HEADER STRUCTURAL PROTEIN 27-SEP-16 5LYE TITLE RE-REFINED STRUCTURE OF THE BACTERIOPHAGE T4 SHORT TAIL FIBRE PDB TITLE 2 ENTRY 1H6W CONTAINING 71 ADDITIONALLY IDENTIFIED RESIDUES COMPND MOL_ID: 1; COMPND 2 MOLECULE: GP12; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: HEAT AND PROTEASE-STABLE FRAGMENT; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ENTEROBACTERIA PHAGE T2; SOURCE 3 ORGANISM_TAXID: 10664; SOURCE 4 GENE: 12; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_VARIANT: JM109; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET21A KEYWDS STRUCTURAL PROTEIN, GENE PRODUCT 12, ADHESIN, FIBROUS PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.J.VAN RAAIJ,N.M.I.TAYLOR,P.G.LEIMAN REVDAT 5 08-MAY-24 5LYE 1 REMARK REVDAT 4 13-NOV-19 5LYE 1 REMARK REVDAT 3 04-APR-18 5LYE 1 JRNL REVDAT 2 14-FEB-18 5LYE 1 JRNL REVDAT 1 17-JAN-18 5LYE 0 SPRSDE 17-JAN-18 5LYE 1H6W JRNL AUTH N.M.I.TAYLOR,M.J.VAN RAAIJ,P.G.LEIMAN JRNL TITL CONTRACTILE INJECTION SYSTEMS OF BACTERIOPHAGES AND RELATED JRNL TITL 2 SYSTEMS. JRNL REF MOL. MICROBIOL. V. 108 6 2018 JRNL REFN ESSN 1365-2958 JRNL PMID 29405518 JRNL DOI 10.1111/MMI.13921 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH N.M.TAYLOR,N.S.PROKHOROV,R.C.GUERRERO-FERREIRA,M.M.SHNEIDER, REMARK 1 AUTH 2 C.BROWNING,K.N.GOLDIE,H.STAHLBERG,P.G.LEIMAN REMARK 1 TITL STRUCTURE OF THE T4 BASEPLATE AND ITS FUNCTION IN TRIGGERING REMARK 1 TITL 2 SHEATH CONTRACTION. REMARK 1 REF NATURE V. 533 346 2016 REMARK 1 REFN ESSN 1476-4687 REMARK 1 PMID 27193680 REMARK 1 DOI 10.1038/NATURE17971 REMARK 1 REFERENCE 2 REMARK 1 AUTH M.J.VAN RAAIJ,G.SCHOEHN,M.R.BURDA,S.MILLER REMARK 1 TITL CRYSTAL STRUCTURE OF A HEAT AND PROTEASE-STABLE PART OF THE REMARK 1 TITL 2 BACTERIOPHAGE T4 SHORT TAIL FIBRE. REMARK 1 REF J. MOL. BIOL. V. 314 1137 2001 REMARK 1 REFN ISSN 0022-2836 REMARK 1 PMID 11743729 REMARK 1 REFERENCE 3 REMARK 1 AUTH M.J.VAN RAAIJ,G.SCHOEHN,M.JAQUINOD,K.ASHMAN,M.R.BURDA, REMARK 1 AUTH 2 S.MILLER REMARK 1 TITL IDENTIFICATION AND CRYSTALLISATION OF A HEAT- AND REMARK 1 TITL 2 PROTEASE-STABLE FRAGMENT OF THE BACTERIOPHAGE T4 SHORT TAIL REMARK 1 TITL 3 FIBRE. REMARK 1 REF BIOL. CHEM. V. 382 1049 2001 REMARK 1 REFN ISSN 1431-6730 REMARK 1 PMID 11530935 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0155 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.80 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 91.5 REMARK 3 NUMBER OF REFLECTIONS : 27229 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.185 REMARK 3 R VALUE (WORKING SET) : 0.183 REMARK 3 FREE R VALUE : 0.215 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1452 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1348 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 64.37 REMARK 3 BIN R VALUE (WORKING SET) : 0.1860 REMARK 3 BIN FREE R VALUE SET COUNT : 79 REMARK 3 BIN FREE R VALUE : 0.2060 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1734 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 7 REMARK 3 SOLVENT ATOMS : 226 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 16.12 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.98 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.17000 REMARK 3 B22 (A**2) : 0.17000 REMARK 3 B33 (A**2) : -0.55000 REMARK 3 B12 (A**2) : 0.08000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.116 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.115 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.064 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.129 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.936 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.901 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1762 ; 0.017 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 1642 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2393 ; 1.603 ; 1.939 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3764 ; 1.000 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 233 ; 7.910 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 70 ;40.537 ;24.429 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 277 ;13.033 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 