HEADER HYDROLASE 04-OCT-16 5M0D TITLE STRUCTURE-BASED EVOLUTION OF A HYBRID STEROID SERIES OF AUTOTAXIN TITLE 2 INHIBITORS COMPND MOL_ID: 1; COMPND 2 MOLECULE: ECTONUCLEOTIDE PYROPHOSPHATASE/PHOSPHODIESTERASE FAMILY COMPND 3 MEMBER 2,ECTONUCLEOTIDE PYROPHOSPHATASE/PHOSPHODIESTERASE FAMILY COMPND 4 MEMBER 2; COMPND 5 CHAIN: A; COMPND 6 SYNONYM: E-NPP 2,AUTOTAXIN,EXTRACELLULAR LYSOPHOSPHOLIPASE D,LYSOPLD, COMPND 7 E-NPP 2,AUTOTAXIN,EXTRACELLULAR LYSOPHOSPHOLIPASE D,LYSOPLD; COMPND 8 EC: 3.1.4.39,3.1.4.39; COMPND 9 ENGINEERED: YES; COMPND 10 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 3 ORGANISM_COMMON: RAT; SOURCE 4 ORGANISM_TAXID: 10116; SOURCE 5 GENE: ENPP2, ATX, NPPS2; SOURCE 6 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: HEK293; SOURCE 9 EXPRESSION_SYSTEM_ORGAN: KIDNEY KEYWDS MEDICINAL CHEMISTRY, STRUCTURE BASED DESIGN, AUTOTAXIN, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR W.-J.KEUNE,T.HEIDEBRECHT,A.PERRAKIS REVDAT 4 17-JAN-24 5M0D 1 HETSYN LINK REVDAT 3 29-JUL-20 5M0D 1 COMPND REMARK HETNAM LINK REVDAT 3 2 1 SITE ATOM REVDAT 2 16-OCT-19 5M0D 1 REMARK REVDAT 1 16-AUG-17 5M0D 0 JRNL AUTH W.J.KEUNE,F.POTJEWYD,T.HEIDEBRECHT,F.SALGADO-POLO, JRNL AUTH 2 S.J.MACDONALD,L.CHELVARAJAN,A.ABDEL LATIF,S.SOMAN, JRNL AUTH 3 A.J.MORRIS,A.J.WATSON,C.JAMIESON,A.PERRAKIS JRNL TITL RATIONAL DESIGN OF AUTOTAXIN INHIBITORS BY STRUCTURAL JRNL TITL 2 EVOLUTION OF ENDOGENOUS MODULATORS. JRNL REF J. MED. CHEM. V. 60 2006 2017 JRNL REFN ISSN 1520-4804 JRNL PMID 28165241 JRNL DOI 10.1021/ACS.JMEDCHEM.6B01743 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0155 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 75.34 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 30558 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.227 REMARK 3 R VALUE (WORKING SET) : 0.225 REMARK 3 FREE R VALUE : 0.270 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1568 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.46 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2202 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.53 REMARK 3 BIN R VALUE (WORKING SET) : 0.3190 REMARK 3 BIN FREE R VALUE SET COUNT : 108 REMARK 3 BIN FREE R VALUE : 0.3410 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6251 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 181 REMARK 3 SOLVENT ATOMS : 19 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 59.66 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.58000 REMARK 3 B22 (A**2) : -3.34000 REMARK 3 B33 (A**2) : 2.88000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 1.57000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.644 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.303 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.351 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 37.052 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.943 