HEADER TOXIN 17-OCT-16 5M41 TITLE CRYSTAL STRUCTURE OF NIGRITOXINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: NIGRITOXINE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: VIBRIO NIGRIPULCHRITUDO; SOURCE 3 ORGANISM_TAXID: 28173; SOURCE 4 GENE: VIBNI_0175; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TOXIN, NEW FOLD, ARTHROPOD EXPDTA X-RAY DIFFRACTION AUTHOR M.CZJZEK,L.LABREUCHE,A.JEUDY,F.LE ROUX REVDAT 2 08-MAY-24 5M41 1 LINK REVDAT 1 06-DEC-17 5M41 0 JRNL AUTH Y.LABREUCHE,S.CHENIVESSE,A.JEUDY,S.LE PANSE,V.BOULO, JRNL AUTH 2 D.ANSQUER,S.PAGES,A.GIVAUDAN,M.CZJZEK,F.LE ROUX JRNL TITL NIGRITOXIN IS A BACTERIAL TOXIN FOR CRUSTACEANS AND INSECTS. JRNL REF NAT COMMUN V. 8 1248 2017 JRNL REFN ESSN 2041-1723 JRNL PMID 29093459 JRNL DOI 10.1038/S41467-017-01445-Z REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 58.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 57805 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.195 REMARK 3 R VALUE (WORKING SET) : 0.193 REMARK 3 FREE R VALUE : 0.226 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3069 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.16 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4120 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.86 REMARK 3 BIN R VALUE (WORKING SET) : 0.2310 REMARK 3 BIN FREE R VALUE SET COUNT : 234 REMARK 3 BIN FREE R VALUE : 0.2530 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5520 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 1 REMARK 3 SOLVENT ATOMS : 227 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 56.34 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.169 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.153 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.107 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.783 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.956 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.941 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5637 ; 0.010 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 44 ; 0.006 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7624 ; 1.283 ; 1.953 REMARK 3 BOND ANGLES OTHERS (DEGREES): 98 ; 0.910 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 714 ; 5.631 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 277 ;34.210 ;25.018 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 971 ;15.040 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 35 ;17.899 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 840 ; 0.083 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4348 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 14 ; 0.000 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 18 A 267 REMARK 3 ORIGIN FOR THE GROUP (A): -4.0500 108.1520 -40.3910 REMARK 3 T TENSOR REMARK 3 T11: 0.0616 T22: 0.1363 REMARK 3 T33: 0.0395 T12: 0.0497 REMARK 3 T13: -0.0176 T23: 0.0261 REMARK 3 L TENSOR REMARK 3 L11: 0.3514 L22: 0.7017 REMARK 3 L33: 0.5972 L12: 0.0954 REMARK 3 L13: 0.2064 L23: 0.4160 REMARK 3 S TENSOR REMARK 