11 ;14.032 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 282 ; 0.104 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2048 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 399 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 941 ; 2.785 ; 3.758 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 940 ; 2.785 ; 3.760 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1171 ; 4.211 ; 5.614 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1172 ; 4.210 ; 5.613 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 820 ; 2.701 ; 4.015 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 813 ; 2.690 ; 4.018 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1215 ; 4.316 ; 5.942 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 1956 ; 6.863 ;44.814 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 1903 ; 6.578 ;44.607 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5LYE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 28-SEP-16. REMARK 100 THE DEPOSITION ID IS D_1200001578. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JUN-00 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 5.60 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.933 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28682 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 19.800 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.3 REMARK 200 DATA REDUNDANCY : 7.300 REMARK 200 R MERGE (I) : 0.05700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 68.7 REMARK 200 DATA REDUNDANCY IN SHELL : 5.30 REMARK 200 R MERGE FOR SHELL (I) : 0.15400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SIRAS REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: BARS WITH HEXAGONAL CROSS-SECTION REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.80 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15-25 % (V/V) 2-METHYLPROPANE-2-OL REMARK 280 (TERTIARY BUTANOL), 100 MM SODIUM CITRATE PH 5.6 10% (V/V) REMARK 280 GLYCEROL, 10 MM HEPES, 150 MM SODIUM CHLORIDE, PH 5.60, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 3 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 28340 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 29130 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -188.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 25.62850 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 44.38986 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 -25.62850 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 44.38986 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 CL CL A 601 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 865 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 899 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LEU A 85 REMARK 465 SER A 86 REMARK 465 TYR A 87 REMARK 465 PRO A 88 REMARK 465 ASN A 89 REMARK 465 ARG A 132 REMARK 465 VAL A 133 REMARK 465 SER A 134 REMARK 465 THR A 135 REMARK 465 GLU A 136 REMARK 465 SER A 137 REMARK 465 SER A 138 REMARK 465 ASN A 139 REMARK 465 GLY A 140 REMARK 465 VAL A 141 REMARK 465 ILE A 142 REMARK 465 LYS A 143 REMARK 465 ILE A 144 REMARK 465 SER A 145 REMARK 465 SER A 146 REMARK 465 LEU A 147 REMARK 465 PRO A 148 REMARK 465 GLN A 149 REMARK 465 ALA A 150 REMARK 465 LEU A 151 REMARK 465 ALA A 152 REMARK 465 GLY A 153 REMARK 465 ALA A 154 REMARK 465 ASP A 155 REMARK 465 ASP A 156 REMARK 465 THR A 157 REMARK 465 THR A 158 REMARK 465 ALA A 159 REMARK 465 MET A 160 REMARK 465 THR A 161 REMARK 465 PRO A 162 REMARK 465 LEU A 163 REMARK 465 LYS A 164 REMARK 465 THR A 165 REMARK 465 GLN A 166 REMARK 465 GLN A 167 REMARK 465 LEU A 168 REMARK 465 ALA A 169 REMARK 465 VAL A 170 REMARK 465 LYS A 171 REMARK 465 LEU A 172 REMARK 465 ILE A 173 REMARK 465 ALA A 174 REMARK 465 GLN A 175 REMARK 465 ILE A 176 REMARK 465 ALA A 177 REMARK 465 PRO A 178 REMARK 465 SER A 179 REMARK 465 LYS A 180 REMARK 465 ASN A 181 REMARK 465 ALA A 182 REMARK 465 ALA A 183 REMARK 465 THR A 184 REMARK 465 GLU A 185 REMARK 465 SER A 186 REMARK 465 GLU A 187 REMARK 465 GLN A 188 REMARK 465 GLY A 189 REMARK 465 VAL A 190 REMARK 465 ILE A 191 REMARK 465 