HEADER OXIDOREDUCTASE 06-OCT-16 5M0Z TITLE CYCLOHEXANONE MONOOXYGENASE FROM T. MUNICIPALE: REDUCED ENZYME BOUND TITLE 2 TO NADP+ COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYCLOHEXANONE MONOOXYGENASE FROM THERMOCRISPUM MUNICIPALE.; COMPND 3 CHAIN: A; COMPND 4 EC: 1.14.13.22; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOCRISPUM MUNICIPALE DSM 44069; SOURCE 3 ORGANISM_TAXID: 1111737; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 316385; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: STR. K-12 SUBSTR. DH10B KEYWDS BAEYER-VILLIGER MONOOXYGENASES FLAVOENZYMES, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR J.R.GOMEZ-CASTELLANOS,A.MATTEVI REVDAT 4 17-JAN-24 5M0Z 1 REMARK REVDAT 3 22-APR-20 5M0Z 1 ATOM REVDAT 2 21-DEC-16 5M0Z 1 JRNL REVDAT 1 07-DEC-16 5M0Z 0 JRNL AUTH E.ROMERO,J.R.CASTELLANOS,A.MATTEVI,M.W.FRAAIJE JRNL TITL CHARACTERIZATION AND CRYSTAL STRUCTURE OF A ROBUST JRNL TITL 2 CYCLOHEXANONE MONOOXYGENASE. JRNL REF ANGEW. CHEM. INT. ED. ENGL. V. 55 15852 2016 JRNL REFN ESSN 1521-3773 JRNL PMID 27873437 JRNL DOI 10.1002/ANIE.201608951 REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0151 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.78 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 93.8 REMARK 3 NUMBER OF REFLECTIONS : 76541 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.149 REMARK 3 R VALUE (WORKING SET) : 0.148 REMARK 3 FREE R VALUE : 0.177 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2340 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.64 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5611 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.71 REMARK 3 BIN R VALUE (WORKING SET) : 0.2550 REMARK 3 BIN FREE R VALUE SET COUNT : 181 REMARK 3 BIN FREE R VALUE : 0.2770 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4154 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 104 REMARK 3 SOLVENT ATOMS : 807 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 10.11 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 12.57 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.66000 REMARK 3 B22 (A**2) : 0.10000 REMARK 3 B33 (A**2) : -0.75000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.075 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.077 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.056 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.699 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.969 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.957 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4398 ; 0.021 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 4007 ; 0.003 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5997 ; 1.986 ; 1.973 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9206 ; 1.113 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 536 ; 6.524 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 212 ;32.113 ;23.585 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 678 ;12.323 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 36 ;16.832 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 644 ; 0.127 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5017 ; 0.012 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1049 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2135 ; 1.035 ; 0.993 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2134 ; 1.011 ; 0.991 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2674 ; 1.539 ; 1.485 