HEADER CHAPERONE 28-SEP-16 5LYN TITLE STRUCTURE OF THE TPR DOMAIN OF SGT2 IN COMPLEX WITH YEAST SSA1 PEPTIDE TITLE 2 FRAGMENT COMPND MOL_ID: 1; COMPND 2 MOLECULE: SMALL GLUTAMINE-RICH TETRATRICOPEPTIDE REPEAT-CONTAINING COMPND 3 PROTEIN 2; COMPND 4 CHAIN: A, B; COMPND 5 SYNONYM: SGT/UBP,VIRAL PROTEIN U-BINDING PROTEIN; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: PRO-THR-VAL-GLU-GLU-VAL-ASP; COMPND 9 CHAIN: C, D; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 GENE: SGT2, YOR007C, UNF346; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 11 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 12 ORGANISM_TAXID: 4932 KEYWDS CHAPERONE EXPDTA X-RAY DIFFRACTION AUTHOR E.M.KRYSZTOFINSKA,N.J.EVANS,A.THAPALIYA,J.W.MURRAY,R.M.L.MORGAN, AUTHOR 2 S.MARTINEZ-LUMBRERAS,R.L.ISAACSON REVDAT 3 17-JAN-24 5LYN 1 JRNL LINK REVDAT 2 08-NOV-17 5LYN 1 JRNL REVDAT 1 25-OCT-17 5LYN 0 JRNL AUTH E.M.KRYSZTOFINSKA,N.J.EVANS,A.THAPALIYA,J.W.MURRAY, JRNL AUTH 2 R.M.L.MORGAN,S.MARTINEZ-LUMBRERAS,R.L.ISAACSON JRNL TITL STRUCTURE AND INTERACTIONS OF THE TPR DOMAIN OF SGT2 WITH JRNL TITL 2 YEAST CHAPERONES AND YBR137WP. JRNL REF FRONT MOL BIOSCI V. 4 68 2017 JRNL REFN ESSN 2296-889X JRNL PMID 29075633 JRNL DOI 10.3389/FMOLB.2017.00068 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.10.1_2155 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.59 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 19279 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.160 REMARK 3 R VALUE (WORKING SET) : 0.158 REMARK 3 FREE R VALUE : 0.203 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.810 REMARK 3 FREE R VALUE TEST SET COUNT : 928 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 33.5905 - 3.8243 0.99 2676 140 0.1375 0.1777 REMARK 3 2 3.8243 - 3.0361 0.99 2629 128 0.1609 0.2021 REMARK 3 3 3.0361 - 2.6525 0.99 2644 123 0.1721 0.2060 REMARK 3 4 2.6525 - 2.4100 0.99 2599 153 0.1690 0.2365 REMARK 3 5 2.4100 - 2.2373 0.99 2616 119 0.1611 0.2008 REMARK 3 6 2.2373 - 2.1054 0.99 2570 154 0.1604 0.2153 REMARK 3 7 2.1054 - 2.0000 0.98 2617 111 0.1845 0.2476 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.210 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.370 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 25.49 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.78 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 2213 REMARK 3 ANGLE : 0.680 2971 REMARK 3 CHIRALITY : 0.041 319 REMARK 3 PLANARITY : 0.005 389 REMARK 3 DIHEDRAL : 15.898 1384 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 93 THROUGH 114 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.1454 12.7452 -7.7343 REMARK 3 T TENSOR REMARK 3 T11: 0.2178 T22: 0.3905 REMARK 3 T33: 0.2115 T12: -0.0982 REMARK 3 T13: 0.0192 T23: -0.0458 