3 S11: -0.0405 S12: 0.0378 S13: 0.1084 REMARK 3 S21: -0.0891 S22: 0.0009 S23: 0.0483 REMARK 3 S31: -0.0164 S32: -0.0077 S33: 0.0396 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 274 A 460 REMARK 3 ORIGIN FOR THE GROUP (A): 20.6120 121.7800 -15.6060 REMARK 3 T TENSOR REMARK 3 T11: 0.0433 T22: 0.1138 REMARK 3 T33: 0.0535 T12: 0.0293 REMARK 3 T13: -0.0285 T23: 0.0266 REMARK 3 L TENSOR REMARK 3 L11: 1.7957 L22: 1.1247 REMARK 3 L33: 1.3277 L12: 1.3875 REMARK 3 L13: 0.9937 L23: 0.9415 REMARK 3 S TENSOR REMARK 3 S11: 0.1116 S12: -0.0551 S13: -0.1380 REMARK 3 S21: 0.0503 S22: -0.0790 S23: -0.1040 REMARK 3 S31: -0.0434 S32: -0.0193 S33: -0.0326 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 461 A 753 REMARK 3 ORIGIN FOR THE GROUP (A): 34.3440 135.4850 14.0830 REMARK 3 T TENSOR REMARK 3 T11: 0.0926 T22: 0.1449 REMARK 3 T33: 0.0496 T12: -0.1126 REMARK 3 T13: 0.0254 T23: -0.0275 REMARK 3 L TENSOR REMARK 3 L11: 0.5553 L22: 0.4474 REMARK 3 L33: 1.2893 L12: 0.2529 REMARK 3 L13: -0.2871 L23: -0.5083 REMARK 3 S TENSOR REMARK 3 S11: 0.0228 S12: -0.0103 S13: -0.0019 REMARK 3 S21: 0.0566 S22: -0.0133 S23: 0.0319 REMARK 3 S31: -0.1644 S32: 0.1552 S33: -0.0095 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 5M41 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 18-OCT-16. REMARK 100 THE DEPOSITION ID IS D_1200001793. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-MAR-14; 12-SEP-14 REMARK 200 TEMPERATURE (KELVIN) : 100; 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y REMARK 200 RADIATION SOURCE : SOLEIL; ESRF REMARK 200 BEAMLINE : PROXIMA 2; ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979; 1.0332 REMARK 200 MONOCHROMATOR : NULL; NULL REMARK 200 OPTICS : NULL; NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL; PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M; DECTRIS REMARK 200 PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 57805 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 58.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 3.400 REMARK 200 R MERGE (I) : 0.05200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.20 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.7 REMARK 200 DATA REDUNDANCY IN SHELL : 3.30 REMARK 200 R MERGE FOR SHELL (I) : 0.33000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELXDE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.65 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.38 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2 MICROL OF PROTEIN WITH 1 MICROL OF REMARK 280 RESERVOIR SOLUTION, CONTAINING 100 MM BIS-TRIS PROPANE BUFFER AT REMARK 280 PH 8.5, 24 % (W/V) PEG 3350, 0.1 M SODIUM FLUORATE, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z,-X,-Y REMARK 290 7555 -Z,-X,Y REMARK 290 8555 -Z,X,-Y REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z,-X REMARK 290 11555 Y,-Z,-X REMARK 290 12555 -Y,-Z,X REMARK 290 13555 X+1/2,Y+1/2,Z+1/2 REMARK 290 14555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 15555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 