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2675 ; 1.540 ; 1.486 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2263 ; 2.321 ; 1.209 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2263 ; 2.321 ; 1.209 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3324 ; 3.543 ; 1.724 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 6135 ; 6.630 ;15.792 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 5579 ; 5.920 ;13.445 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5M0Z COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 07-OCT-16. REMARK 100 THE DEPOSITION ID IS D_1200001697. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-FEB-16 REMARK 200 TEMPERATURE (KELVIN) : 273.15 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM14 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.96863 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-225 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.5.21 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 76543 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 33.780 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.0 REMARK 200 DATA REDUNDANCY : 1.900 REMARK 200 R MERGE (I) : 0.06400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.2300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.66 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.0 REMARK 200 DATA REDUNDANCY IN SHELL : 1.90 REMARK 200 R MERGE FOR SHELL (I) : 0.43400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.810 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.6.1 REMARK 200 STARTING MODEL: 5M10 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.14 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.57 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM TRIS-HCL, 25 % PEG 6000, PH REMARK 280 8.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 77.71750 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 77.71750 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 34.60300 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 57.33850 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 34.60300 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 57.33850 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 77.71750 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 34.60300 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 57.33850 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 77.71750 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 34.60300 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 57.33850 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3140 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19800 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -13.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A1506 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 THR A 3 REMARK 465 THR A 4 REMARK 465 GLN A 5 REMARK 465 GLU A 535 REMARK 465 ARG A 536 REMARK 465 ALA A 537 REMARK 465 GLN A 538 REMARK 465 ALA A 539 REMARK 465 VAL A 540 REMARK 465 ALA A 541 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 829 O HOH A 1085 1.14 REMARK 500 O HOH A 1149 O HOH A 1366 1.35 REMARK 500 O HOH A 1026 O HOH A 1291 1.41 REMARK 500 O HOH A 1081 O HOH A 1191 1.43 REMARK 500 O HOH A 784 O HOH A 1145 1.50 REMARK 500 O HOH A 737 O HOH A 1310 1.52 REMARK 500 O HOH A 1029 O HOH A 1034 1.53 REMARK 500 O HOH A 945 O HOH A 1206 1.54 REMARK 500 O HOH A 769 O HOH A 1154 1.57 REMARK 500 O HOH A 702 O HOH A 1169 1.59 REMARK 