REMARK 3 L TENSOR REMARK 3 L11: 1.0429 L22: 0.3438 REMARK 3 L33: 1.4787 L12: -0.5001 REMARK 3 L13: 0.6272 L23: -0.6626 REMARK 3 S TENSOR REMARK 3 S11: -0.0782 S12: 0.3598 S13: -0.0578 REMARK 3 S21: -0.1208 S22: 0.0681 S23: -0.1575 REMARK 3 S31: -0.5034 S32: 0.6587 S33: -0.0382 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 115 THROUGH 151 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.7030 6.8240 -8.5038 REMARK 3 T TENSOR REMARK 3 T11: 0.1491 T22: 0.2025 REMARK 3 T33: 0.1533 T12: 0.0123 REMARK 3 T13: -0.0014 T23: -0.0287 REMARK 3 L TENSOR REMARK 3 L11: 0.4287 L22: 0.0868 REMARK 3 L33: 1.2694 L12: 0.3693 REMARK 3 L13: 0.0119 L23: -0.0788 REMARK 3 S TENSOR REMARK 3 S11: 0.0162 S12: 0.0907 S13: -0.1326 REMARK 3 S21: -0.1338 S22: 0.1414 S23: -0.1740 REMARK 3 S31: -0.0661 S32: 0.3293 S33: 0.0004 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 152 THROUGH 203 ) REMARK 3 ORIGIN FOR THE GROUP (A): -17.0392 9.1490 -22.2690 REMARK 3 T TENSOR REMARK 3 T11: 0.1684 T22: 0.1307 REMARK 3 T33: 0.1643 T12: -0.0075 REMARK 3 T13: -0.0013 T23: -0.0070 REMARK 3 L TENSOR REMARK 3 L11: 0.4293 L22: 0.6686 REMARK 3 L33: 0.8901 L12: -0.2081 REMARK 3 L13: -0.1114 L23: -0.0220 REMARK 3 S TENSOR REMARK 3 S11: 0.0412 S12: 0.0057 S13: 0.1077 REMARK 3 S21: -0.0145 S22: -0.0053 S23: 0.0277 REMARK 3 S31: -0.0319 S32: -0.0702 S33: -0.0000 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 204 THROUGH 225 ) REMARK 3 ORIGIN FOR THE GROUP (A): -19.6834 0.1949 -32.5503 REMARK 3 T TENSOR REMARK 3 T11: 0.3140 T22: 0.2553 REMARK 3 T33: 0.2722 T12: -0.0196 REMARK 3 T13: -0.0081 T23: 0.0050 REMARK 3 L TENSOR REMARK 3 L11: 0.1752 L22: 0.2202 REMARK 3 L33: 0.5262 L12: 0.0198 REMARK 3 L13: -0.0116 L23: 0.0070 REMARK 3 S TENSOR REMARK 3 S11: 0.1328 S12: 0.8404 S13: -0.0853 REMARK 3 S21: -0.2591 S22: 0.2125 S23: -0.2461 REMARK 3 S31: 0.0740 S32: -0.1424 S33: 0.0076 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 93 THROUGH 114 ) REMARK 3 ORIGIN FOR THE GROUP (A): -6.9663 3.7912 -49.5513 REMARK 3 T TENSOR REMARK 3 T11: 0.2348 T22: 0.2498 REMARK 3 T33: 0.2010 T12: -0.0614 REMARK 3 T13: 0.0274 T23: -0.0136 REMARK 3 L TENSOR REMARK 3 L11: 0.3543 L22: 0.4391 REMARK 3 L33: 0.0824 L12: -0.1489 REMARK 3 L13: 0.0725 L23: 0.0386 REMARK 3 S TENSOR REMARK 3 S11: -0.1168 S12: -0.1809 S13: -0.2485 REMARK 3 S21: 0.2378 S22: 0.0560 S23: 0.2875 REMARK 3 S31: 0.2737 S32: -0.4352 S33: -0.0750 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 115 THROUGH 185 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.5293 11.4478 -44.3841 REMARK 3 T TENSOR REMARK 3 T11: 0.1441 T22: 0.1385 REMARK 3 T33: 0.1419 T12: -0.0029 REMARK 3 T13: 0.0081 T23: 0.0082 REMARK 3 L TENSOR REMARK 3 L11: 0.1545 L22: 0.7409 REMARK 3 L33: 1.9436 L12: -0.1829 REMARK 3 L13: 