HEADER HYDROLASE 14-OCT-16 5M35 TITLE THE MOLECULAR TWEEZER CLR01 STABILIZES A DISORDERED PROTEIN-PROTEIN TITLE 2 INTERFACE COMPND MOL_ID: 1; COMPND 2 MOLECULE: 14-3-3 PROTEIN ZETA/DELTA; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: PROTEIN KINASE C INHIBITOR PROTEIN 1,KCIP-1; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: M-PHASE INDUCER PHOSPHATASE 3; COMPND 8 CHAIN: C; COMPND 9 SYNONYM: DUAL SPECIFICITY PHOSPHATASE CDC25C; COMPND 10 EC: 3.1.3.48; COMPND 11 ENGINEERED: YES; COMPND 12 MOL_ID: 3; COMPND 13 MOLECULE: M-PHASE INDUCER PHOSPHATASE 3; COMPND 14 CHAIN: D; COMPND 15 SYNONYM: DUAL SPECIFICITY PHOSPHATASE CDC25C; COMPND 16 EC: 3.1.3.48; COMPND 17 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: YWHAZ; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606; SOURCE 13 MOL_ID: 3; SOURCE 14 SYNTHETIC: YES; SOURCE 15 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 16 ORGANISM_COMMON: HUMAN; SOURCE 17 ORGANISM_TAXID: 9606 KEYWDS STABILIZATION, 14-3-3, DISORDERED PPI INTERFACE, CDC25C, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR D.BIER,C.OTTMANN REVDAT 4 17-JAN-24 5M35 1 REMARK REVDAT 3 12-DEC-18 5M35 1 SOURCE LINK ATOM REVDAT 2 22-NOV-17 5M35 1 JRNL REVDAT 1 15-NOV-17 5M35 0 SPRSDE 15-NOV-17 5M35 5JIT JRNL AUTH D.BIER,S.MITTAL,K.BRAVO-RODRIGUEZ,A.SOWISLOK,X.GUILLORY, JRNL AUTH 2 J.BRIELS,C.HEID,M.BARTEL,B.WETTIG,L.BRUNSVELD, JRNL AUTH 3 E.SANCHEZ-GARCIA,T.SCHRADER,C.OTTMANN JRNL TITL THE MOLECULAR TWEEZER CLR01 STABILIZES A DISORDERED JRNL TITL 2 PROTEIN-PROTEIN INTERFACE. JRNL REF J. AM. CHEM. SOC. V. 139 16256 2017 JRNL REFN ESSN 1520-5126 JRNL PMID 29039919 JRNL DOI 10.1021/JACS.7B07939 REMARK 2 REMARK 2 RESOLUTION. 2.38 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.38 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.85 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 33123 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.227 REMARK 3 R VALUE (WORKING SET) : 0.224 REMARK 3 FREE R VALUE : 0.277 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1746 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.38 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.44 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2126 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.3370 REMARK 3 BIN FREE R VALUE SET COUNT : 112 REMARK 3 BIN FREE R VALUE : 0.4500 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3655 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 30 REMARK 3 SOLVENT ATOMS : 119 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 58.91 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 56.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.44000 REMARK 3 B22 (A**2) : 3.60000 REMARK 3 B33 (A**2) : -3.17000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.252 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.228 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.189 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.108 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.950 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.926 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3765 ; 0.021 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 8 ; 0.016 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5075 ; 1.900 ; 1.981 REMARK 3 BOND ANGLES OTHERS (DEGREES): 16 ; 1.034 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 469 ;15.346 ; 5.085 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 181 ;40.410 ;25.249 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 678 ;21.123 ;15.044 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 23 ;15.705 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 564 ; 0.133 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2817 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2346 ; 1.111 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3736 ; 2.140 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1419 ; 3.189 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1338 ; 5.159 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 5M35 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 14-OCT-16. REMARK 100 THE DEPOSITION ID IS D_1200001815. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-MAR-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.99983 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XSCALE REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 35499 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.380 REMARK 200 RESOLUTION RANGE LOW (A) : 44.850 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 6.400 REMARK 200 R MERGE (I) : 0.06600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.7600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.38 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.50 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.59800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.110 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.3.0, PHASER REMARK 200 STARTING MODEL: 3NKX REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 68.80 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.94 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.17 M AMMONIUM ACETATE; 0.085 M REMARK 280 SODIUM CITRATE PH 5.6; 25.5%(W/V) PEG 4000; 15%(V/V) GLYCEROL, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 36.11050 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 57.22550 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 52.03750 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 57.22550 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 36.11050 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 52.03750 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4800 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22840 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -26.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR A 205 REMARK 465 GLY B 71 REMARK 465 ALA B 72 REMARK 465 THR B 205 REMARK 465 LEU B 206 REMARK 465 SER B 207 REMARK 465 GLU B 208 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 2 CG OD1 OD2 REMARK 470 LYS A 3 CG CD CE NZ REMARK 470 LYS A 9 CD CE NZ REMARK 470 GLN A 67 CG CD OE1 NE2 REMARK 470 LYS A 68 CE NZ REMARK 470 GLU A 70 CG CD OE1 OE2 REMARK 470 GLU A 73 CG CD OE1 OE2 REMARK 470 LYS A 75 CG CD CE NZ REMARK 470 GLN A 77 CD OE1 NE2 REMARK 470 LYS A 103 CD CE NZ REMARK 470 LYS A 157 CE NZ REMARK 470 LEU A 206 CG CD1 CD2 REMARK 470 GLU A 208 CG CD OE1 OE2 REMARK 470 GLU A 209 CG CD OE1 OE2 REMARK 470 TYR A 211 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS A 212 CG CD CE NZ REMARK 470 LYS B 3 CG CD CE NZ REMARK 470 LYS B 68 CG CD CE NZ REMARK 470 GLU B 70 CG CD OE1 OE2 REMARK 470 GLU B 73 CG CD OE1 OE2 REMARK 470 LYS B 74 CG CD CE NZ REMARK 470 LYS B 75 NZ REMARK 470 ARG B 80 CD NE CZ NH1 NH2 REMARK 470 ALA B 134 CB REMARK 470 ASP B 136 CG OD1 OD2 REMARK 470 LYS B 139 CG CD CE NZ REMARK 470 LYS B 157 CD CE NZ REMARK 470 LYS B 158 CG CD CE NZ REMARK 470 GLU B 202 OE1 OE2 REMARK 470 LYS B 212 CG CD CE NZ REMARK 470 GLU C 219 CG CD OE1 OE2 REMARK 470 GLU D 219 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CD2 PHE A 174 CD1 LEU A 191 2.08 REMARK 500 CA LYS B 74 O HOH B 403 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 3 -17.31 -145.26 REMARK 500 ARG A 18 76.63 -106.19 REMARK 500 THR A 69 68.35 -105.11 REMARK 500 GLU A 73 -58.92 -126.57 REMARK 500 ALA A 134 -166.66 -107.70 REMARK 500 ASP A 137 -15.90 -140.86 REMARK 500 SER A 184 73.12 -114.54 REMARK 500 GLU B 66 -0.17 -58.43 REMARK 500 PHE B 104 -62.32 -127.60 REMARK 500 ALA B 134 66.23 -103.49 REMARK 500 GLU B 202 30.79 -90.33 REMARK 500 SEP D 216 -169.13 -100.66 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residues BEZ A 302 and BEZ B REMARK 800 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residues BEZ A 302 and BEZ B REMARK 800 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residues BEZ A 302 and BEZ B REMARK 800 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residues BEZ A 302 and BEZ B REMARK 800 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residues BEZ A 302 and BEZ B REMARK 800 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residues BEZ A 302 and BEZ B REMARK 800 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residues BEZ A 302 and BEZ B REMARK 800 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residues BEZ A 302 and BEZ B REMARK 800 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residues BEZ A 302 and BEZ B REMARK 800 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residues BEZ A 302 and BEZ B REMARK 800 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residues BEZ A 302 and BEZ B REMARK 800 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residues BEZ A 302 and BEZ B REMARK 800 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residues BEZ A 302 and BEZ B REMARK 800 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residues BEZ A 302 and BEZ B REMARK 800 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residues BEZ A 302 and BEZ B REMARK 800 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residues BEZ A 302 and BEZ B REMARK 800 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residues BEZ A 302 and BEZ B REMARK 800 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residues BEZ A 302 and BEZ B REMARK 800 302 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5EWZ RELATED DB: PDB REMARK 900 RELATED ID: 3UX0 RELATED DB: PDB REMARK 900 RELATED ID: 5EXA RELATED DB: PDB DBREF 5M35 A 2 230 UNP P63104 1433Z_HUMAN 2 230 DBREF 5M35 B 2 230 UNP P63104 1433Z_HUMAN 2 230 DBREF 5M35 C 211 220 UNP P30307 MPIP3_HUMAN 211 220 DBREF 5M35 D 213 219 UNP P30307 MPIP3_HUMAN 213 219 SEQRES 1 A 229 ASP LYS ASN GLU LEU VAL GLN LYS ALA LYS LEU ALA GLU SEQRES 2 A 229 GLN ALA GLU ARG TYR ASP ASP MET ALA ALA CSO MET LYS SEQRES 3 A 229 SER VAL THR GLU GLN GLY ALA GLU LEU SER ASN GLU GLU SEQRES 4 A 229 ARG ASN LEU LEU SER VAL ALA TYR LYS ASN VAL VAL GLY SEQRES 5 A 229 ALA ARG ARG SER SER TRP ARG VAL VAL SER SER ILE GLU SEQRES 6 A 229 GLN LYS THR GLU GLY ALA GLU LYS LYS GLN GLN MET ALA SEQRES 7 A 229 ARG GLU TYR ARG GLU LYS ILE GLU THR GLU LEU ARG ASP SEQRES 8 A 229 ILE CYS ASN ASP VAL LEU SER LEU LEU GLU LYS PHE LEU SEQRES 9 A 229 ILE PRO ASN ALA SER GLN ALA GLU SER LYS VAL PHE TYR SEQRES 10 A 229 LEU LYS MET LYS GLY ASP TYR TYR ARG TYR LEU ALA GLU SEQRES 11 A 229 VAL ALA ALA GLY ASP ASP LYS LYS GLY ILE VAL ASP GLN SEQRES 12 A 229 SER GLN GLN ALA TYR GLN GLU ALA PHE GLU ILE SER LYS SEQRES 13 A 229 LYS GLU MET GLN PRO THR HIS PRO ILE ARG LEU GLY LEU SEQRES 14 A 229 ALA LEU ASN PHE SER VAL PHE TYR TYR GLU ILE LEU ASN SEQRES 15 A 229 SER PRO GLU LYS ALA CYS SER LEU ALA LYS THR ALA PHE SEQRES 16 A 229 ASP GLU ALA ILE ALA GLU LEU ASP THR LEU SER GLU GLU SEQRES 17 A 229 SER TYR LYS ASP SER THR LEU ILE MET GLN LEU LEU ARG SEQRES 18 A 229 ASP ASN LEU THR LEU TRP THR SER SEQRES 1 B 229 ASP LYS ASN GLU LEU VAL GLN LYS ALA LYS LEU ALA GLU SEQRES 2 B 229 GLN ALA GLU ARG TYR ASP ASP MET ALA ALA CSO MET LYS SEQRES 3 B 229 SER VAL THR GLU GLN GLY ALA GLU LEU SER ASN GLU GLU SEQRES 4 B 229 ARG ASN LEU LEU SER VAL ALA TYR LYS ASN VAL VAL GLY SEQRES 5 B 229 ALA ARG ARG SER SER TRP ARG VAL VAL SER SER ILE GLU SEQRES 6 B 229 GLN LYS THR GLU GLY