16555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 17555 Z+1/2,X+1/2,Y+1/2 REMARK 290 18555 Z+1/2,-X+1/2,-Y+1/2 REMARK 290 19555 -Z+1/2,-X+1/2,Y+1/2 REMARK 290 20555 -Z+1/2,X+1/2,-Y+1/2 REMARK 290 21555 Y+1/2,Z+1/2,X+1/2 REMARK 290 22555 -Y+1/2,Z+1/2,-X+1/2 REMARK 290 23555 Y+1/2,-Z+1/2,-X+1/2 REMARK 290 24555 -Y+1/2,-Z+1/2,X+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 92.58000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 92.58000 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 92.58000 REMARK 290 SMTRY1 14 -1.000000 0.000000 0.000000 92.58000 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 92.58000 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 92.58000 REMARK 290 SMTRY1 15 -1.000000 0.000000 0.000000 92.58000 REMARK 290 SMTRY2 15 0.000000 1.000000 0.000000 92.58000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 92.58000 REMARK 290 SMTRY1 16 1.000000 0.000000 0.000000 92.58000 REMARK 290 SMTRY2 16 0.000000 -1.000000 0.000000 92.58000 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 92.58000 REMARK 290 SMTRY1 17 0.000000 0.000000 1.000000 92.58000 REMARK 290 SMTRY2 17 1.000000 0.000000 0.000000 92.58000 REMARK 290 SMTRY3 17 0.000000 1.000000 0.000000 92.58000 REMARK 290 SMTRY1 18 0.000000 0.000000 1.000000 92.58000 REMARK 290 SMTRY2 18 -1.000000 0.000000 0.000000 92.58000 REMARK 290 SMTRY3 18 0.000000 -1.000000 0.000000 92.58000 REMARK 290 SMTRY1 19 0.000000 0.000000 -1.000000 92.58000 REMARK 290 SMTRY2 19 -1.000000 0.000000 0.000000 92.58000 REMARK 290 SMTRY3 19 0.000000 1.000000 0.000000 92.58000 REMARK 290 SMTRY1 20 0.000000 0.000000 -1.000000 92.58000 REMARK 290 SMTRY2 20 1.000000 0.000000 0.000000 92.58000 REMARK 290 SMTRY3 20 0.000000 -1.000000 0.000000 92.58000 REMARK 290 SMTRY1 21 0.000000 1.000000 0.000000 92.58000 REMARK 290 SMTRY2 21 0.000000 0.000000 1.000000 92.58000 REMARK 290 SMTRY3 21 1.000000 0.000000 0.000000 92.58000 REMARK 290 SMTRY1 22 0.000000 -1.000000 0.000000 92.58000 REMARK 290 SMTRY2 22 0.000000 0.000000 1.000000 92.58000 REMARK 290 SMTRY3 22 -1.000000 0.000000 0.000000 92.58000 REMARK 290 SMTRY1 23 0.000000 1.000000 0.000000 92.58000 REMARK 290 SMTRY2 23 0.000000 0.000000 -1.000000 92.58000 REMARK 290 SMTRY3 23 -1.000000 0.000000 0.000000 92.58000 REMARK 290 SMTRY1 24 0.000000 -1.000000 0.000000 92.58000 REMARK 290 SMTRY2 24 0.000000 0.000000 -1.000000 92.58000 REMARK 290 SMTRY3 24 1.000000 0.000000 0.000000 92.58000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 100 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 32950 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -8.