0.3998 L23: 0.4685 REMARK 3 S TENSOR REMARK 3 S11: -0.0451 S12: 0.0610 S13: 0.0223 REMARK 3 S21: -0.0297 S22: 0.0466 S23: -0.0148 REMARK 3 S31: 0.0680 S32: 0.0576 S33: -0.0001 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 186 THROUGH 205 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.8466 19.9426 -29.3257 REMARK 3 T TENSOR REMARK 3 T11: 0.1761 T22: 0.2204 REMARK 3 T33: 0.1817 T12: -0.0239 REMARK 3 T13: -0.0212 T23: 0.0002 REMARK 3 L TENSOR REMARK 3 L11: 1.7508 L22: 0.0814 REMARK 3 L33: 0.8086 L12: -0.1748 REMARK 3 L13: -1.0208 L23: 0.2348 REMARK 3 S TENSOR REMARK 3 S11: 0.4112 S12: -0.3781 S13: 0.3737 REMARK 3 S21: 0.1875 S22: -0.0452 S23: -0.1449 REMARK 3 S31: -0.2494 S32: 0.0548 S33: 0.0914 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 206 THROUGH 225 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.5802 17.7372 -24.9031 REMARK 3 T TENSOR REMARK 3 T11: 0.1703 T22: 0.2129 REMARK 3 T33: 0.3423 T12: -0.0099 REMARK 3 T13: -0.0621 T23: 0.0138 REMARK 3 L TENSOR REMARK 3 L11: 0.0225 L22: 0.1546 REMARK 3 L33: 0.0171 L12: 0.0327 REMARK 3 L13: -0.0014 L23: -0.0716 REMARK 3 S TENSOR REMARK 3 S11: -0.0236 S12: 0.0668 S13: -0.0205 REMARK 3 S21: 0.0928 S22: 0.1424 S23: -0.2115 REMARK 3 S31: 0.2125 S32: -0.1454 S33: -0.0001 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 1 THROUGH 7 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.9148 6.2816 -34.8933 REMARK 3 T TENSOR REMARK 3 T11: 0.4835 T22: 0.4975 REMARK 3 T33: 0.4435 T12: 0.1061 REMARK 3 T13: -0.0103 T23: 0.0255 REMARK 3 L TENSOR REMARK 3 L11: 0.0152 L22: -0.0196 REMARK 3 L33: 0.0023 L12: 0.0183 REMARK 3 L13: 0.0217 L23: -0.0049 REMARK 3 S TENSOR REMARK 3 S11: 0.3234 S12: -0.0510 S13: 0.1256 REMARK 3 S21: -0.2526 S22: 0.0588 S23: 0.1615 REMARK 3 S31: -0.0427 S32: -0.1982 S33: -0.0002 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 1 THROUGH 7 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.3175 2.5042 -20.3019 REMARK 3 T TENSOR REMARK 3 T11: 0.4887 T22: 0.6665 REMARK 3 T33: 0.4554 T12: 0.0250 REMARK 3 T13: -0.0629 T23: -0.0615 REMARK 3 L TENSOR REMARK 3 L11: 0.0237 L22: 0.0072 REMARK 3 L33: 0.0329 L12: 0.0137 REMARK 3 L13: 0.0159 L23: -0.0228 REMARK 3 S TENSOR REMARK 3 S11: 0.1833 S12: 0.3908 S13: -0.0335 REMARK 3 S21: -0.2096 S22: -0.1522 S23: -0.2846 REMARK 3 S31: -0.4100 S32: -0.0686 S33: -0.0001 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: (CHAIN A AND RESSEQ 93:133) REMARK 3 SELECTION : (CHAIN B AND RESSEQ 93:133) REMARK 3 ATOM PAIRS NUMBER : 390 REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5LYN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 28-SEP-16. REMARK 100 THE DEPOSITION ID IS D_1200001594. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-JUL-16 REMARK 200 TEMPERATURE (KELVIN) : 298.15 REMARK 200 PH : 6.6-8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.92 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.5.23 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19295 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 33.590 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 6.600 REMARK 200 R MERGE (I) : 0.08400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.05 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.40 REMARK 200 R MERGE FOR SHELL (I) : 0.39200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2VYI REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.16 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.33 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M ZINC ACETATE, 30% PEG 3350, PH REMARK 280 7.2, BATCH MODE, TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 30.54500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3560 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14920 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -202.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 157 CD CE NZ REMARK 470 LEU B 225 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OXT LEU A 225 O HOH A 401 2.17 REMARK 500 O HOH A 403 O HOH A 454 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 185 70.41 -116.08 REMARK 500 LYS B 185 68.06 -117.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY A 93 N REMARK 620 2 GLY A 93 O 80.6 REMARK 620 3 ASP A 117 OD2 56.4 71.4 REMARK 620 4 HOH A 406 O 53.8 77.6 6.7 REMARK 620 5 GLU B 119 OE1 56.3 24.4 57.8 62.6 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 97 OE1 REMARK 620 2 GLU A 97 OE2 51.4 REMARK 620 3 HOH A 454 O 57.0 31.8 REMARK 620 4 ASP B 117 OD2 54.7 30.7 2.3 REMARK 620 5 HOH B 408 O 56.8 33.2 1.5 2.8 REMARK 620 6 HOH B 433 O 54.0 30.6 3.0 0.7 3.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 303 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LYS A 124 NZ REMARK 620 2 GLU A 127 OE1 101.0 REMARK 620 3 HOH A 463 O 111.4 106.9 REMARK 620 4 GLU B 151 OE2 26.4 83.9 98.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 302 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 151 OE1 REMARK 620 2 GLU A 151 OE2 53.3 REMARK 620 3 LYS B 124 NZ 18.1 57.3 REMARK 620 4 GLU B 127 OE1 17.8 59.9 3.0 REMARK 620 5 GLU B 127 OE2 15.9 58.1 2.8 2.2 REMARK 620 6 HOH B 441 O 20.5 59.3 2.7 3.4 4.