HEADER HYDROLASE 18-OCT-16 5M4J TITLE CRYSTAL STRUCTURE OF WILD-TYPE HUMAN PROLIDASE WITH GLYPRO LIGAND COMPND MOL_ID: 1; COMPND 2 MOLECULE: XAA-PRO DIPEPTIDASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: X-PRO DIPEPTIDASE,IMIDODIPEPTIDASE,PEPTIDASE D,PROLINE COMPND 5 DIPEPTIDASE,PROLIDASE; COMPND 6 EC: 3.4.13.9; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PEPD, PRD; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: ROSETTA; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS PROLIDASE, PEPTIDASE, HYDROLYSIS, PITA-BREAD, METALLOENZYME, KEYWDS 2 HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR P.WILK,M.S.WEISS,U.MUELLER,H.DOBBEK REVDAT 6 17-JAN-24 5M4J 1 REMARK REVDAT 5 02-JUN-21 5M4J 1 LINK REVDAT 4 22-APR-20 5M4J 1 REMARK REVDAT 3 20-SEP-17 5M4J 1 JRNL REVDAT 2 19-JUL-17 5M4J 1 REVDAT 1 12-JUL-17 5M4J 0 JRNL AUTH P.WILK,M.UEHLEIN,J.KALMS,H.DOBBEK,U.MUELLER,M.S.WEISS JRNL TITL SUBSTRATE SPECIFICITY AND REACTION MECHANISM OF HUMAN JRNL TITL 2 PROLIDASE. JRNL REF FEBS J. V. 284 2870 2017 JRNL REFN ISSN 1742-4658 JRNL PMID 28677335 JRNL DOI 10.1111/FEBS.14158 REMARK 2 REMARK 2 RESOLUTION. 1.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.94 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 173235 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.151 REMARK 3 R VALUE (WORKING SET) : 0.151 REMARK 3 FREE R VALUE : 0.168 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 1.210 REMARK 3 FREE R VALUE TEST SET COUNT : 2101 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.9652 - 3.8190 1.00 11837 146 0.1316 0.1406 REMARK 3 2 3.8190 - 3.0314 1.00 11592 142 0.1288 0.1341 REMARK 3 3 3.0314 - 2.6482 1.00 11474 141 0.1430 0.1725 REMARK 3 4 2.6482 - 2.4061 1.00 11449 140 0.1342 0.1383 REMARK 3 5 2.4061 - 2.2336 1.00 11455 141 0.1312 0.1482 REMARK 3 6 2.2336 - 2.1020 1.00 11405 140 0.1338 0.1490 REMARK 3 7 2.1020 - 1.9967 1.00 11391 140 0.1445 0.1892 REMARK 3 8 1.9967 - 1.9098 1.00 11348 139 0.1574 0.2113 REMARK 3 9 1.9098 - 1.8362 1.00 11422 140 0.1748 0.1897 REMARK 3 10 1.8362 - 1.7729 1.00 11335 139 0.1980 0.2468 REMARK 3 11 1.7729 - 1.7174 1.00 11381 140 0.2118 0.2600 REMARK 3 12 1.7174 - 1.6683 1.00 11334 139 0.2267 0.2612 REMARK 3 13 1.6683 - 1.6244 1.00 11322 139 0.2427 0.2611 REMARK 3 14 1.6244 - 1.5848 1.00 11313 138 0.2810 0.2723 REMARK 3 15 1.5848 - 1.5488 0.98 11076 137 0.3230 0.3131 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.150 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.120 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 19.