HEADER SIGNALING PROTEIN 03-OCT-16 5M07 TITLE CRYSTAL STRUCTURE OF MYCOBACTERIUM TUBERCULOSIS PKNI KINASE DOMAIN, TITLE 2 C20A MUTANT COMPND MOL_ID: 1; COMPND 2 MOLECULE: SERINE/THREONINE-PROTEIN KINASE PKNI; COMPND 3 CHAIN: A, B; COMPND 4 EC: 2.7.11.1; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS H37RV; SOURCE 3 ORGANISM_TAXID: 83332; SOURCE 4 GENE: PKNI, RV2914C, MTCY338.02C; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS TUBERCULOSIS, KINASE, SIGNALLING, TRANSFERASE, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.N.LISA,T.WAGNER,M.ALEXANDRE,N.BARILONE,B.RAYNAL,P.M.ALZARI, AUTHOR 2 M.BELLINZONI REVDAT 4 17-JAN-24 5M07 1 LINK REVDAT 3 01-MAR-17 5M07 1 JRNL REVDAT 2 18-JAN-17 5M07 1 JRNL REVDAT 1 11-JAN-17 5M07 0 JRNL AUTH M.N.LISA,T.WAGNER,M.ALEXANDRE,N.BARILONE,B.RAYNAL, JRNL AUTH 2 P.M.ALZARI,M.BELLINZONI JRNL TITL THE CRYSTAL STRUCTURE OF PKNI FROM MYCOBACTERIUM JRNL TITL 2 TUBERCULOSIS SHOWS AN INACTIVE, PSEUDOKINASE-LIKE JRNL TITL 3 CONFORMATION. JRNL REF FEBS J. V. 284 602 2017 JRNL REFN ISSN 1742-4658 JRNL PMID 28054744 JRNL DOI 10.1111/FEBS.14003 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.2 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.14 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 38927 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.210 REMARK 3 R VALUE (WORKING SET) : 0.209 REMARK 3 FREE R VALUE : 0.235 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.030 REMARK 3 FREE R VALUE TEST SET COUNT : 1958 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.56 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2804 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2760 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2673 REMARK 3 BIN R VALUE (WORKING SET) : 0.2724 REMARK 3 BIN FREE R VALUE : 0.3529 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.67 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 131 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3714 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 154 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 89.02 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 85.32 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -6.29270 REMARK 3 B22 (A**2) : -6.29270 REMARK 3 B33 (A**2) : 12.58530 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.366 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.215 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.185 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.211 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.185 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.947 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.933 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 3800 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 5177 