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 LEU A 3 REMARK 465 PRO A 4 REMARK 465 SER A 5 REMARK 465 ASN A 6 REMARK 465 PRO A 7 REMARK 465 THR A 8 REMARK 465 PRO A 9 REMARK 465 VAL A 10 REMARK 465 ILE A 11 REMARK 465 PRO A 12 REMARK 465 ALA A 13 REMARK 465 ASN A 14 REMARK 465 LEU A 15 REMARK 465 ASP A 16 REMARK 465 ILE A 70 REMARK 465 ASP A 71 REMARK 465 THR A 141 REMARK 465 TYR A 142 REMARK 465 SER A 143 REMARK 465 GLY A 144 REMARK 465 VAL A 145 REMARK 465 ASP A 146 REMARK 465 THR A 147 REMARK 465 ALA A 148 REMARK 465 LEU A 149 REMARK 465 ASP A 150 REMARK 465 GLY A 151 REMARK 465 LEU A 152 REMARK 465 GLN A 153 REMARK 465 GLU A 154 REMARK 465 GLY A 155 REMARK 465 GLN A 156 REMARK 465 GLY A 157 REMARK 465 SER A 268 REMARK 465 ASP A 269 REMARK 465 LEU A 270 REMARK 465 GLN A 271 REMARK 465 ASP A 272 REMARK 465 ALA A 753 REMARK 465 SER A 754 REMARK 465 SER A 755 REMARK 465 SER A 756 REMARK 465 VAL A 757 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 72 CG CD CE NZ REMARK 470 THR A 140 OG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O VAL A 568 O PHE A 589 2.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 68 56.73 -69.45 REMARK 500 LYS A 108 64.33 -119.39 REMARK 500 ASN A 266 121.36 135.04 REMARK 500 SER A 397 -51.27 -28.34 REMARK 500 SER A 398 43.57 -144.58 REMARK 500 ASN A 417 91.09 -171.18 REMARK 500 PRO A 418 -91.41 2.74 REMARK 500 ASP A 467 75.92 -110.10 REMARK 500 PRO A 517 65.07 -57.48 REMARK 500 ASN A 518 -66.65 -178.19 REMARK 500 ASN A 578 123.03 -37.76 REMARK 500 ASN A 624 125.87 -37.95 REMARK 500 THR A 679 -124.64 51.89 REMARK 500 ALA A 707 -157.44 -121.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 801 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 VAL A 189 O REMARK 620 2 GLU A 192 O 85.3 REMARK 620 3 ASP A 195 OD1 92.9 104.1 REMARK 620 4 HOH A 934 O 156.9 84.6 69.6 REMARK 620 5 HOH A 955 O 113.1 84.8 153.3 86.6 REMARK 620 6 HOH A 963 O 95.7 165.4 90.4 99.2 81.4 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 801 DBREF 5M41 A 1 757 UNP F0V195 F0V195_9VIBR 1 757 SEQRES 1 A 757 MET SER LEU PRO SER ASN PRO THR PRO VAL ILE PRO ALA SEQRES 2 A 757 ASN LEU ASP LEU GLY GLY ILE ASN HIS SER ALA VAL ALA SEQRES 3 A 757 ASN ARG TYR ARG ASN LEU THR LYS GLU ALA GLN GLN ASN SEQRES 4 A 757 LEU TYR GLN PHE ALA ILE ILE GLU VAL LEU SER GLN ILE SEQRES 5 A 757 ARG GLU GLU ARG PRO ASP LYS ASN LEU ASP ALA TYR ASN SEQRES 6 A 757 ALA LEU ILE GLY ILE ASP LYS VAL THR THR VAL ASP ILE SEQRES 7 A 757 TYR THR TYR GLY ALA THR ASN MET PHE PHE MET PRO ASP SEQRES 8 A 757 ALA ARG GLY SER LYS THR GLY ILE LEU VAL ASN LEU ASN SEQRES 9 A 757 SER PRO ASP LYS PRO TYR THR ASN ILE GLN GLN PRO SER SEQRES 10 A 757 ASP PHE ASN ASN ILE ASN ASP GLU SER PHE ARG GLN ASN SEQRES 11 A 757 PHE THR SER TRP GLU LYS ARG ASP GLY THR THR TYR SER SEQRES 12 A 757 GLY VAL ASP THR ALA LEU ASP GLY LEU GLN GLU GLY GLN SEQRES 13 A 757 GLY GLY TRP ASN LEU GLY TYR PHE ASN GLN LYS THR PRO SEQRES 14 A 757 ARG THR ILE ASN ILE SER GLU LEU SER LYS ILE LEU VAL SEQRES 15 A 757 GLU ARG LEU ASP TYR HIS VAL SER GLN GLU ASN ASN ASP SEQRES 16 A 757 ASP GLN ILE LEU SER THR LEU LEU LEU ASP VAL LEU PRO SEQRES 17 A 757 ARG SER ALA LYS GLY ALA ALA ARG GLU PRO LEU GLY VAL SEQRES 18 A 757 SER ALA SER GLY ILE PRO PHE GLN LEU GLU PHE THR PHE SEQRES 19 A 757 GLU GLY PHE THR SER PRO THR ASP GLU LEU ARG ALA ILE SEQRES 20 A 757 GLN SER PRO PHE SER HIS LEU ALA LYS TYR PHE ASP LEU SEQRES 21 A 757 LEU VAL ALA SER