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.24 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 7964 REMARK 3 ANGLE : 1.062 10792 REMARK 3 CHIRALITY : 0.041 1167 REMARK 3 PLANARITY : 0.005 1416 REMARK 3 DIHEDRAL : 13.346 2959 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 18 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 6 THROUGH 124 ) REMARK 3 ORIGIN FOR THE GROUP (A): 39.9249 25.0195 69.9225 REMARK 3 T TENSOR REMARK 3 T11: 0.1547 T22: 0.1765 REMARK 3 T33: 0.2317 T12: -0.0012 REMARK 3 T13: 0.0270 T23: -0.0116 REMARK 3 L TENSOR REMARK 3 L11: 0.4838 L22: 0.7768 REMARK 3 L33: 0.4626 L12: 0.0238 REMARK 3 L13: 0.0561 L23: 0.2229 REMARK 3 S TENSOR REMARK 3 S11: 0.0099 S12: 0.0508 S13: -0.0836 REMARK 3 S21: -0.0716 S22: 0.0554 S23: -0.2881 REMARK 3 S31: 0.0253 S32: 0.0181 S33: 0.0074 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 125 THROUGH 159 ) REMARK 3 ORIGIN FOR THE GROUP (A): 47.1137 28.8658 79.0375 REMARK 3 T TENSOR REMARK 3 T11: 0.1490 T22: 0.2125 REMARK 3 T33: 0.3854 T12: 0.0221 REMARK 3 T13: -0.0298 T23: -0.0498 REMARK 3 L TENSOR REMARK 3 L11: 0.1404 L22: 0.1862 REMARK 3 L33: 0.2160 L12: -0.0886 REMARK 3 L13: 0.0467 L23: -0.3108 REMARK 3 S TENSOR REMARK 3 S11: -0.0193 S12: -0.0907 S13: 0.0354 REMARK 3 S21: 0.0660 S22: 0.0552 S23: -0.3232 REMARK 3 S31: 0.0076 S32: 0.0205 S33: 0.0042 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 160 THROUGH 277 ) REMARK 3 ORIGIN FOR THE GROUP (A): 20.1421 34.3572 73.1473 REMARK 3 T TENSOR REMARK 3 T11: 0.1586 T22: 0.1954 REMARK 3 T33: 0.1361 T12: 0.0090 REMARK 3 T13: -0.0167 T23: 0.0088 REMARK 3 L TENSOR REMARK 3 L11: 0.5045 L22: 1.0268 REMARK 3 L33: -0.0645 L12: -0.2690 REMARK 3 L13: -0.0394 L23: 0.1056 REMARK 3 S TENSOR REMARK 3 S11: -0.0313 S12: -0.0216 S13: 0.0477 REMARK 3 S21: -0.0471 S22: 0.0188 S23: 0.0614 REMARK 3 S31: -0.0187 S32: -0.0155 S33: -0.0008 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 278 THROUGH 434 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.3199 52.9377 76.3037 REMARK 3 T TENSOR REMARK 3 T11: 0.1692 T22: 0.1668 REMARK 3 T33: 0.2010 T12: 0.0199 REMARK 3 T13: -0.0121 T23: 0.0072 REMARK 3 L TENSOR REMARK 3 L11: 0.7912 L22: 1.4550 REMARK 3 L33: 0.1573 L12: -0.3801 REMARK 3 L13: -0.1204 L23: 0.1983 REMARK 3 S TENSOR REMARK 3 S11: -0.0097 S12: -0.0344 S13: 0.2259 REMARK 3 S21: -0.0089 S22: 0.0265 S23: -0.0237 REMARK 3 S31: -0.0490 S32: 0.0153 S33: -0.0000 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 435 THROUGH 464 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.4262 51.8019 74.3082 REMARK 3 T TENSOR REMARK 3 T11: 0.1721 T22: 0.1825 REMARK 3 T33: 0.2689 T12: 0.0193 REMARK 3 T13: 0.0171 T23: 0.0223 REMARK 3 L TENSOR REMARK 3 L11: 0.1022 L22: 0.5290 REMARK 3 L33: 0.1173 L12: 0.0366 REMARK 3 L13: 0.1490 L23: 0.0626 REMARK 3 S TENSOR REMARK 3 S11: 0.0467 S12: 0.1246 S13: 0.2711 REMARK 3 S21: -0.0883 S22: -0.0382 S23: 0.1967 REMARK 3 S31: -0.0509 S32: -0.0916 S33: 0.0065 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 