S TENSOR REMARK 3 S11: 0.0715 S12: 0.0507 S13: 0.1456 REMARK 3 S21: 0.0830 S22: -0.0904 S23: -0.0437 REMARK 3 S31: -0.2119 S32: -0.0752 S33: 0.0189 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 5LYC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 27-SEP-16. REMARK 100 THE DEPOSITION ID IS D_1200000794. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-JUL-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9786 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30379 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 69.340 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 9.100 REMARK 200 R MERGE (I) : 0.12000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.84 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 8.70 REMARK 200 R MERGE FOR SHELL (I) : 1.90000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.74 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.22 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 3.15M AMMONIUM SULFATE 100 MM SODIUM REMARK 280 CITRATE PH 5.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 104.00500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 27.28500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 27.28500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 156.00750 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 27.28500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 27.28500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 52.00250 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 27.28500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 27.28500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 156.00750 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 27.28500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 27.28500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 52.00250 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 104.00500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4010 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11840 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -104.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A -5 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU A 103 O HOH A 301 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 27 -132.19 -128.55 REMARK 500 ASN A 70 91.80 -166.46 REMARK 500 LYS B 27 -131.51 -129.79 REMARK 500 ASN B 70 87.70 -168.65 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEC A 201 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 18 NE2 REMARK 620 2 HEC A 201 NA 89.6 REMARK 620 3 HEC A 201 NB 89.4 90.5 REMARK 620 4 HEC A 201 NC 90.1 179.1 88.7 REMARK 620 5 HEC A 201 ND 90.4 90.3 179.1 90.5 REMARK 620 6 MET A 80 SD 174.3 85.3 93.1 95.0 87.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEC B 201 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 18 NE2 REMARK 620 2 HEC B 201 NA 88.9 REMARK 620 3 HEC B 201 NB 88.2 89.7 REMARK 620 4 HEC B 201 NC 90.3 178.8 89.4 REMARK 620 5 HEC B 201 ND 91.1 90.0 179.3 90.9 REMARK 620 6 MET B 80 SD 174.2 85.6 93.7 95.3 87.0 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HEC A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 7AZ A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 7AZ B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide HEM B 201 and CYS B REMARK 800 17 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide HEM B 201 and CYS B REMARK 800 14 DBREF 5LYC A -4 103 UNP P00044 CYC1_YEAST 3 109 DBREF 5LYC B -4 103 UNP P00044 CYC1_YEAST 3 109 SEQADV 5LYC ALA A -5 UNP P00044 EXPRESSION TAG SEQADV 5LYC THR A 102 UNP P00044 CYS 108 ENGINEERED MUTATION SEQADV 5LYC ALA B -5 UNP P00044 EXPRESSION TAG SEQADV 5LYC THR B 102 UNP P00044 CYS 108 ENGINEERED MUTATION SEQRES 1 A 108 ALA GLU PHE LYS ALA GLY SER ALA LYS LYS GLY ALA THR SEQRES 2 A 108 LEU