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1690 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 82 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 580 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 3800 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : 0 ; 5.000 ; SEMIHARMONIC REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 485 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 4221 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.01 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.74 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 2.64 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|1 - A|94 } REMARK 3 ORIGIN FOR THE GROUP (A): -50.1189 11.4960 -14.7262 REMARK 3 T TENSOR REMARK 3 T11: -0.1305 T22: -0.1399 REMARK 3 T33: -0.2042 T12: -0.1100 REMARK 3 T13: 0.0248 T23: -0.0511 REMARK 3 L TENSOR REMARK 3 L11: 4.2533 L22: 4.8413 REMARK 3 L33: 3.0742 L12: 2.0216 REMARK 3 L13: -0.6120 L23: -1.3207 REMARK 3 S TENSOR REMARK 3 S11: -0.2257 S12: 0.2355 S13: 0.5682 REMARK 3 S21: -0.0252 S22: 0.1830 S23: 0.6324 REMARK 3 S31: -0.5422 S32: -0.2188 S33: 0.0428 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { A|95 - A|256 } REMARK 3 ORIGIN FOR THE GROUP (A): -50.5332 -12.7792 -17.1542 REMARK 3 T TENSOR REMARK 3 T11: -0.2332 T22: -0.2111 REMARK 3 T33: -0.2081 T12: -0.1083 REMARK 3 T13: 0.1620 T23: -0.0601 REMARK 3 L TENSOR REMARK 3 L11: 3.3187 L22: 2.8245 REMARK 3 L33: 3.8363 L12: -1.5528 REMARK 3 L13: -1.8865 L23: 0.9499 REMARK 3 S TENSOR REMARK 3 S11: -0.2103 S12: -0.0067 S13: -0.4866 REMARK 3 S21: 0.1346 S22: -0.0905 S23: 0.4367 REMARK 3 S31: 0.5080 S32: -0.0914 S33: 0.3008 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: { B|1 - B|94 } REMARK 3 ORIGIN FOR THE GROUP (A): -18.8997 25.0270 -13.2488 REMARK 3 T TENSOR REMARK 3 T11: -0.0934 T22: -0.1780 REMARK 3 T33: -0.1709 T12: -0.0471 REMARK 3 T13: 0.0751 T23: -0.0214 REMARK 3 L TENSOR REMARK 3 L11: 1.8691 L22: 5.2735 REMARK 3 L33: 5.2312 L12: 3.4991 REMARK 3 L13: -0.3498 L23: -3.0007 REMARK 3 S TENSOR REMARK 3 S11: -0.2656 S12: 0.1600 S13: -0.6573 REMARK 3 S21: -0.3957 S22: -0.1498 S23: -0.7965 REMARK 3 S31: 0.4952 S32: 0.5525 S33: 0.4154 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: { B|95 - B|256 } REMARK 3 ORIGIN FOR THE GROUP (A): -26.2640 24.8462 9.5932 REMARK 3 T TENSOR REMARK 3 T11: -0.0738 T22: -0.2146 REMARK 3 T33: -0.3068 T12: -0.1234 REMARK 3 T13: 0.0138 T23: 0.0030 REMARK 3 L TENSOR REMARK 3 L11: 2.7229 L22: 2.8652 REMARK 3 L33: 4.5456 L12: 0.7635 REMARK 3 L13: 1.3169 L23: 1.6543 REMARK 3 S TENSOR REMARK 3 S11: 0.0636 S12: -0.4729 S13: 0.0081 REMARK 3 S21: 0.4290 S22: -0.1249 S23: 0.0598 REMARK 3 S31: 0.7181 S32: -0.2853 S33: 0.0613 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5M07 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 04-OCT-16. REMARK 100 THE DEPOSITION ID IS D_1200001658. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-MAY-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9801 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 38990 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 48.440 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 12.70 REMARK 200 R MERGE (I) : 0.05100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 29.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.60 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 13.00 REMARK 200 R MERGE FOR SHELL (I) : 1.83600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 5M06 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 73.19 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.59 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 3.5 M NACL, 0.08 M HEPES-NA PH 8.5, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+3/4 REMARK 290 4555 Y,-X,Z+1/4 REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z+1/2 REMARK 290 7555 Y,X,-Z+1/4 REMARK 290 8555 -Y,-X,-Z+3/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 92.73550 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 139.10325 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 46.36775 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 92.73550 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 46.36775 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 139.10325 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -19 REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 465 LEU A -6 REMARK 465 VAL A -5 REMARK 465 PRO A -4 REMARK 465 ARG A -3 REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 SER A 149 REMARK 465 ALA A 150 REMARK 465 GLY A 151 REMARK 465 SER A 205 REMARK 465 HIS A 206 REMARK 465 THR A 207 REMARK 465 GLY A 208 REMARK 465 PRO A 209 REMARK 465 MET B -19 REMARK 465 GLY B -18 REMARK 465 SER B -17 REMARK 465 SER B -16 REMARK 465 HIS B -15 REMARK 465 HIS B -14 REMARK 465 HIS B -13 REMARK 465 HIS B -12 REMARK 465 HIS B -11 REMARK 465 HIS B -10 REMARK 465 SER B -9 REMARK 465 SER B -8 REMARK 465 GLY B -7 REMARK 465 LEU B -6 REMARK 465 VAL B -5 REMARK 465 PRO B -4 REMARK 465 ARG B -3 REMARK 465 GLY B -2 REMARK 465 SER B -1 REMARK 465 HIS B 0 REMARK 465 GLN B 148 REMARK 465 SER B 149 REMARK 465 ALA B 150 REMARK 465 GLY B 151 REMARK 465 ASP B 152 REMARK 465 HIS B 206 REMARK 465 THR B 207 REMARK 465 GLY B 208 REMARK 465 PRO B 209 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A 23 CG SD CE REMARK 470 GLU A 52 CG CD OE1 OE2 REMARK 470 ARG A 55 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 58 CG CD OE1 NE2 REMARK 470 ASP A 152 CG OD1 OD2 REMARK 470 LEU A 210 CG CD1 CD2 REMARK 470 MET B 1 CG SD CE REMARK 470 MET B 23 CG SD CE REMARK 470 GLU B 52 CG CD OE1 OE2 REMARK 470 GLN B 165 CG CD OE1 NE2 REMARK 470 SER B 174 OG REMARK 470 LEU B 210 CG CD1 CD2 REMARK 470 GLN B 211 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 136 -6.42 79.98 REMARK 500 ASP A 137 56.67 -151.50 REMARK 500 ALA A 177 -155.73 -86.47 REMARK 500 PHE B 105 131.18 -38.53 REMARK 500 ARG B 136 -0.28 75.91 REMARK 500 ASP B 137 54.68 -154.45 REMARK 500 ALA B 177 -153.08 -87.30 REMARK 500 ARG B 204 89.89 -66.