500 O HOH A 955 O HOH A 1238 1.60 REMARK 500 O HOH A 1087 O HOH A 1390 1.61 REMARK 500 O HOH A 1042 O HOH A 1188 1.62 REMARK 500 O HOH A 769 O HOH A 813 1.68 REMARK 500 O HOH A 918 O HOH A 971 1.68 REMARK 500 O HOH A 970 O HOH A 1379 1.70 REMARK 500 O HOH A 1155 O HOH A 1347 1.71 REMARK 500 O HOH A 1014 O HOH A 1308 1.72 REMARK 500 O HOH A 1373 O HOH A 1432 1.75 REMARK 500 O HOH A 1081 O HOH A 1373 1.76 REMARK 500 O HOH A 1174 O HOH A 1362 1.78 REMARK 500 O HOH A 1260 O HOH A 1313 1.79 REMARK 500 O HOH A 1311 O HOH A 1414 1.80 REMARK 500 O HOH A 1046 O HOH A 1190 1.80 REMARK 500 O HOH A 712 O HOH A 963 1.81 REMARK 500 O HOH A 1015 O HOH A 1299 1.82 REMARK 500 O HOH A 1460 O HOH A 1496 1.83 REMARK 500 O HOH A 803 O HOH A 1451 1.86 REMARK 500 O HOH A 1136 O HOH A 1183 1.87 REMARK 500 O HOH A 767 O HOH A 1351 1.91 REMARK 500 O HOH A 1080 O HOH A 1296 1.93 REMARK 500 O HOH A 1300 O HOH A 1340 1.96 REMARK 500 O HOH A 1021 O HOH A 1132 1.97 REMARK 500 CB CYS A 214 O HOH A 1296 1.98 REMARK 500 O HOH A 1271 O HOH A 1379 1.99 REMARK 500 O HOH A 1033 O HOH A 1174 2.00 REMARK 500 O HOH A 754 O HOH A 1441 2.00 REMARK 500 O HOH A 1243 O HOH A 1384 2.02 REMARK 500 O HOH A 712 O HOH A 844 2.03 REMARK 500 O HOH A 742 O HOH A 1314 2.07 REMARK 500 SG CYS A 287 O HOH A 1345 2.13 REMARK 500 O HOH A 1098 O HOH A 1394 2.14 REMARK 500 OE1 GLN A 203 O HOH A 701 2.15 REMARK 500 O HOH A 813 O HOH A 844 2.17 REMARK 500 O HOH A 738 O HOH A 999 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 1141 O HOH A 1287 8545 1.88 REMARK 500 O HOH A 1348 O HOH A 1351 8445 2.04 REMARK 500 O HOH A 1045 O HOH A 1408 8445 2.12 REMARK 500 O HOH A 1290 O HOH A 1468 3554 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ARG A 125 CZ ARG A 125 NH1 0.108 REMARK 500 GLU A 334 CD GLU A 334 OE2 0.103 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 66 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 ARG A 104 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG A 125 NE - CZ - NH1 ANGL. DEV. = 6.0 DEGREES REMARK 500 ARG A 125 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 ARG A 125 NE - CZ - NH2 ANGL. DEV. = -11.1 DEGREES REMARK 500 ARG A 137 NE - CZ - NH1 ANGL. DEV. = -3.7 DEGREES REMARK 500 ARG A 148 NE - CZ - NH1 ANGL. DEV. = 4.3 DEGREES REMARK 500 ARG A 148 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES REMARK 500 ARG A 180 NE - CZ - NH1 ANGL. DEV. = -3.1 DEGREES REMARK 500 ARG A 395 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 ARG A 395 NE - CZ - NH2 ANGL. DEV. = -5.4 DEGREES REMARK 500 ARG A 516 NE - CZ - NH1 ANGL. DEV. = 4.6 DEGREES REMARK 500 ARG A 516 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 ARG A 528 NE - CZ - NH2 ANGL. DEV. = 4.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 65 68.29 -100.73 REMARK 500 ALA A 142 64.46 -108.03 REMARK 500 ASN A 277 130.75 102.75 REMARK 500 ALA A 327 16.38 -148.00 REMARK 500 ALA A 379 49.97 -96.98 REMARK 500 VAL A 385 -66.06 69.72 REMARK 500 ASP A 490 76.60 27.91 REMARK 500 ASP A 490 79.58 27.