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.913 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6616 ; 0.008 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 6021 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8989 ; 1.377 ; 1.980 REMARK 3 BOND ANGLES OTHERS (DEGREES): 13951 ; 0.934 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 772 ; 7.009 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 311 ;33.536 ;23.248 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1065 ;14.131 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 47 ;16.647 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 968 ; 0.075 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 7268 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1539 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3101 ; 0.323 ; 1.023 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 3096 ; 0.320 ; 1.014 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3866 ; 0.608 ; 1.520 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 3867 ; 0.608 ; 1.520 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3515 ; 0.217 ; 1.111 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 3515 ; 0.215 ; 1.111 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 5124 ; 0.388 ; 1.646 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 7208 ; 3.597 ;13.225 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 7208 ; 3.597 ;13.223 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): 1 ;38.132 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 10 ;82.075 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 56 A 1001 REMARK 3 ORIGIN FOR THE GROUP (A): -13.5361 -13.2279 -15.8344 REMARK 3 T TENSOR REMARK 3 T11: 0.2355 T22: 1.0207 REMARK 3 T33: 0.0100 T12: 0.0254 REMARK 3 T13: -0.0335 T23: 0.0048 REMARK 3 L TENSOR REMARK 3 L11: 1.0151 L22: 1.0685 REMARK 3 L33: 2.1828 L12: 0.3550 REMARK 3 L13: 0.2268 L23: 0.3514 REMARK 3 S TENSOR REMARK 3 S11: -0.0020 S12: -0.0380 S13: 0.0485 REMARK 3 S21: -0.0716 S22: 0.0296 S23: 0.0598 REMARK 3 S31: -0.0809 S32: 0.0659 S33: -0.0276 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.00 REMARK 3 ION PROBE RADIUS : 0.70 REMARK 3 SHRINKAGE RADIUS : 0.70 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5M0D COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 05-OCT-16. REMARK 100 THE DEPOSITION ID IS D_1200001684. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-MAY-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06DA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9801 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS 1.0 REMARK 200 DATA SCALING SOFTWARE : AIMLESS 1.0 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 50000 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 75.340 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 200 DATA REDUNDANCY : 4.500 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 41.