PHE LYS THR ARG CYS LEU GLN CYS HIS THR VAL GLU SEQRES 3 A 108 LYS GLY GLY PRO HIS LYS VAL GLY PRO ASN LEU HIS GLY SEQRES 4 A 108 ILE PHE GLY ARG HIS SER GLY GLN ALA GLU GLY TYR SER SEQRES 5 A 108 TYR THR ASP ALA ASN ILE LYS LYS ASN VAL LEU TRP ASP SEQRES 6 A 108 GLU ASN ASN MET SER GLU TYR LEU THR ASN PRO LYS LYS SEQRES 7 A 108 TYR ILE PRO GLY THR LYS MET ALA PHE GLY GLY LEU LYS SEQRES 8 A 108 LYS GLU LYS ASP ARG ASN ASP LEU ILE THR TYR LEU LYS SEQRES 9 A 108 LYS ALA THR GLU SEQRES 1 B 108 ALA GLU PHE LYS ALA GLY SER ALA LYS LYS GLY ALA THR SEQRES 2 B 108 LEU PHE LYS THR ARG CYS LEU GLN CYS HIS THR VAL GLU SEQRES 3 B 108 LYS GLY GLY PRO HIS LYS VAL GLY PRO ASN LEU HIS GLY SEQRES 4 B 108 ILE PHE GLY ARG HIS SER GLY GLN ALA GLU GLY TYR SER SEQRES 5 B 108 TYR THR ASP ALA ASN ILE LYS LYS ASN VAL LEU TRP ASP SEQRES 6 B 108 GLU ASN ASN MET SER GLU TYR LEU THR ASN PRO LYS LYS SEQRES 7 B 108 TYR ILE PRO GLY THR LYS MET ALA PHE GLY GLY LEU LYS SEQRES 8 B 108 LYS GLU LYS ASP ARG ASN ASP LEU ILE THR TYR LEU LYS SEQRES 9 B 108 LYS ALA THR GLU HET HEC A 201 43 HET 7AZ A 202 72 HET SO4 A 203 5 HET SO4 A 204 5 HET HEC B 201 43 HET 7AZ B 202 72 HET SO4 B 203 5 HET SO4 B 204 5 HET SO4 B 205 5 HETNAM HEC HEME C HETNAM 7AZ PHOSPHONATO-CALIX[6]ARENE HETNAM SO4 SULFATE ION FORMUL 3 HEC 2(C34 H34 FE N4 O4) FORMUL 4 7AZ 2(C42 H42 O24 P6) FORMUL 5 SO4 5(O4 S 2-) FORMUL 12 HOH *180(H2 O) HELIX 1 AA1 SER A 2 CYS A 14 1 13 HELIX 2 AA2 THR A 49 ASN A 56 1 8 HELIX 3 AA3 ASP A 60 ASN A 70 1 11 HELIX 4 AA4 ASN A 70 ILE A 75 1 6 HELIX 5 AA5 LYS A 87 GLU A 103 1 17 HELIX 6 AA6 SER B 2 CYS B 14 1 13 HELIX 7 AA7 GLY B 34 ARG B 38 5 5 HELIX 8 AA8 THR B 49 ASN B 56 1 8 HELIX 9 AA9 ASP B 60 ASN B 70 1 11 HELIX 10 AB1 ASN B 70 ILE B 75 1 6 HELIX 11 AB2 LYS B 87 THR B 102 1 16 LINK SG CYS A 14 CAB HEC A 201 1555 1555 1.82 LINK SG CYS A 17 CAC HEC A 201 1555 1555 1.93 LINK NE2 HIS A 18 FE HEC A 201 1555 1555 2.01 LINK SD MET A 80 FE HEC A 201 1555 1555 2.30 LINK SG CYS B 14 CAB HEC B 201 1555 1555 1.81 LINK SG CYS B 17 CAC HEC B 201 1555 1555 1.92 LINK NE2 HIS B 18 FE HEC B 201 1555 1555 1.99 LINK SD MET B 80 FE HEC B 201 1555 1555 2.31 SITE 1 AC1 21 ARG A 13 CYS A 14 CYS A 17 HIS A 18 SITE 2 AC1 21 VAL A 28 ILE A 35 SER A 40 GLY A 41 SITE 3 AC1 21 TYR A 46 TYR A 48 THR A 49 ASN A 52 SITE 4 AC1 21 TRP A 59 MET A 64 TYR A 67 THR A 78 SITE 5 AC1 21 LYS A 79 MET A 80 PHE A 82 HOH A 335 SITE 6 AC1 21 HOH A 341 SITE 1 AC2 13 SER A 2 ALA A 3 LYS A 4 ALA A 7 SITE 2 AC2 13 LYS A 11 TYR A 97 LYS A 100 GLU A 103 SITE 3 AC2 13 HOH A 311 HOH A 312 LYS B 4 LYS B 100 SITE 4 AC2 13 7AZ B 202 SITE 1 AC3 3 ARG A 38 HIS A 39 GLN A 42 SITE 1 AC4 2 LYS A 22 HIS A 33 SITE 1 AC5 15 LYS A 4 LYS A 100 7AZ A 202 HOH A 311 SITE 2 AC5 15 SER B 2 ALA B 3 LYS B 4 ALA B 7 SITE 3 AC5 15 LYS B 11 TYR B 97 LYS B 100 GLU B 103 SITE 4 AC5 15 HOH B 310 HOH B 315 HOH B 327 SITE 1 AC6 3 ARG B 38 HIS B 39 GLN B 42 SITE 1 AC7 4 ARG B 13 LYS B 86 HOH B 333 HOH B 353 SITE 1 AC8 3 HOH A 303 LYS B 22 HIS B 33 SITE 1 AC9 24 ARG B 13 CYS B 14 LEU B 15 GLN B 16 SITE 2 AC9 24 HIS B 18 LYS B 27 VAL B 28 GLY B 29 SITE 3 AC9 24 ILE B 35 SER B 40 GLY B 41 TYR B 46 SITE 4 AC9 24 TYR B 48 THR B 49 ASN B 52 TRP B 59 SITE 5 AC9 24 MET B 64 TYR B 67 THR B 78 LYS B 79 SITE 6 AC9 24 MET B 80 LEU B 94 HOH B 338 HOH B 339 SITE 1 AD1 23 PHE B 10 ARG B 13 LEU B 15 GLN B 16 SITE 2 AD1 23 CYS B 17 HIS B 18 VAL B 28 ILE B 35 SITE 3 AD1 23 SER B 40 GLY B 41 TYR B 46 TYR B 48 SITE 4 AD1 23 THR B 49 ASN B 52 TRP B 59 MET B 64 SITE 5 AD1 23 TYR B 67 THR B 78 LYS B 79 MET B 80 SITE 6 AD1 23 LEU B 94 HOH B 338 HOH B 339 CRYST1 54.570 54.570 208.010 90.00 90.00 90.00 P 43 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018325 0.000000 0.000000 0.00000 SCALE2 0.000000 0.018325 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004807 0.00000