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 305 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 166 OD2 REMARK 620 2 HOH A 438 O 105.3 REMARK 620 3 ASP B 202 OD2 101.3 122.2 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 302 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 200 OE2 REMARK 620 2 HOH A 461 O 99.1 REMARK 620 3 HOH A 462 O 100.1 91.8 REMARK 620 4 GLU B 200 OE1 98.1 152.0 106.8 REMARK 620 5 GLU B 200 OE2 148.4 101.0 103.4 55.0 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 304 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 401 O REMARK 620 2 HOH B 425 O 115.7 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 303 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 448 O REMARK 620 2 GLY B 93 N 151.9 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN D 101 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PRO D 1 N REMARK 620 2 PRO D 1 O 75.0 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN D 101 DBREF 5LYN A 96 225 UNP Q12118 SGT2_YEAST 96 225 DBREF 5LYN B 96 225 UNP Q12118 SGT2_YEAST 96 225 DBREF 5LYN C 1 7 PDB 5LYN 5LYN 1 7 DBREF 5LYN D 1 7 PDB 5LYN 5LYN 1 7 SEQADV 5LYN GLY A 93 UNP Q12118 EXPRESSION TAG SEQADV 5LYN SER A 94 UNP Q12118 EXPRESSION TAG SEQADV 5LYN MET A 95 UNP Q12118 EXPRESSION TAG SEQADV 5LYN GLY B 93 UNP Q12118 EXPRESSION TAG SEQADV 5LYN SER B 94 UNP Q12118 EXPRESSION TAG SEQADV 5LYN MET B 95 UNP Q12118 EXPRESSION TAG SEQRES 1 A 133 GLY SER MET ALA GLU THR LYS ALA LYS ALA GLU ASP LEU SEQRES 2 A 133 LYS MET GLN GLY ASN LYS ALA MET ALA ASN LYS ASP TYR SEQRES 3 A 133 GLU LEU ALA ILE ASN LYS TYR THR GLU ALA ILE LYS VAL SEQRES 4 A 133 LEU PRO THR ASN ALA ILE TYR TYR ALA ASN ARG ALA ALA SEQRES 5 A 133 ALA HIS SER SER LEU LYS GLU TYR ASP GLN ALA VAL LYS SEQRES 6 A 133 ASP ALA GLU SER ALA ILE SER ILE ASP PRO SER TYR PHE SEQRES 7 A 133 ARG GLY TYR SER ARG LEU GLY PHE ALA LYS TYR ALA GLN SEQRES 8 A 133 GLY LYS PRO GLU GLU ALA LEU GLU ALA TYR LYS LYS VAL SEQRES 9 A 133 LEU ASP ILE GLU GLY ASP ASN ALA THR GLU ALA MET LYS SEQRES 10 A 133 ARG ASP TYR GLU SER ALA LYS LYS LYS VAL GLU GLN SER SEQRES 11 A 133 LEU ASN LEU SEQRES 1 B 133 GLY SER MET ALA GLU THR LYS ALA LYS ALA GLU ASP LEU SEQRES 2 B 133 LYS MET GLN GLY ASN LYS ALA MET ALA ASN LYS ASP TYR SEQRES 3 B 133 GLU LEU ALA ILE ASN LYS TYR THR GLU ALA ILE LYS VAL SEQRES 4 B 133 LEU PRO THR ASN ALA ILE TYR TYR ALA ASN ARG ALA ALA SEQRES 5 B 133 ALA HIS SER SER LEU LYS GLU TYR ASP GLN ALA VAL LYS SEQRES 6 B 133 ASP ALA GLU SER ALA ILE SER ILE ASP PRO SER TYR PHE SEQRES 7 B 133 ARG GLY TYR SER ARG LEU GLY PHE ALA LYS TYR ALA GLN SEQRES 8 B 133 GLY LYS PRO GLU GLU ALA LEU GLU ALA TYR LYS LYS VAL SEQRES 9 B 133 LEU ASP ILE GLU GLY ASP ASN ALA THR GLU ALA MET LYS SEQRES 10 B 133 ARG ASP TYR GLU SER ALA LYS LYS LYS VAL GLU GLN SER SEQRES 11 B 133 LEU ASN LEU SEQRES 1 C 7 PRO THR VAL GLU GLU VAL ASP SEQRES 1 D 7 PRO THR VAL GLU GLU VAL ASP HET ZN A 301 1 HET ZN A 302 1 HET ZN A 303 1 HET ZN A 304 1 HET ZN A 305 1 HET ZN B 301 1 HET ZN B 302 1 HET ZN B 303 1 HET ZN D 101 1 HETNAM ZN ZINC ION FORMUL 5 ZN 9(ZN 2+) FORMUL 14 HOH *148(H2 O) HELIX 1 AA1 SER A 94 ASN A 