THR ASN GLY SER ASP LEU GLN ASP VAL SEQRES 22 A 757 GLU TYR SER GLN GLU GLN ALA GLU ASN ILE GLY ALA TRP SEQRES 23 A 757 ILE ASP SER GLY THR GLN LEU LEU MET SER ALA SER GLY SEQRES 24 A 757 ILE GLY ALA ALA VAL SER VAL ILE GLN GLY ALA ALA GLY SEQRES 25 A 757 LEU THR ALA ASP ALA ILE GLU GLY LYS GLU ILE ASP PRO SEQRES 26 A 757 LEU ASP VAL ILE SER LEU SER LEU ALA ALA ILE PRO GLY SEQRES 27 A 757 GLY LYS ILE VAL ALA LYS LEU SER LYS VAL SER LYS ASN SEQRES 28 A 757 LEU GLY GLN VAL VAL ARG GLY GLY ILE SER ILE ALA GLU SEQRES 29 A 757 THR GLY VAL ASP ILE VAL GLY SER SER ARG ASP LEU ILE SEQRES 30 A 757 GLU GLY PHE LYS LYS GLY ASN PHE THR ASP ILE ILE ASN SEQRES 31 A 757 GLY LEU VAL SER VAL ALA SER SER SER ALA SER GLY ARG SEQRES 32 A 757 PRO GLY LYS SER LYS ILE GLY ASN ALA ILE LYS LYS GLY SEQRES 33 A 757 ASN PRO ASP ALA PRO LEU PRO THR ARG PRO THR TYR ARG SEQRES 34 A 757 ASN HIS GLU GLY GLU VAL ARG PRO ILE PRO THR ALA GLN SEQRES 35 A 757 THR LYS SER PHE PHE GLU ARG VAL ALA ILE VAL ARG ARG SEQRES 36 A 757 GLU GLY LEU SER GLY ARG GLY ALA ILE GLY LEU ASP LEU SEQRES 37 A 757 THR ALA ALA GLN LYS ARG GLY ALA GLU LEU SER GLY MET SEQRES 38 A 757 GLY GLY THR ILE SER LYS SER ASN PRO ASN GLY ASN VAL SEQRES 39 A 757 SER GLN VAL TYR ILE ASN GLU ALA GLU GLY ILE GLU LYS SEQRES 40 A 757 ASN ILE THR TYR ARG LYS VAL PRO VAL PRO ASN GLU PRO SEQRES 41 A 757 GLY ASN PHE GLU ASN ARG LEU GLN GLU SER PHE LEU ASP SEQRES 42 A 757 ASN ASN GLY GLN THR LYS TRP ARG ASP PHE PRO TYR ALA SEQRES 43 A 757 GLY GLU GLU PHE ASP PHE ARG LEU GLN HIS LYS ASP ASP SEQRES 44 A 757 PHE ASN ASN ILE GLY ASP LEU GLY VAL GLY LYS GLN GLY SEQRES 45 A 757 ILE ILE ALA VAL ASN ASN PRO TYR SER PHE VAL HIS HIS SEQRES 46 A 757 SER HIS THR PHE GLU GLN LYS GLY ILE SER ASN ASN HIS SEQRES 47 A 757 LEU THR LEU GLU SER ASN ALA PHE LEU THR TYR ILE GLU SEQRES 48 A 757 GLY LYS LYS THR GLY ASP PHE GLU ASN LYS TYR GLY ASN SEQRES 49 A 757 GLU MET GLU TRP LEU VAL ARG LYS PHE LYS THR LYS LYS SEQRES 50 A 757 ASN ASP PHE ASP LEU LYS ASP ILE PRO ASP ASN ILE HIS SEQRES 51 A 757 PHE ARG THR ASP ARG GLU LYS GLY ASP HIS SER LEU THR SEQRES 52 A 757 THR TYR THR LEU GLN ASP PHE ILE THR VAL VAL GLU ASN SEQRES 53 A 757 ALA PRO THR LYS MET ARG LYS VAL LYS ASN ASP GLU PHE SEQRES 54 A 757 ALA LEU ASN ASN ILE VAL GLU SER MET ARG ALA THR ALA SEQRES 55 A 757 LYS ASN MET GLY ALA SER PRO ASP THR LEU PHE LEU ASP SEQRES 56 A 757 VAL ALA SER THR ASN TYR MET THR GLN LEU MET GLY GLN SEQRES 57 A 757 VAL LEU THR ASN GLY ARG GLN GLU LEU ASN LEU GLN GLY SEQRES 58 A 757 LEU SER ASN ALA ALA GLN LYS LEU ARG ASN GLY ALA SER SEQRES 59 A 757 SER SER VAL HET MG A 801 1 HETNAM MG MAGNESIUM ION FORMUL 2 MG MG 2+ FORMUL 3 HOH *227(H2 O) HELIX 1 AA1 ASN A 21 ASN A 31 1 11 HELIX 2 AA2 THR A 33 GLU A 55 1 23 HELIX 3 AA3 LEU A 61 ILE A 68 1 8 HELIX 4 AA4 PRO A 116 ASN A 121 1 6 HELIX 5 AA5 ASP A 124 GLN A 129 1 6 HELIX 6 AA6 THR A 132 ARG A 137 1 6 HELIX 7 AA7 ASP A 138 THR A 140 5 3 HELIX 8 AA8 ASN A 160 GLN A 166 5 7 HELIX 9 AA9 GLU A 176 GLU A 192 1 17 HELIX 10 AB1 ASN A 194 LEU A 204 1 11 HELIX 11 AB2 