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 1.0 REMARK 200 STARTING MODEL: 2XR9 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.97 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG3350, NASCN AND NH4I, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 44.00600 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5810 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 32010 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -41.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 36 REMARK 465 GLU A 37 REMARK 465 TRP A 38 REMARK 465 ASP A 39 REMARK 465 GLU A 40 REMARK 465 GLY A 41 REMARK 465 PRO A 42 REMARK 465 PRO A 43 REMARK 465 THR A 44 REMARK 465 VAL A 45 REMARK 465 LEU A 46 REMARK 465 SER A 47 REMARK 465 ASP A 48 REMARK 465 SER A 49 REMARK 465 PRO A 50 REMARK 465 TRP A 51 REMARK 465 THR A 52 REMARK 465 ASN A 53 REMARK 465 THR A 54 REMARK 465 SER A 55 REMARK 465 VAL A 460 REMARK 465 TYR A 461 REMARK 465 LYS A 462 REMARK 465 LYS A 463 REMARK 465 PRO A 464 REMARK 465 SER A 465 REMARK 465 GLY A 466 REMARK 465 LYS A 467 REMARK 465 CYS A 468 REMARK 465 PHE A 469 REMARK 465 ASP A 570 REMARK 465 LYS A 571 REMARK 465 VAL A 572 REMARK 465 GLU A 573 REMARK 465 PRO A 574 REMARK 465 LYS A 575 REMARK 465 ASN A 576 REMARK 465 LYS A 577 REMARK 465 LEU A 578 REMARK 465 GLU A 579 REMARK 465 GLU A 580 REMARK 465 PHE A 581 REMARK 465 ASN A 582 REMARK 465 LYS A 583 REMARK 465 ARG A 584 REMARK 465 LEU A 585 REMARK 465 HIS A 586 REMARK 465 THR A 587 REMARK 465 LYS A 588 REMARK 465 SER A 860 REMARK 465 GLU A 861 REMARK 465 ILE A 862 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 65 54.79 -100.54 REMARK 500 VAL A 68 -89.84 -91.56 REMARK 500 SER A 84 30.76 -142.98 REMARK 500 ILE A 227 73.98 -106.26 REMARK 500 ARG A 283 -49.75 148.08 REMARK 500 ARG A 368 69.44 -111.47 REMARK 500 ASN A 378 64.21 -101.11 REMARK 500 SER A 400 -55.24 80.08 REMARK 500 HIS A 433 50.09 35.42 REMARK 500 ALA A 435 -34.15 -159.49 REMARK 500 LEU A 458 43.44 -95.00 REMARK 500 ASP A 477 126.17 -29.37 REMARK 500 HIS A 532 -10.00 -58.15 REMARK 500 CYS A 568 -70.35 -146.39 REMARK 500 SER A 676 -151.65 -117.15 REMARK 500 LYS A 692 -37.44 -39.55 REMARK 500 THR A 823 150.45 -47.14 REMARK 500 TYR A 858 51.69 72.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 919 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 171 OD1 REMARK 620 2 THR A 209 OG1 130.1 REMARK 620 3 ASP A 358 OD2 83.4 121.7 REMARK 620 4 HIS A 359 NE2 106.0 107.1 104.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 918 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 311 OD2 REMARK 620 2 HIS A 315 NE2 94.6 REMARK 620 3 HIS A 474 NE2 116.9 97.4 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 922 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TYR A 669 O REMARK 620 2 ASP A 672 O 65.6 REMARK 620 3 MET A 675 O 83.1 79.9 REMARK 620 4 HOH A1018 O 152.5 140.6 106.