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1506 DISTANCE = 6.13 ANGSTROMS REMARK 525 HOH A1507 DISTANCE = 7.09 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FAD A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA7 A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 604 DBREF 5M0Z A 1 541 PDB 5M0Z 5M0Z 1 541 SEQRES 1 A 541 MET SER THR THR GLN THR PRO ASP LEU ASP ALA ILE VAL SEQRES 2 A 541 ILE GLY ALA GLY PHE GLY GLY ILE TYR MET LEU HIS LYS SEQRES 3 A 541 LEU ARG ASN ASP LEU GLY LEU SER VAL ARG VAL PHE GLU SEQRES 4 A 541 LYS GLY GLY GLY VAL GLY GLY THR TRP TYR TRP ASN LYS SEQRES 5 A 541 TYR PRO GLY ALA LYS SER ASP THR GLU GLY PHE VAL TYR SEQRES 6 A 541 ARG TYR SER PHE ASP LYS GLU LEU LEU ARG GLU TYR ASP SEQRES 7 A 541 TRP THR THR ARG TYR LEU ASP GLN PRO ASP VAL LEU ALA SEQRES 8 A 541 TYR LEU GLU HIS VAL VAL GLU ARG TYR ASP LEU ALA ARG SEQRES 9 A 541 ASP ILE GLN LEU ASN THR GLU VAL THR ASP ALA ILE PHE SEQRES 10 A 541 ASP GLU GLU THR GLU LEU TRP ARG VAL THR THR ALA GLY SEQRES 11 A 541 GLY GLU THR LEU THR ALA ARG PHE LEU VAL THR ALA LEU SEQRES 12 A 541 GLY LEU LEU SER ARG SER ASN ILE PRO ASP ILE PRO GLY SEQRES 13 A 541 ARG ASP SER PHE ALA GLY ARG LEU VAL HIS THR ASN ALA SEQRES 14 A 541 TRP PRO GLU ASP LEU ASP ILE THR GLY LYS ARG VAL GLY SEQRES 15 A 541 VAL ILE GLY THR GLY SER THR GLY THR GLN PHE ILE VAL SEQRES 16 A 541 ALA ALA ALA LYS MET ALA GLU GLN LEU THR VAL PHE GLN SEQRES 17 A 541 ARG THR PRO GLN TYR CYS VAL PRO SER GLY ASN GLY PRO SEQRES 18 A 541 MET ASP PRO ASP GLU VAL ALA ARG ILE LYS GLN ASN PHE SEQRES 19 A 541 ASP SER ILE TRP ASP GLN VAL ARG SER SER THR VAL ALA SEQRES 20 A 541 PHE GLY PHE GLU GLU SER THR VAL GLU ALA MET SER VAL SEQRES 21 A 541 SER GLU SER GLU ARG GLN ARG VAL PHE GLN GLN ALA TRP SEQRES 22 A 541 ASP LYS GLY ASN GLY PHE ARG PHE MET PHE GLY THR PHE SEQRES 23 A 541 CYS ASP ILE ALA THR ASN PRO GLU ALA ASN ALA ALA ALA SEQRES 24 A 541 ALA ALA PHE ILE ARG SER LYS ILE ALA GLU ILE VAL LYS SEQRES 25 A 541 ASP PRO GLU THR ALA ARG LYS LEU THR PRO THR ASP LEU SEQRES 26 A 541 TYR ALA LYS ARG PRO LEU CYS ASN GLU GLY TYR TYR GLU SEQRES 27 A 541 THR TYR ASN ARG ASP ASN VAL SER LEU VAL SER LEU LYS SEQRES 28 A 541 GLU THR PRO ILE GLU GLU ILE VAL PRO GLN GLY VAL ARG SEQRES 29 A 541 THR SER ASP GLY VAL VAL HIS GLU LEU ASP VAL LEU VAL SEQRES 30 A 541 PHE ALA THR GLY PHE ASP ALA VAL ASP GLY ASN TYR ARG SEQRES 31 A 541 ALA MET ASN LEU ARG GLY ARG ASP GLY ARG HIS ILE ASN SEQRES 32 A 541 GLU HIS TRP THR GLU GLY PRO THR SER TYR LEU GLY VAL SEQRES 33 A 541 THR LYS ALA GLY PHE PRO ASN MET PHE MET ILE LEU GLY SEQRES 34 A 541 PRO ASN GLY PRO PHE THR ASN LEU PRO PRO SER ILE GLU SEQRES 35 A 541 ALA GLN VAL GLU TRP ILE SER ASP LEU ILE ASP LYS ALA SEQRES 36 A 541 THR ARG GLU GLY LEU THR THR VAL GLU PRO THR ALA ASP SEQRES 37 A 541 ALA GLU ARG GLU TRP THR GLU THR CYS ALA GLU ILE ALA SEQRES 38 A 541 ASN MET THR LEU PHE PRO LYS ALA ASP SER TRP ILE PHE SEQRES 39 A 541 GLY ALA ASN ILE PRO GLY LYS ARG HIS ALA VAL MET PHE SEQRES 40 A 541 TYR LEU GLY GLY LEU GLY ASN TYR ARG ARG GLN LEU ALA SEQRES 41 A 541 ASP VAL ALA ASP GLY GLY TYR ARG GLY PHE GLN LEU ARG SEQRES 42 A 541 GLY GLU ARG ALA GLN ALA VAL ALA HET FAD A 601 53 HET NA7 A 602 39 HET GOL A 603 6 HET GOL A 604 6 HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE HETNAM NA7 [(2R,3R,4R,5R)-5-(6-AMINO-9H-PURIN-9-YL)-3-HYDROXY-4- HETNAM 2 NA7 (PHOSPHONOOXY)TETRAHYDROFURAN-2-YL]METHYL [(2R,3S,4S)- HETNAM 3 NA7 3,4-DIHYDROXYTETRAHYDROFURAN-2-YL]METHYL DIHYDROGEN HETNAM 4 NA7 DIPHOSPHATE HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 FAD C27 H33 N9 O15 P2 FORMUL 3 NA7 C15 H24 N5 O16 P3 FORMUL 4 GOL 2(C3 H8 O3) FORMUL 6 HOH *807(H2 O) HELIX 1 AA1 GLY A 17 ASN A 29 1 13 HELIX 2 AA2 GLY A 46 ASN A 51 1 6 HELIX 3 AA3 GLU A 61 TYR A 65 5 5 HELIX 4 AA4 ASP A 70 TYR A 77 1 8 HELIX 5 AA5 ASP A 85 TYR A 100 1 16 HELIX 6 AA6 LEU A 102 ARG A 104 5 3 HELIX 7 AA7 GLY A 156 PHE A 160 5 5 HELIX 8 AA8 ASN A 168 TRP A 170 5 3 HELIX 9 AA9 GLY A 187 LYS A 199 