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 301 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA A 65 O REMARK 620 2 VAL A 75 O 78.5 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 301 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA B 65 O REMARK 620 2 VAL B 75 O 86.8 REMARK 620 3 HOH B 405 O 84.1 83.1 REMARK 620 4 HOH B 417 O 107.8 159.6 84.4 REMARK 620 5 HOH B 420 O 137.3 86.3 136.6 91.9 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA B 301 DBREF 5M07 A 1 256 UNP P9WI69 PKNI_MYCTU 1 256 DBREF 5M07 B 1 256 UNP P9WI69 PKNI_MYCTU 1 256 SEQADV 5M07 MET A -19 UNP P9WI69 INITIATING METHIONINE SEQADV 5M07 GLY A -18 UNP P9WI69 EXPRESSION TAG SEQADV 5M07 SER A -17 UNP P9WI69 EXPRESSION TAG SEQADV 5M07 SER A -16 UNP P9WI69 EXPRESSION TAG SEQADV 5M07 HIS A -15 UNP P9WI69 EXPRESSION TAG SEQADV 5M07 HIS A -14 UNP P9WI69 EXPRESSION TAG SEQADV 5M07 HIS A -13 UNP P9WI69 EXPRESSION TAG SEQADV 5M07 HIS A -12 UNP P9WI69 EXPRESSION TAG SEQADV 5M07 HIS A -11 UNP P9WI69 EXPRESSION TAG SEQADV 5M07 HIS A -10 UNP P9WI69 EXPRESSION TAG SEQADV 5M07 SER A -9 UNP P9WI69 EXPRESSION TAG SEQADV 5M07 SER A -8 UNP P9WI69 EXPRESSION TAG SEQADV 5M07 GLY A -7 UNP P9WI69 EXPRESSION TAG SEQADV 5M07 LEU A -6 UNP P9WI69 EXPRESSION TAG SEQADV 5M07 VAL A -5 UNP P9WI69 EXPRESSION TAG SEQADV 5M07 PRO A -4 UNP P9WI69 EXPRESSION TAG SEQADV 5M07 ARG A -3 UNP P9WI69 EXPRESSION TAG SEQADV 5M07 GLY A -2 UNP P9WI69 EXPRESSION TAG SEQADV 5M07 SER A -1 UNP P9WI69 EXPRESSION TAG SEQADV 5M07 HIS A 0 UNP P9WI69 EXPRESSION TAG SEQADV 5M07 ALA A 20 UNP P9WI69 CYS 20 ENGINEERED MUTATION SEQADV 5M07 MET B -19 UNP P9WI69 INITIATING METHIONINE SEQADV 5M07 GLY B -18 UNP P9WI69 EXPRESSION TAG SEQADV 5M07 SER B -17 UNP P9WI69 EXPRESSION TAG SEQADV 5M07 SER B -16 UNP P9WI69 EXPRESSION TAG SEQADV 5M07 HIS B -15 UNP P9WI69 EXPRESSION TAG SEQADV 5M07 HIS B -14 UNP P9WI69 EXPRESSION TAG SEQADV 5M07 HIS B -13 UNP P9WI69 EXPRESSION TAG SEQADV 5M07 HIS B -12 UNP P9WI69 EXPRESSION TAG SEQADV 5M07 HIS B -11 UNP P9WI69 EXPRESSION TAG SEQADV 5M07 HIS B -10 UNP P9WI69 EXPRESSION TAG SEQADV 5M07 SER B -9 UNP P9WI69 EXPRESSION TAG SEQADV 5M07 SER B -8 UNP P9WI69 EXPRESSION TAG SEQADV 5M07 GLY B -7 UNP P9WI69 EXPRESSION TAG SEQADV 5M07 LEU B -6 UNP P9WI69 EXPRESSION TAG SEQADV 5M07 VAL B -5 UNP P9WI69 EXPRESSION TAG SEQADV 5M07 PRO B -4 UNP P9WI69 EXPRESSION TAG SEQADV 5M07 ARG B -3 UNP P9WI69 EXPRESSION TAG SEQADV 5M07 GLY B -2 UNP P9WI69 EXPRESSION TAG SEQADV 5M07 