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 920 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 739 OD1 REMARK 620 2 ASN A 741 OD1 76.9 REMARK 620 3 ASP A 743 OD1 74.4 80.2 REMARK 620 4 LEU A 745 O 88.1 158.7 81.3 REMARK 620 5 ASP A 747 OD1 103.7 85.8 165.9 112.8 REMARK 620 N 1 2 3 4 DBREF 5M0D A 36 591 UNP Q64610 ENPP2_RAT 36 591 DBREF 5M0D A 592 862 UNP Q64610 ENPP2_RAT 592 862 SEQADV 5M0D ALA A 410 UNP Q64610 ASN 410 ENGINEERED MUTATION SEQADV 5M0D PHE A 581 UNP Q64610 LEU 581 ENGINEERED MUTATION SEQADV 5M0D ALA A 806 UNP Q64610 ASN 806 ENGINEERED MUTATION SEQRES 1 A 827 ALA GLU TRP ASP GLU GLY PRO PRO THR VAL LEU SER ASP SEQRES 2 A 827 SER PRO TRP THR ASN THR SER GLY SER CYS LYS GLY ARG SEQRES 3 A 827 CYS PHE GLU LEU GLN GLU VAL GLY PRO PRO ASP CYS ARG SEQRES 4 A 827 CYS ASP ASN LEU CYS LYS SER TYR SER SER CYS CYS HIS SEQRES 5 A 827 ASP PHE ASP GLU LEU CYS LEU LYS THR ALA ARG GLY TRP SEQRES 6 A 827 GLU CYS THR LYS ASP ARG CYS GLY GLU VAL ARG ASN GLU SEQRES 7 A 827 GLU ASN ALA CYS HIS CYS SER GLU ASP CYS LEU SER ARG SEQRES 8 A 827 GLY ASP CYS CYS THR ASN TYR GLN VAL VAL CYS LYS GLY SEQRES 9 A 827 GLU SER HIS TRP VAL ASP ASP ASP CYS GLU GLU ILE LYS SEQRES 10 A 827 VAL PRO GLU CYS PRO ALA GLY PHE VAL ARG PRO PRO LEU SEQRES 11 A 827 ILE ILE PHE SER VAL ASP GLY PHE ARG ALA SER TYR MET SEQRES 12 A 827 LYS LYS GLY SER LYS VAL MET PRO ASN ILE GLU LYS LEU SEQRES 13 A 827 ARG SER CYS GLY THR HIS ALA PRO TYR MET ARG PRO VAL SEQRES 14 A 827 TYR PRO THR LYS THR PHE PRO ASN LEU TYR THR LEU ALA SEQRES 15 A 827 THR GLY LEU TYR PRO GLU SER HIS GLY ILE VAL GLY ASN SEQRES 16 A 827 SER MET TYR ASP PRO VAL PHE ASP ALA SER PHE HIS LEU SEQRES 17 A 827 ARG GLY ARG GLU LYS PHE ASN HIS ARG TRP TRP GLY GLY SEQRES 18 A 827 GLN PRO LEU TRP ILE THR ALA THR LYS GLN GLY VAL ARG SEQRES 19 A 827 ALA GLY THR PHE PHE TRP SER VAL SER ILE PRO HIS GLU SEQRES 20 A 827 ARG ARG ILE LEU THR ILE LEU GLN TRP LEU SER LEU PRO SEQRES 21 A 827 ASP ASN GLU ARG PRO SER VAL TYR ALA PHE TYR SER GLU SEQRES 22 A 827 GLN PRO ASP PHE SER GLY HIS LYS TYR GLY PRO PHE GLY SEQRES 23 A 827 PRO GLU MET THR ASN PRO LEU ARG GLU ILE ASP LYS THR SEQRES 24 A 827 VAL GLY GLN LEU MET ASP GLY LEU LYS GLN LEU ARG LEU SEQRES 25 A 827 HIS ARG CYS VAL ASN VAL ILE PHE VAL GLY ASP HIS GLY SEQRES 26 A 827 MET GLU ASP VAL THR CYS ASP ARG THR GLU PHE LEU SER SEQRES 27 A 827 ASN TYR LEU THR ASN VAL ASP ASP ILE THR LEU VAL PRO SEQRES 28 A 827 GLY THR LEU GLY ARG ILE ARG ALA LYS SER ILE ASN ASN SEQRES 29 A 827 SER LYS TYR ASP PRO LYS THR ILE ILE ALA ALA LEU THR SEQRES 30 A 827 CYS LYS LYS PRO ASP GLN HIS PHE LYS PRO TYR MET LYS SEQRES 31 A 827 GLN HIS LEU PRO LYS ARG LEU HIS TYR ALA ASN ASN ARG SEQRES 32 A 827 ARG ILE GLU ASP ILE HIS LEU LEU VAL ASP ARG