ALA GLU LYS LYS GLN GLN MET ALA SEQRES 7 B 229 ARG GLU TYR ARG GLU LYS ILE GLU THR GLU LEU ARG ASP SEQRES 8 B 229 ILE CYS ASN ASP VAL LEU SER LEU LEU GLU LYS PHE LEU SEQRES 9 B 229 ILE PRO ASN ALA SER GLN ALA GLU SER LYS VAL PHE TYR SEQRES 10 B 229 LEU LYS MET LYS GLY ASP TYR TYR ARG TYR LEU ALA GLU SEQRES 11 B 229 VAL ALA ALA GLY ASP ASP LYS LYS GLY ILE VAL ASP GLN SEQRES 12 B 229 SER GLN GLN ALA TYR GLN GLU ALA PHE GLU ILE SER LYS SEQRES 13 B 229 LYS GLU MET GLN PRO THR HIS PRO ILE ARG LEU GLY LEU SEQRES 14 B 229 ALA LEU ASN PHE SER VAL PHE TYR TYR GLU ILE LEU ASN SEQRES 15 B 229 SER PRO GLU LYS ALA CYS SER LEU ALA LYS THR ALA PHE SEQRES 16 B 229 ASP GLU ALA ILE ALA GLU LEU ASP THR LEU SER GLU GLU SEQRES 17 B 229 SER TYR LYS ASP SER THR LEU ILE MET GLN LEU LEU ARG SEQRES 18 B 229 ASP ASN LEU THR LEU TRP THR SER SEQRES 1 C 10 LEU TYR ARG SER PRO SEP MET PRO GLU ASN SEQRES 1 D 7 ARG SER PRO SEP MET PRO GLU MODRES 5M35 CSO A 25 CYS MODIFIED RESIDUE MODRES 5M35 CSO B 25 CYS MODIFIED RESIDUE MODRES 5M35 SEP C 216 SER MODIFIED RESIDUE MODRES 5M35 SEP D 216 SER MODIFIED RESIDUE HET CSO A 25 7 HET CSO B 25 7 HET SEP C 216 10 HET SEP D 216 10 HET GOL A 301 6 HET BEZ A 302 9 HET GOL B 301 6 HET BEZ B 302 9 HETNAM CSO S-HYDROXYCYSTEINE HETNAM SEP PHOSPHOSERINE HETNAM GOL GLYCEROL HETNAM BEZ BENZOIC ACID HETSYN SEP PHOSPHONOSERINE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 CSO 2(C3 H7 N O3 S) FORMUL 3 SEP 2(C3 H8 N O6 P) FORMUL 5 GOL 2(C3 H8 O3) FORMUL 6 BEZ 2(C7 H6 O2) FORMUL 9 HOH *119(H2 O) HELIX 1 AA1 LYS A 3 ALA A 16 1 14 HELIX 2 AA2 ARG A 18 GLU A 31 1 14 HELIX 3 AA3 SER A 37 THR A 69 1 33 HELIX 4 AA4 GLU A 73 PHE A 104 1 32 HELIX 5 AA5 GLN A 111 VAL A 132 1 22 HELIX 6 AA6 ASP A 137 MET A 160 1 24 HELIX 7 AA7 HIS A 164 ILE A 181 1 18 HELIX 8 AA8 SER A 184 GLU A 202 1 19 HELIX 9 AA9 SER A 207 TRP A 228 1 22 HELIX 10 AB1 LYS B 3 ALA B 16 1 14 HELIX 11 AB2 ARG B 18 GLN B 32 1 15 HELIX 12 AB3 SER B 37 THR B 69 1 33 HELIX 13 AB4 LYS B 74 PHE B 104 1 31 HELIX 14 AB5 GLN B 111 GLU B 131 1 21 HELIX 15 AB6 ASP B 137 MET B 160 1 24 HELIX 16 AB7 HIS B 164 ILE B 181 1 18 HELIX 17 AB8 SER B 184 GLU B 202 1 19 HELIX 18 AB9 SER B 210 THR B 229 1 20 LINK C ALA A 24 N CSO A 25 1555 1555 1.33 LINK C CSO A 25 N MET A 26 1555 1555 1.33 LINK C ALA B 24 N CSO B 25 1555 1555 1.33 LINK C CSO B 25 N MET B 26 1555 1555 1.33 LINK C PRO C 215 N SEP C 216 1555 1555 1.32 LINK C SEP C 216 N MET C 217 1555 1555 1.32 LINK C PRO D 215 N SEP D 216 1555 1555 1.33 LINK C SEP D 216 N MET D 217 1555 1555 1.32 SITE 1 AC1 2 TYR A 82 LYS B 9 SITE 1 AC2 2 TYR B 82 LYS B 85 SITE 1 AC3 4 PHE A 196 ARG A 222 GLN B 219 ARG B 222 SITE 1 AC4 4 PHE A 196 ARG A 222 GLN B 219 ARG B 222 SITE 1 AC5 4 PHE A 196 ARG A 222 GLN B 219 ARG B 222 SITE 1 AC6 4 PHE A 196 ARG A 222 GLN B 219 ARG B 222 SITE 1 AC7 4 PHE A 196 ARG A 222 GLN B 219 ARG B 222 SITE 1 AC8 4 PHE A 196 ARG A 222 GLN B 219 ARG B 222 SITE 1 AC9 4 PHE A 196 ARG A 222 GLN B 219 ARG B 222 SITE 1 AD1 4 PHE A 196 ARG A 222 GLN B 219 ARG B 222 SITE 1 AD2 4 PHE A 196 ARG A 222 GLN B 219 ARG B 222 SITE 1 AD3 4 PHE A 196 ARG A 222 GLN B 219 ARG B 222 SITE 1 AD4 4 PHE A 196 ARG A 222 GLN B 219 ARG B 222 SITE 1 AD5 4 PHE A 196 ARG A 222 GLN B 219 ARG B 222 SITE 1 AD6 4 PHE A 196 ARG A 222 GLN B 219 ARG B 222 SITE 1 AD7 4 PHE A 196 ARG A 222 GLN B 219 ARG B 222 SITE 1 AD8 4 PHE A 196 ARG A 222 GLN B 219 ARG B 222 SITE 1 AD9 4 PHE A 196 ARG A 222 GLN B 219 ARG B 222 SITE 1 AE1 4 PHE A 196 ARG A 222 GLN B 219 ARG B 222 SITE 1 AE2 4 PHE A 196 ARG A 222 GLN B 219 ARG B 222 CRYST1 72.221 104.075 114.451 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013846 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009608 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008737 0.00000