1 13 HELIX 10 AB1 ASP A 223 ASN A 233 1 11 HELIX 11 AB2 ASN A 233 SER A 244 1 12 HELIX 12 AB3 GLU A 256 VAL A 260 5 5 HELIX 13 AB4 SER A 261 GLY A 276 1 16 HELIX 14 AB5 ASN A 277 GLY A 284 1 8 HELIX 15 AB6 ASN A 292 VAL A 311 1 20 HELIX 16 AB7 ASP A 313 THR A 321 1 9 HELIX 17 AB8 GLY A 335 TYR A 340 1 6 HELIX 18 AB9 ASP A 386 ALA A 391 1 6 HELIX 19 AC1 GLY A 396 ARG A 400 5 5 HELIX 20 AC2 HIS A 401 TRP A 406 1 6 HELIX 21 AC3 ASN A 436 GLY A 459 1 24 HELIX 22 AC4 THR A 466 ASN A 482 1 17 HELIX 23 AC5 MET A 483 THR A 484 5 2 HELIX 24 AC6 LEU A 485 ALA A 489 5 5 HELIX 25 AC7 SER A 491 GLY A 495 5 5 HELIX 26 AC8 GLY A 511 GLY A 525 1 15 SHEET 1 AA1 7 ILE A 106 GLN A 107 0 SHEET 2 AA1 7 VAL A 35 PHE A 38 1 N VAL A 37 O GLN A 107 SHEET 3 AA1 7 LEU A 9 ILE A 14 1 N VAL A 13 O ARG A 36 SHEET 4 AA1 7 THR A 133 THR A 141 1 O PHE A 138 N ASP A 10 SHEET 5 AA1 7 LEU A 123 THR A 128 -1 N TRP A 124 O ALA A 136 SHEET 6 AA1 7 VAL A 112 ASP A 118 -1 N ILE A 116 O ARG A 125 SHEET 7 AA1 7 ASN A 393 ARG A 395 1 O ASN A 393 N THR A 113 SHEET 1 AA2 5 ILE A 106 GLN A 107 0 SHEET 2 AA2 5 VAL A 35 PHE A 38 1 N VAL A 37 O GLN A 107 SHEET 3 AA2 5 LEU A 9 ILE A 14 1 N VAL A 13 O ARG A 36 SHEET 4 AA2 5 THR A 133 THR A 141 1 O PHE A 138 N ASP A 10 SHEET 5 AA2 5 MET A 424 MET A 426 1 O PHE A 425 N LEU A 139 SHEET 1 AA3 5 ARG A 163 HIS A 166 0 SHEET 2 AA3 5 VAL A 375 PHE A 378 1 O PHE A 378 N VAL A 165 SHEET 3 AA3 5 ARG A 180 ILE A 184 1 N GLY A 182 O VAL A 377 SHEET 4 AA3 5 GLN A 203 GLN A 208 1 O PHE A 207 N VAL A 183 SHEET 5 AA3 5 VAL A 345 SER A 349 1 O VAL A 348 N VAL A 206 SHEET 1 AA4 2 CYS A 214 PRO A 216 0 SHEET 2 AA4 2 LEU A 331 ASN A 333 1 O ASN A 333 N VAL A 215 SHEET 1 AA5 3 ILE A 355 VAL A 359 0 SHEET 2 AA5 3 GLY A 362 THR A 365 -1 O ARG A 364 N GLU A 357 SHEET 3 AA5 3 VAL A 370 GLU A 372 -1 O HIS A 371 N VAL A 363 SHEET 1 AA6 2 GLY A 432 PRO A 433 0 SHEET 2 AA6 2 PHE A 507 TYR A 508 1 O TYR A 508 N GLY A 432 SHEET 1 AA7 2 THR A 462 PRO A 465 0 SHEET 2 AA7 2 PHE A 530 ARG A 533 -1 O GLN A 531 N GLU A 464 SITE 1 AC1 40 ILE A 14 GLY A 15 GLY A 17 PHE A 18 SITE 2 AC1 40 GLY A 19 GLU A 39 LYS A 40 GLY A 46 SITE 3 AC1 40 THR A 47 TRP A 48 TRP A 50 TYR A 53 SITE 4 AC1 40 SER A 58 ASP A 59 THR A 60 TYR A 65 SITE 5 AC1 40 THR A 110 GLU A 111 VAL A 112 ALA A 142 SITE 6 AC1 40 LEU A 143 GLY A 144 SER A 147 ASN A 388 SITE 7 AC1 40 MET A 392 LEU A 428 ASN A 436 LEU A 437 SITE 8 AC1 40 NA7 A 602 HOH A 712 HOH A 752 HOH A 844 SITE 9 AC1 40 HOH A 856 HOH A 864 HOH A 935 HOH A1011 SITE 10 AC1 40 HOH A1061 HOH A1068 HOH A1154 HOH A1180 SITE 1 AC2 38 LEU A 146 PRO A 152 ILE A 184 GLY A 185 SITE 2 AC2 38 THR A 186 GLY A 187 SER A 188 THR A 189 SITE 3 AC2 38 ARG A 209 THR A 210 ARG A 329 ALA A 379 SITE 4 AC2 38 THR A 380 GLY A 381 PHE A 382 TRP A 492 SITE 5 AC2 38 FAD A 601 HOH A 711 HOH A 731 HOH A 774 SITE 6 AC2 38 HOH A 812 HOH A 856 HOH A 875 HOH A 892 SITE 7 AC2 38 HOH A 897 HOH A 946 HOH A 965 HOH A 968 SITE 8 AC2 38 HOH A 989 HOH A 997 HOH A1022 HOH A1043 SITE 9 AC2 38 HOH A1096 HOH A1101 HOH A1109 HOH A1148 SITE 10 AC2 38 HOH A1204 HOH A1273 SITE 1 AC3 9 ASP A 114 ILE A 116 GLY A 162 ARG A 163 SITE 2 AC3 9 LEU A 164 HOH A 714 HOH A 859 HOH A 940 SITE 3 AC3 9 HOH A1125 SITE 1 AC4 5 ARG A 36 PHE A 38 GLN A 107 GLU A 132 SITE 2 AC4 5 HOH A1070 CRYST1 69.206 114.677 155.435 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014450 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008720 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006434 0.00000