SER B -1 UNP P9WI69 EXPRESSION TAG SEQADV 5M07 HIS B 0 UNP P9WI69 EXPRESSION TAG SEQADV 5M07 ALA B 20 UNP P9WI69 CYS 20 ENGINEERED MUTATION SEQRES 1 A 276 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 276 LEU VAL PRO ARG GLY SER HIS MET ALA LEU ALA SER GLY SEQRES 3 A 276 VAL THR PHE ALA GLY TYR THR VAL VAL ARG MET LEU GLY SEQRES 4 A 276 ALA SER ALA MET GLY GLU VAL TYR LEU VAL GLN HIS PRO SEQRES 5 A 276 GLY PHE PRO GLY TRP GLN ALA LEU LYS VAL LEU SER PRO SEQRES 6 A 276 ALA MET ALA ALA ASP ASP GLU PHE ARG ARG ARG PHE GLN SEQRES 7 A 276 ARG GLU THR GLU VAL ALA ALA ARG LEU PHE HIS PRO HIS SEQRES 8 A 276 ILE LEU GLU VAL HIS ASP ARG GLY GLU PHE ASP GLY GLN SEQRES 9 A 276 LEU TRP ILE ALA MET ASP TYR VAL ASP GLY ILE ASP ALA SEQRES 10 A 276 THR GLN HIS MET ALA ASP ARG PHE PRO ALA VAL LEU PRO SEQRES 11 A 276 VAL GLY GLU VAL LEU ALA ILE VAL THR ALA VAL ALA GLY SEQRES 12 A 276 ALA LEU ASP TYR ALA HIS GLN ARG GLY LEU LEU HIS ARG SEQRES 13 A 276 ASP VAL ASN PRO ALA ASN VAL VAL LEU THR SER GLN SER SEQRES 14 A 276 ALA GLY ASP GLN ARG ILE LEU LEU ALA ASP PHE GLY ILE SEQRES 15 A 276 ALA SER GLN PRO SER TYR PRO ALA PRO GLU LEU SER ALA SEQRES 16 A 276 GLY ALA ASP VAL ASP GLY ARG ALA ASP GLN TYR ALA LEU SEQRES 17 A 276 ALA LEU THR ALA ILE HIS LEU PHE ALA GLY ALA PRO PRO SEQRES 18 A 276 VAL ASP ARG SER HIS THR GLY PRO LEU GLN PRO PRO LYS SEQRES 19 A 276 LEU SER ALA PHE ARG PRO ASP LEU ALA ARG LEU ASP GLY SEQRES 20 A 276 VAL LEU SER ARG ALA LEU ALA THR ALA PRO ALA ASP ARG SEQRES 21 A 276 PHE GLY SER CYS ARG GLU PHE ALA ASP ALA MET ASN GLU SEQRES 22 A 276 GLN ALA GLY SEQRES 1 B 276 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 276 LEU VAL PRO ARG GLY SER HIS MET ALA LEU ALA SER GLY SEQRES 3 B 276 VAL THR PHE ALA GLY TYR THR VAL VAL ARG MET LEU GLY SEQRES 4 B 276 ALA SER ALA MET GLY GLU VAL TYR LEU VAL GLN HIS PRO SEQRES 5 B 276 GLY PHE PRO GLY TRP GLN ALA LEU LYS VAL LEU SER PRO SEQRES 6 B 276 ALA MET ALA ALA ASP ASP GLU PHE ARG ARG ARG PHE GLN SEQRES 7 B 276 ARG GLU THR GLU VAL ALA ALA ARG LEU PHE HIS PRO HIS SEQRES 8 B 276 ILE LEU GLU VAL HIS ASP ARG GLY GLU PHE ASP GLY GLN SEQRES 9 B 276 LEU TRP ILE ALA MET ASP TYR VAL ASP GLY ILE ASP ALA SEQRES 10 B 276 THR GLN HIS MET ALA ASP ARG PHE PRO ALA VAL LEU PRO SEQRES 11 B 276 VAL GLY GLU VAL LEU ALA ILE VAL THR ALA VAL ALA GLY SEQRES 12 B 276 ALA LEU ASP TYR ALA HIS GLN ARG GLY LEU LEU HIS ARG SEQRES 13 B 276 ASP VAL ASN PRO ALA ASN VAL VAL LEU THR SER GLN SER SEQRES 14 B 276 ALA GLY ASP GLN ARG ILE LEU LEU ALA ASP PHE GLY ILE SEQRES 15 B 276 ALA SER GLN PRO SER TYR PRO ALA PRO GLU LEU SER ALA SEQRES 16 B 276 GLY ALA ASP VAL ASP GLY ARG ALA ASP GLN TYR ALA LEU SEQRES 17 B 276 ALA LEU THR ALA ILE HIS LEU PHE ALA GLY ALA PRO PRO SEQRES 18 B 276 VAL ASP ARG SER HIS THR GLY PRO LEU GLN PRO PRO LYS SEQRES 19 B 276 LEU SER ALA PHE ARG PRO