GLN A 192 REMARK 465 LEU A 193 REMARK 465 ALA A 194 REMARK 465 THR A 195 REMARK 465 VAL A 196 REMARK 465 ALA A 197 REMARK 465 GLN A 198 REMARK 465 ALA A 199 REMARK 465 ARG A 200 REMARK 465 GLN A 201 REMARK 465 GLY A 202 REMARK 465 THR A 203 REMARK 465 LEU A 204 REMARK 465 ARG A 205 REMARK 465 GLU A 206 REMARK 465 GLY A 207 REMARK 465 TYR A 208 REMARK 465 ALA A 209 REMARK 465 ILE A 210 REMARK 465 SER A 211 REMARK 465 SER A 518 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 817 O HOH A 878 2.14 REMARK 500 O HOH A 753 O HOH A 903 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 338 CB - CG - OD2 ANGL. DEV. = -6.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 128 -65.75 -120.61 REMARK 500 TYR A 213 -62.29 -139.18 REMARK 500 GLU A 223 -64.45 92.77 REMARK 500 ASP A 286 45.51 -77.80 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 926 DISTANCE = 7.43 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 603 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1H6W RELATED DB: PDB REMARK 900 RELATED ID: EMD-3374 RELATED DB: EMDB REMARK 900 RELATED ID: 5IV5 RELATED DB: PDB REMARK 900 CHAINS O, P, Q REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE SEQUENCE OF THE SHORT TAIL FIBRE OF REMARK 999 BACTERIOPHAGE T4D HAS NOT BEEN DEPOSITED DBREF 5LYE A 85 527 PDB 5LYE 5LYE 85 527 SEQRES 1 A 322 LEU SER TYR PRO ASN ALA THR GLU SER VAL TYR GLY LEU SEQRES 2 A 322 THR ARG TYR SER THR ASN ASP GLU ALA ILE ALA GLY VAL SEQRES 3 A 322 ASN ASN GLU SER SER ILE THR PRO ALA LYS PHE THR VAL SEQRES 4 A 322 ALA LEU ASN ASN VAL PHE GLU THR ARG VAL SER THR GLU SEQRES 5 A 322 SER SER ASN GLY VAL ILE LYS ILE SER SER LEU PRO GLN SEQRES 6 A 322 ALA LEU ALA GLY ALA ASP ASP THR THR ALA MET THR PRO SEQRES 7 A 322 LEU LYS THR GLN GLN LEU ALA VAL LYS LEU ILE ALA GLN SEQRES 8 A 322 ILE ALA PRO SER LYS ASN ALA ALA THR GLU SER GLU GLN SEQRES 9 A 322 GLY VAL ILE GLN LEU ALA THR VAL ALA GLN ALA ARG GLN SEQRES 10 A 322 GLY THR LEU ARG GLU GLY TYR ALA ILE SER PRO TYR THR SEQRES 11 A 322 PHE MET ASN SER THR ALA THR GLU GLU TYR LYS GLY VAL SEQRES 12 A 322 ILE LYS LEU GLY THR GLN SER GLU VAL ASN SER ASN ASN SEQRES 13 A 322 ALA SER VAL ALA VAL THR GLY ALA THR LEU ASN GLY ARG SEQRES 14 A 322 GLY SER THR THR SER MET ARG GLY VAL VAL LYS LEU THR SEQRES 15 A 322 THR THR ALA GLY SER GLN SER GLY GLY ASP ALA SER SER SEQRES 16 A 322 ALA LEU ALA TRP ASN ALA ASP VAL ILE HIS GLN ARG GLY SEQRES 17 A 322 GLY GLN THR ILE ASN GLY THR LEU ARG ILE ASN ASN THR SEQRES 18 A 322 LEU THR ILE ALA SER GLY GLY ALA ASN ILE THR GLY THR SEQRES 19 A 322 VAL ASN MET THR GLY GLY TYR ILE GLN GLY LYS ARG VAL SEQRES 20 A 322 VAL THR GLN ASN GLU ILE ASP ARG THR ILE PRO VAL GLY SEQRES 21 A 322 ALA ILE MET MET TRP ALA ALA ASP SER LEU PRO SER ASP SEQRES 22 A 322 ALA TRP ARG PHE CYS HIS GLY GLY THR VAL SER ALA SER SEQRES 23 A 322 ASP CYS PRO LEU TYR ALA SER ARG ILE GLY THR ARG TYR SEQRES 24 A 322 GLY GLY SER SER SER ASN PRO GLY LEU PRO ASP MET ARG SEQRES 25 A 322 SER LEU ASN TYR ILE ILE LYS VAL LYS GLU HET CL A 601 1 HET CL A 602 1 HET SO4 A 603 5 HETNAM CL CHLORIDE ION HETNAM SO4 SULFATE ION FORMUL 2 CL 2(CL 1-) FORMUL 4 SO4 O4 S 2- FORMUL 5 HOH *226(H2 O) HELIX 1 AA1 THR A 102 ALA A 108 1 7 HELIX 2 AA2 THR A 117 ASN A 126 1 10 HELIX 3 AA3 THR A 232 SER A 238 1 7 HELIX 4 AA4 THR A 246 ARG A 253 1 8 HELIX 5 AA5 THR A 333 ASN A 335 5 3 HELIX 6 AA6 GLU A 336 ILE A 341 1 6 HELIX 7 AA7 CYS A 372 GLY A 380 1 9 SHEET 1 AA1 2 LYS A 264 THR A 266 0 SHEET 2 AA1 2 SER A 279 LEU A 281 1 O ALA A 280 N LYS A 264 SHEET 1 AA2 2 TYR A 325 ILE A 326 0 SHEET 2 AA2 2 LYS A 329 ARG A 330 -1 O LYS A 329 N ILE A 326 SHEET 1 AA3 3 ILE A 346 TRP A 349 0 SHEET 2 AA3 3 ASN A 520 LYS A 524 -1 O ILE A 522 N MET A 347 SHEET 3 AA3 3 TRP A 359 PHE A 361 -1 N ARG A 360 O ILE A 523 SITE 1 AC1 1 SER A 387 SITE 1 AC2 5 ASN A 297 ARG A 360 PHE A 361 HOH A 806 SITE 2 AC2 5 HOH A 824 SITE 1 AC3 3 SER A 387 SER A 388 HOH A 775 CRYST1 51.257 51.257 249.491 90.00 90.00 120.00 P 3 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019510 0.011264 0.000000 0.00000 SCALE2 0.000000 0.022528 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004008 0.00000