115 1 22 HELIX 2 AA2 ASP A 117 LEU A 132 1 16 HELIX 3 AA3 ASN A 135 LEU A 149 1 15 HELIX 4 AA4 GLU A 151 ASP A 166 1 16 HELIX 5 AA5 TYR A 169 GLN A 183 1 15 HELIX 6 AA6 LYS A 185 GLY A 201 1 17 HELIX 7 AA7 ASP A 202 ALA A 204 5 3 HELIX 8 AA8 THR A 205 ASN A 224 1 20 HELIX 9 AA9 SER B 94 ASN B 115 1 22 HELIX 10 AB1 ASP B 117 LEU B 132 1 16 HELIX 11 AB2 ASN B 135 LEU B 149 1 15 HELIX 12 AB3 GLU B 151 ASP B 166 1 16 HELIX 13 AB4 TYR B 169 GLN B 183 1 15 HELIX 14 AB5 LYS B 185 GLY B 201 1 17 HELIX 15 AB6 ASP B 202 ALA B 204 5 3 HELIX 16 AB7 THR B 205 LEU B 225 1 21 LINK N GLY A 93 ZN ZN A 301 1555 2555 2.42 LINK O GLY A 93 ZN ZN A 301 1555 2555 2.39 LINK OE1 GLU A 97 ZN ZN B 301 1555 2554 2.62 LINK OE2 GLU A 97 ZN ZN B 301 1555 2554 2.43 LINK OD2 ASP A 117 ZN ZN A 301 1555 1555 2.33 LINK NZ LYS A 124 ZN ZN A 303 1555 1555 2.12 LINK OE1 GLU A 127 ZN ZN A 303 1555 1555 2.11 LINK OE1 GLU A 151 ZN ZN B 302 1555 1556 2.69 LINK OE2 GLU A 151 ZN ZN B 302 1555 1556 1.99 LINK OD2 ASP A 166 ZN ZN A 305 1555 1555 1.92 LINK OE2 GLU A 200 ZN ZN A 302 1555 1555 2.00 LINK ZN ZN A 301 O HOH A 406 1555 2545 2.60 LINK ZN ZN A 301 OE1 GLU B 119 1554 1555 2.26 LINK ZN ZN A 302 O HOH A 461 1555 1555 2.11 LINK ZN ZN A 302 O HOH A 462 1555 1555 2.13 LINK ZN ZN A 302 OE1 GLU B 200 1555 1555 2.57 LINK ZN ZN A 302 OE2 GLU B 200 1555 1555 2.09 LINK ZN ZN A 303 O HOH A 463 1555 1555 2.03 LINK ZN ZN A 303 OE2 GLU B 151 1554 1555 2.07 LINK ZN ZN A 304 O HOH A 401 1555 1555 2.02 LINK ZN ZN A 304 O HOH B 425 1555 2444 2.24 LINK ZN ZN A 305 O HOH A 438 1555 1555 2.33 LINK ZN ZN A 305 OD2 ASP B 202 1555 1555 2.18 LINK O HOH A 448 ZN ZN B 303 1454 1555 2.47 LINK O HOH A 454 ZN ZN B 301 2544 1555 2.10 LINK N GLY B 93 ZN ZN B 303 1555 1555 2.54 LINK OD2 ASP B 117 ZN ZN B 301 1555 1555 2.20 LINK NZ LYS B 124 ZN ZN B 302 1555 1555 2.12 LINK OE1 GLU B 127 ZN ZN B 302 1555 1555 2.07 LINK OE2 GLU B 127 ZN ZN B 302 1555 1555 2.63 LINK ZN ZN B 301 O HOH B 408 1555 1555 1.92 LINK ZN ZN B 301 O HOH B 433 1555 1555 2.14 LINK ZN ZN B 302 O HOH B 441 1555 1555 2.06 LINK N PRO D 1 ZN ZN D 101 1555 1555 2.27 LINK O PRO D 1 ZN ZN D 101 1555 1555 2.24 SITE 1 AC1 2 ASP A 117 GLU B 119 SITE 1 AC2 4 GLU A 200 HOH A 461 HOH A 462 GLU B 200 SITE 1 AC3 4 LYS A 124 GLU A 127 HOH A 463 GLU B 151 SITE 1 AC4 2 LEU A 225 HOH A 401 SITE 1 AC5 5 ASP A 166 HOH A 438 ASP B 202 HOH B 438 SITE 2 AC5 5 HOH B 463 SITE 1 AC6 4 GLU A 119 ASP B 117 HOH B 408 HOH B 433 SITE 1 AC7 4 GLU A 151 LYS B 124 GLU B 127 HOH B 441 SITE 1 AC8 2 HOH A 448 GLY B 93 SITE 1 AC9 1 PRO D 1 CRYST1 45.490 61.090 55.250 90.00 108.81 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021983 0.000000 0.007488 0.00000 SCALE2 0.000000 0.016369 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019121 0.00000