ASP LEU ALA ARG LEU ASP GLY SEQRES 20 B 276 VAL LEU SER ARG ALA LEU ALA THR ALA PRO ALA ASP ARG SEQRES 21 B 276 PHE GLY SER CYS ARG GLU PHE ALA ASP ALA MET ASN GLU SEQRES 22 B 276 GLN ALA GLY HET NA A 301 1 HET NA B 301 1 HETNAM NA SODIUM ION FORMUL 3 NA 2(NA 1+) FORMUL 5 HOH *154(H2 O) HELIX 1 AA1 SER A 44 ALA A 49 1 6 HELIX 2 AA2 ASP A 50 LEU A 67 1 18 HELIX 3 AA3 ALA A 97 PHE A 105 1 9 HELIX 4 AA4 PRO A 110 GLN A 130 1 21 HELIX 5 AA5 ASN A 139 ALA A 141 5 3 HELIX 6 AA6 ALA A 170 GLY A 176 1 7 HELIX 7 AA7 GLY A 181 GLY A 198 1 18 HELIX 8 AA8 LYS A 214 PHE A 218 5 5 HELIX 9 AA9 ARG A 219 ARG A 224 5 6 HELIX 10 AB1 LEU A 225 LEU A 233 1 9 HELIX 11 AB2 ALA A 236 ARG A 240 5 5 HELIX 12 AB3 SER A 243 GLY A 256 1 14 HELIX 13 AB4 SER B 44 ASP B 50 1 7 HELIX 14 AB5 ASP B 50 LEU B 67 1 18 HELIX 15 AB6 ALA B 97 PHE B 105 1 9 HELIX 16 AB7 PRO B 110 GLN B 130 1 21 HELIX 17 AB8 ASN B 139 ALA B 141 5 3 HELIX 18 AB9 ALA B 170 GLY B 176 1 7 HELIX 19 AC1 GLY B 181 GLY B 198 1 18 HELIX 20 AC2 LYS B 214 PHE B 218 5 5 HELIX 21 AC3 ARG B 219 ARG B 224 5 6 HELIX 22 AC4 LEU B 225 LEU B 233 1 9 HELIX 23 AC5 ALA B 236 ARG B 240 5 5 HELIX 24 AC6 SER B 243 GLY B 256 1 14 SHEET 1 AA1 6 THR A 8 PHE A 9 0 SHEET 2 AA1 6 TYR A 12 SER A 21 -1 O TYR A 12 N PHE A 9 SHEET 3 AA1 6 GLY A 24 HIS A 31 -1 O VAL A 26 N GLY A 19 SHEET 4 AA1 6 PHE A 34 LEU A 43 -1 O VAL A 42 N GLU A 25 SHEET 5 AA1 6 GLN A 84 ASP A 90 -1 O MET A 89 N ALA A 39 SHEET 6 AA1 6 VAL A 75 PHE A 81 -1 N ASP A 77 O ALA A 88 SHEET 1 AA2 3 GLY A 94 ASP A 96 0 SHEET 2 AA2 3 VAL A 143 THR A 146 -1 O LEU A 145 N ILE A 95 SHEET 3 AA2 3 ILE A 155 LEU A 157 -1 O LEU A 156 N VAL A 144 SHEET 1 AA3 6 THR B 8 PHE B 9 0 SHEET 2 AA3 6 TYR B 12 SER B 21 -1 O TYR B 12 N PHE B 9 SHEET 3 AA3 6 GLY B 24 GLN B 30 -1 O LEU B 28 N ARG B 16 SHEET 4 AA3 6 GLN B 38 LEU B 43 -1 O VAL B 42 N GLU B 25 SHEET 5 AA3 6 GLN B 84 ASP B 90 -1 O MET B 89 N ALA B 39 SHEET 6 AA3 6 VAL B 75 PHE B 81 -1 N ASP B 77 O ALA B 88 SHEET 1 AA4 3 GLY B 94 ASP B 96 0 SHEET 2 AA4 3 VAL B 143 THR B 146 -1 O LEU B 145 N ILE B 95 SHEET 3 AA4 3 ILE B 155 LEU B 157 -1 O LEU B 156 N VAL B 144 LINK O ALA A 65 NA NA A 301 1555 1555 2.58 LINK O VAL A 75 NA NA A 301 1555 1555 2.58 LINK O ALA B 65 NA NA B 301 1555 1555 2.26 LINK O VAL B 75 NA NA B 301 1555 1555 2.31 LINK NA NA B 301 O HOH B 405 1555 1555 2.74 LINK NA NA B 301 O HOH B 417 1555 1555 2.48 LINK NA NA B 301 O HOH B 420 1555 1555 2.34 CISPEP 1 PHE A 105 PRO A 106 0 2.62 CISPEP 2 PHE B 105 PRO B 106 0 1.79 SITE 1 AC1 2 ALA A 65 VAL A 75 SITE 1 AC2 5 ALA B 65 VAL B 75 HOH B 405 HOH B 417 SITE 2 AC2 5 HOH B 420 CRYST1 108.304 108.304 185.471 90.00 90.00 90.00 P 43 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009233 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009233 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005392 0.00000