ARG TRP SEQRES 33 A 827 HIS VAL ALA ARG LYS PRO LEU ASP VAL TYR LYS LYS PRO SEQRES 34 A 827 SER GLY LYS CYS PHE PHE GLN GLY ASP HIS GLY PHE ASP SEQRES 35 A 827 ASN LYS VAL ASN SER MET GLN THR VAL PHE VAL GLY TYR SEQRES 36 A 827 GLY PRO THR PHE LYS TYR ARG THR LYS VAL PRO PRO PHE SEQRES 37 A 827 GLU ASN ILE GLU LEU TYR ASN VAL MET CYS ASP LEU LEU SEQRES 38 A 827 GLY LEU LYS PRO ALA PRO ASN ASN GLY THR HIS GLY SER SEQRES 39 A 827 LEU ASN HIS LEU LEU ARG THR ASN THR PHE ARG PRO THR SEQRES 40 A 827 MET PRO ASP GLU VAL SER ARG PRO ASN TYR PRO GLY ILE SEQRES 41 A 827 MET TYR LEU GLN SER GLU PHE ASP LEU GLY CYS THR CYS SEQRES 42 A 827 ASP ASP LYS VAL GLU PRO LYS ASN LYS LEU GLU GLU PHE SEQRES 43 A 827 ASN LYS ARG LEU HIS THR LYS GLY SER THR LYS GLU ARG SEQRES 44 A 827 HIS LEU LEU TYR GLY ARG PRO ALA VAL LEU TYR ARG THR SEQRES 45 A 827 SER TYR ASP ILE LEU TYR HIS THR ASP PHE GLU SER GLY SEQRES 46 A 827 TYR SER GLU ILE PHE LEU MET PRO LEU TRP THR SER TYR SEQRES 47 A 827 THR ILE SER LYS GLN ALA GLU VAL SER SER ILE PRO GLU SEQRES 48 A 827 HIS LEU THR ASN CYS VAL ARG PRO ASP VAL ARG VAL SER SEQRES 49 A 827 PRO GLY PHE SER GLN ASN CYS LEU ALA TYR LYS ASN ASP SEQRES 50 A 827 LYS GLN MET SER TYR GLY PHE LEU PHE PRO PRO TYR LEU SEQRES 51 A 827 SER SER SER PRO GLU ALA LYS TYR ASP ALA PHE LEU VAL SEQRES 52 A 827 THR ASN MET VAL PRO MET TYR PRO ALA PHE LYS ARG VAL SEQRES 53 A 827 TRP ALA TYR PHE GLN ARG VAL LEU VAL LYS LYS TYR ALA SEQRES 54 A 827 SER GLU ARG ASN GLY VAL ASN VAL ILE SER GLY PRO ILE SEQRES 55 A 827 PHE ASP TYR ASN TYR ASP GLY LEU ARG ASP THR GLU ASP SEQRES 56 A 827 GLU ILE LYS GLN TYR VAL GLU GLY SER SER ILE PRO VAL SEQRES 57 A 827 PRO THR HIS TYR TYR SER ILE ILE THR SER CYS LEU ASP SEQRES 58 A 827 PHE THR GLN PRO ALA ASP LYS CYS ASP GLY PRO LEU SER SEQRES 59 A 827 VAL SER SER PHE ILE LEU PRO HIS ARG PRO ASP ASN ASP SEQRES 60 A 827 GLU SER CYS ALA SER SER GLU ASP GLU SER LYS TRP VAL SEQRES 61 A 827 GLU GLU LEU MET LYS MET HIS THR ALA ARG VAL ARG ASP SEQRES 62 A 827 ILE GLU HIS LEU THR GLY LEU ASP PHE TYR ARG LYS THR SEQRES 63 A 827 SER ARG SER TYR SER GLU ILE LEU THR LEU LYS THR TYR SEQRES 64 A 827 LEU HIS THR TYR GLU SER GLU ILE HET NAG B 1 14 HET NAG B 2 14 HET BMA B 3 11 HET MAN B 4 11 HET MAN B 5 11 HET MAN B 6 11 HET MAN B 7 11 HET MAN B 8 11 HET IOD A 909 1 HET IOD A 910 1 HET IOD A 911 1 HET IOD A 912 1 HET IOD A 913 1 HET IOD A 914 1 HET IOD A 915 1 HET IOD A 916 1 HET IOD A 917 1 HET ZN A 918 1 HET ZN A 919 1 HET CA A 920 1 HET 7C8 A 921 44 HET NA A 922 1 HET SCN A 923 3 HET SCN A 924 3 HET SCN A 925 3 HET SCN A 926 3 HET GOL A 927 6 HET GOL A 928 6 HET GOL A 929 6 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM MAN ALPHA-D-MANNOPYRANOSE HETNAM IOD IODIDE ION HETNAM ZN ZINC ION HETNAM CA CALCIUM ION HETNAM 7C8 [3,5-BIS(CHLORANYL)PHENYL]METHYL 4-[(4~{R})-4-[(3~{R}, HETNAM 2 7C8 