ASP A 205 ARG A 216 1 12 HELIX 12 AB3 SER A 239 ALA A 246 1 8 HELIX 13 AB4 SER A 252 THR A 265 1 14 HELIX 14 AB5 SER A 276 GLY A 284 1 9 HELIX 15 AB6 GLY A 301 GLY A 320 1 20 HELIX 16 AB7 LYS A 350 GLY A 353 5 4 HELIX 17 AB8 SER A 373 GLY A 383 1 11 HELIX 18 AB9 PHE A 385 SER A 397 1 13 HELIX 19 AC1 GLY A 405 GLY A 416 1 12 HELIX 20 AC2 THR A 443 LEU A 458 1 16 HELIX 21 AC3 THR A 469 ARG A 474 1 6 HELIX 22 AC4 TYR A 545 HIS A 556 1 12 HELIX 23 AC5 GLU A 602 THR A 615 1 14 HELIX 24 AC6 ASP A 617 TYR A 622 1 6 HELIX 25 AC7 ASN A 624 PHE A 633 1 10 HELIX 26 AC8 LYS A 634 THR A 635 5 2 HELIX 27 AC9 LYS A 636 PHE A 640 5 5 HELIX 28 AD1 LEU A 667 ALA A 677 1 11 HELIX 29 AD2 PRO A 678 ASN A 686 5 9 HELIX 30 AD3 ASP A 687 MET A 705 1 19 HELIX 31 AD4 SER A 718 ASN A 732 1 15 HELIX 32 AD5 ASN A 738 GLY A 752 1 15 SHEET 1 AA1 5 TYR A 110 ILE A 113 0 SHEET 2 AA1 5 GLY A 98 ASN A 102 -1 N GLY A 98 O ILE A 113 SHEET 3 AA1 5 MET A 86 PRO A 90 -1 N MET A 89 O ILE A 99 SHEET 4 AA1 5 ASP A 77 THR A 80 -1 N TYR A 79 O PHE A 88 SHEET 5 AA1 5 ARG A 170 ASN A 173 -1 O ILE A 172 N ILE A 78 SHEET 1 AA2 2 VAL A 221 ALA A 223 0 SHEET 2 AA2 2 ILE A 226 LEU A 230 -1 O LEU A 230 N VAL A 221 SHEET 1 AA3 3 TRP A 286 ASP A 288 0 SHEET 2 AA3 3 LYS A 340 VAL A 348 -1 O LYS A 347 N ILE A 287 SHEET 3 AA3 3 LEU A 293 SER A 296 -1 N LEU A 293 O ALA A 343 SHEET 1 AA4 5 TRP A 286 ASP A 288 0 SHEET 2 AA4 5 LYS A 340 VAL A 348 -1 O LYS A 347 N ILE A 287 SHEET 3 AA4 5 VAL A 328 ILE A 336 -1 N ALA A 334 O VAL A 342 SHEET 4 AA4 5 GLY A 366 SER A 372 -1 O VAL A 367 N LEU A 333 SHEET 5 AA4 5 GLY A 359 ALA A 363 -1 N ALA A 363 O GLY A 366 SHEET 1 AA5 3 GLN A 354 ARG A 357 0 SHEET 2 AA5 3 THR A 427 ARG A 429 -1 O ARG A 429 N GLN A 354 SHEET 3 AA5 3 VAL A 435 PRO A 437 -1 O ARG A 436 N TYR A 428 SHEET 1 AA6 4 GLN A 496 ASN A 500 0 SHEET 2 AA6 4 ILE A 505 PRO A 515 -1 O LYS A 507 N TYR A 498 SHEET 3 AA6 4 PHE A 523 LEU A 532 -1 O ARG A 526 N ARG A 512 SHEET 4 AA6 4 THR A 538 ASP A 542 -1 O LYS A 539 N PHE A 531 SHEET 1 AA7 7 PHE A 560 ASN A 562 0 SHEET 2 AA7 7 GLN A 571 VAL A 576 -1 O ALA A 575 N ASN A 561 SHEET 3 AA7 7 VAL A 583 PHE A 589 -1 O HIS A 585 N ILE A 574 SHEET 4 AA7 7 ILE A 594 LEU A 601 -1 O THR A 600 N HIS A 584 SHEET 5 AA7 7 ILE A 649 ARG A 652 -1 O ILE A 649 N LEU A 601 SHEET 6 AA7 7 PHE A 713 ASP A 715 -1 O PHE A 713 N ARG A 652 SHEET 7 AA7 7 LEU A 662 THR A 666 -1 N THR A 663 O LEU A 714 LINK O VAL A 189 MG MG A 801 1555 1555 2.47 LINK O GLU A 192 MG MG A 801 1555 1555 2.23 LINK OD1 ASP A 195 MG MG A 801 1555 1555 2.06 LINK MG MG A 801 O HOH A 934 1555 1555 2.49 LINK MG MG A 801 O HOH A 955 1555 1555 2.35 LINK MG MG A 801 O HOH A 963 1555 1555 2.49 CISPEP 1 ASN A 266 GLY A 267 0 -0.84 SITE 1 AC1 6 VAL A 189 GLU A 192 ASP A 195 HOH A 934 SITE 2 AC1 6 HOH A 955 HOH A 963 CRYST1 185.160 185.160 185.160 90.00 90.00 90.00 I 2 3 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005401 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005401 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005401 0.00000