5~{S},7~{S},8~{R},9~{S},10~{S},13~{R},14~{S},17~{R})- HETNAM 3 7C8 10,13-DIMETHYL-3,7-BIS(OXIDANYL)-2,3,4,5,6,7,8,9,11, HETNAM 4 7C8 12,14,15,16,17-TETRADECAHYDRO-1~{H}- HETNAM 5 7C8 CYCLOPENTA[A]PHENANTHREN-17-YL]PENTYL]PIPERAZINE-1- HETNAM 6 7C8 CARBOXYLATE HETNAM NA SODIUM ION HETNAM SCN THIOCYANATE ION HETNAM GOL GLYCEROL HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN BMA BETA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN MAN ALPHA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 NAG 2(C8 H15 N O6) FORMUL 2 BMA C6 H12 O6 FORMUL 2 MAN 5(C6 H12 O6) FORMUL 3 IOD 9(I 1-) FORMUL 12 ZN 2(ZN 2+) FORMUL 14 CA CA 2+ FORMUL 15 7C8 C36 H54 CL2 N2 O4 FORMUL 16 NA NA 1+ FORMUL 17 SCN 4(C N S 1-) FORMUL 21 GOL 3(C3 H8 O3) FORMUL 24 HOH *19(H2 O) HELIX 1 AA1 ASP A 88 LEU A 94 1 7 HELIX 2 AA2 THR A 103 CYS A 107 5 5 HELIX 3 AA3 SER A 120 GLY A 127 5 8 HELIX 4 AA4 ASN A 132 CYS A 137 1 6 HELIX 5 AA5 HIS A 142 ASP A 146 5 5 HELIX 6 AA6 ARG A 174 VAL A 184 5 11 HELIX 7 AA7 MET A 185 GLY A 195 1 11 HELIX 8 AA8 LYS A 208 GLY A 219 1 12 HELIX 9 AA9 TYR A 221 GLY A 226 1 6 HELIX 10 AB1 ARG A 246 TRP A 254 5 9 HELIX 11 AB2 PRO A 258 GLN A 266 1 9 HELIX 12 AB3 PRO A 280 SER A 293 1 14 HELIX 13 AB4 ASP A 311 GLY A 318 1 8 HELIX 14 AB5 GLY A 321 GLU A 323 5 3 HELIX 15 AB6 MET A 324 LEU A 345 1 22 HELIX 16 AB7 SER A 373 TYR A 375 5 3 HELIX 17 AB8 ASN A 378 ASP A 380 5 3 HELIX 18 AB9 ASP A 403 THR A 412 1 10 HELIX 19 AC1 GLN A 426 LEU A 428 5 3 HELIX 20 AC2 PRO A 429 HIS A 433 5 5 HELIX 21 AC3 VAL A 480 GLN A 484 5 5 HELIX 22 AC4 GLU A 507 LEU A 516 1 10 HELIX 23 AC5 LEU A 530 LEU A 534 5 5 HELIX 24 AC6 LEU A 558 PHE A 562 5 5 HELIX 25 AC7 THR A 591 LEU A 596 1 6 HELIX 26 AC8 PRO A 645 THR A 649 5 5 HELIX 27 AC9 SER A 659 SER A 663 5 5 HELIX 28 AD1 ASN A 665 ASP A 672 1 8 HELIX 29 AD2 PRO A 682 SER A 686 5 5 HELIX 30 AD3 SER A 688 PHE A 696 1 9 HELIX 31 AD4 LEU A 697 THR A 699 5 3 HELIX 32 AD5 TYR A 705 VAL A 718 1 14 HELIX 33 AD6 VAL A 718 ARG A 727 1 10 HELIX 34 AD7 PRO A 780 CYS A 784 5 5 HELIX 35 AD8 ASP A 810 LYS A 813 5 4 HELIX 36 AD9 TRP A 814 HIS A 822 1 9 HELIX 37 AE1 ARG A 825 GLY A 834 1 10 HELIX 38 AE2 SER A 844 TYR A 854 1 11 SHEET 1 AA1 6 VAL A 302 PRO A 310 0 SHEET 2 AA1 6 LEU A 165 ASP A 171 1 N SER A 169 O PHE A 305 SHEET 3 AA1 6 ASN A 352 GLY A 357 1 O ILE A 354 N PHE A 168 SHEET 4 AA1 6 PHE A 487 TYR A 490 -1 O TYR A 490 N VAL A 353 SHEET 5 AA1 6 THR A 196 HIS A 197 -1 N THR A 196 O GLY A 489 SHEET 6 AA1 6 THR A 498 LYS A 499 1 O THR A 498 N HIS A 197 SHEET 1 AA2 2 MET A 201 ARG A 202 0 SHEET 2 AA2 2 PHE A 503 GLU A 504 1 O PHE A 503 N ARG A 202 SHEET 1 AA3 2 MET A 232 ASP A 234 0 SHEET 2 AA3 2 ALA A 239 PHE A 241 -1 O PHE A 241 N MET A 232 SHEET 1 AA4 2 GLU A 362 ASP A 363 0 SHEET 2 AA4 2 GLY A 472 ASP A 473 -1 O ASP A 473 N GLU A 362 SHEET 1 AA5 2 THR A 369 PHE A 371 0 SHEET 2 AA5 2 HIS A 452 ALA A 454 1 O ALA A 454 N GLU A 370 SHEET 1 AA6 4 ILE A 382 VAL A 385 0 SHEET 2 AA6 4 LEU A 389 ALA A 394 -1 O ARG A 393 N THR A 383 SHEET 3 AA6 4 ILE A 443 VAL A 447 -1 O LEU A 445 N GLY A 390 SHEET 4 AA6 4 PHE A 420 MET A 424 -1 N TYR A 423 O HIS A 444 SHEET 1 AA7 2 ALA A 602 VAL A 603 0 SHEET 2 AA7 2 LEU A 835 ASP A 836 -1 O ASP A 836 N ALA A 602 SHEET 1 AA8 7 TYR A 609 TYR A 613 0 SHEET 2 AA8 7 GLU A 618 SER A 622 -1 O TYR A 621 N ASP A 610 SHEET 3 AA8 7 MET A 627 ILE A 635 -1 O SER A 632 N GLU A 618 SHEET 4 AA8 7 VAL A 730 ILE A 737 -1 O VAL A 732 N TYR A 633 SHEET 5 AA8 7 HIS A 766 CYS A 774 -1 O THR A 772 N ASN A 731 SHEET 6 AA8 7 LEU A 788 PRO A 796 -1 O SER A 789 N SER A 773 SHEET 7 AA8 7 THR A 823 ALA A 824 -1 O ALA A 824 N SER A 792 SHEET 1 AA9 2 SER A 676 PHE A 679 0 SHEET 2 AA9 2 MET A 701 MET A 704 -1 O VAL A 702 N GLY A 678 SSBOND 1 CYS A 58 CYS A 75 1555 1555 2.03 SSBOND 2 CYS A 62 CYS A 93 1555 1555 2.03 SSBOND 3 CYS A 73 CYS A 86 1555 1555 2.04 SSBOND 4 CYS A 79 CYS A 85 1555 1555 2.04 SSBOND 5 CYS A 102 CYS A 119 1555 1555 2.05 SSBOND 6 CYS A 107 CYS A 137 1555 1555 2.02 SSBOND 7 CYS A 117 CYS A 130 1555 1555 2.04 SSBOND 8 CYS A 123 CYS A 129 1555 1555 2.03 SSBOND 9 CYS A 148 CYS A 194 1555 1555 2.03 SSBOND 10 CYS A 156 CYS A 350 1555 1555 2.01 SSBOND 11 CYS A 413 CYS A 805 1555 1555 2.04 SSBOND 12 CYS A 566 CYS A 666 1555 1555 2.03 SSBOND 13 CYS A 568 CYS A 651 1555 1555 2.05 SSBOND 14 CYS A 774 CYS A 784 1555 1555 2.04 LINK ND2 ASN A 524 C1 NAG B 1 1555 1555 1.43 LINK O4 NAG B 1 C1 NAG B 2 1555 1555 1.42 LINK O4 NAG B 2 C1 BMA B 3 1555 1555 1.43 LINK O6 BMA B 3 C1 MAN B 4 1555 1555 1.45 LINK O3 BMA B 3 C1 MAN B 8 1555 1555 1.45 LINK O3 MAN B 4 C1 MAN B 5 1555 1555 1.44 LINK O6 MAN B 4 C1 MAN B 7 1555 1555 1.45 LINK O2 MAN B 5 C1 MAN B 6 1555 1555 1.45 LINK OD1 ASP A 171 ZN ZN A 919 1555 1555 1.93 LINK OG1 THR A 209 ZN ZN A 919 1555 1555 1.80 LINK OD2 ASP A 311 ZN ZN A 918 1555 1555 2.28 LINK NE2 HIS A 315 ZN ZN A 918 1555 1555 2.42 LINK OD2 ASP A 358 ZN ZN A 919 1555 1555 2.43 LINK NE2 HIS A 359 ZN ZN A 919 1555 1555 2.43 LINK NE2 HIS A 474 ZN ZN A 918 1555 1555 2.26 LINK O TYR A 669 NA NA A 922 1555 1555 2.94 LINK O ASP A 672 NA NA A 922 1555 1555 2.50 LINK O MET A 675 NA NA A 922 1555 1555 2.30 LINK OD1 ASP A 739 CA CA A 920 1555 1555 2.48 LINK OD1 ASN A 741 CA CA A 920 1555 1555 2.40 LINK OD1 ASP A 743 CA CA A 920 1555 1555 2.48 LINK O LEU A 745 CA CA A 920 1555 1555 2.34 LINK OD1 ASP A 747 CA CA A 920 1555 1555 2.40 LINK NA NA A 922 O HOH A1018 1555 1555 2.24 CISPEP 1 GLY A 69 PRO A 70 0 -13.83 CISPEP 2 TYR A 205 PRO A 206 0 -1.61 CISPEP 3 GLN A 309 PRO A 310 0 -3.90 CRYST1 62.927 88.012 77.356 90.00 103.10 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015891 0.000000 0.003697 0.00000 SCALE2 0.000000 0.011362 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013273 0.00000