465 THROUGH 489 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.5102 43.8444 59.4716 REMARK 3 T TENSOR REMARK 3 T11: 0.3136 T22: 0.3043 REMARK 3 T33: 0.2572 T12: 0.0396 REMARK 3 T13: -0.1261 T23: 0.0211 REMARK 3 L TENSOR REMARK 3 L11: 0.1815 L22: 0.0584 REMARK 3 L33: 0.0918 L12: -0.0476 REMARK 3 L13: 0.0244 L23: 0.0627 REMARK 3 S TENSOR REMARK 3 S11: -0.0004 S12: 0.4416 S13: -0.0978 REMARK 3 S21: -0.4993 S22: -0.0631 S23: 0.3203 REMARK 3 S31: -0.1438 S32: -0.0102 S33: 0.1029 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 6 THROUGH 36 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.4319 14.7983 97.1924 REMARK 3 T TENSOR REMARK 3 T11: 0.3551 T22: 0.2193 REMARK 3 T33: 0.1673 T12: 0.0108 REMARK 3 T13: 0.1553 T23: 0.0454 REMARK 3 L TENSOR REMARK 3 L11: 0.2089 L22: 0.3756 REMARK 3 L33: 0.3381 L12: 0.2850 REMARK 3 L13: 0.0037 L23: 0.1497 REMARK 3 S TENSOR REMARK 3 S11: 0.0193 S12: -0.0552 S13: -0.1369 REMARK 3 S21: 0.3912 S22: 0.0286 S23: 0.6041 REMARK 3 S31: -0.0105 S32: -0.2059 S33: -0.2409 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 37 THROUGH 82 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.7580 22.4845 95.5550 REMARK 3 T TENSOR REMARK 3 T11: 0.2866 T22: 0.1898 REMARK 3 T33: 0.1237 T12: 0.0053 REMARK 3 T13: -0.0066 T23: 0.0007 REMARK 3 L TENSOR REMARK 3 L11: 0.4523 L22: 0.3612 REMARK 3 L33: 0.0639 L12: -0.1138 REMARK 3 L13: -0.2075 L23: 0.0495 REMARK 3 S TENSOR REMARK 3 S11: -0.0323 S12: 0.0845 S13: 0.0921 REMARK 3 S21: 0.2428 S22: 0.0778 S23: -0.0321 REMARK 3 S31: -0.0498 S32: -0.0348 S33: 0.0383 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 83 THROUGH 124 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.6401 30.7299 100.5542 REMARK 3 T TENSOR REMARK 3 T11: 0.4275 T22: 0.2431 REMARK 3 T33: 0.1838 T12: 0.0412 REMARK 3 T13: 0.0886 T23: 0.0132 REMARK 3 L TENSOR REMARK 3 L11: 0.5551 L22: 0.2118 REMARK 3 L33: 0.4496 L12: -0.1715 REMARK 3 L13: 0.2150 L23: 0.1853 REMARK 3 S TENSOR REMARK 3 S11: -0.0658 S12: 0.0295 S13: 0.2646 REMARK 3 S21: 0.4912 S22: 0.0766 S23: 0.1794 REMARK 3 S31: -0.2613 S32: -0.0654 S33: -0.2856 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 125 THROUGH 159 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.6828 21.3030 105.6702 REMARK 3 T TENSOR REMARK 3 T11: 0.5368 T22: 0.2264 REMARK 3 T33: 0.0445 T12: 0.0077 REMARK 3 T13: -0.0629 T23: -0.0292 REMARK 3 L TENSOR REMARK 3 L11: 0.1349 L22: 0.2149 REMARK 3 L33: 0.0875 L12: 0.1634 REMARK 3 L13: 0.0807 L23: -0.0217 REMARK 3 S TENSOR REMARK 3 S11: 0.0633 S12: -0.0508 S13: -0.0158 REMARK 3 S21: 0.3754 S22: -0.0276 S23: -0.3251 REMARK 3 S31: -0.2150 S32: 0.0916 S33: -0.0272 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 160 THROUGH 212 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.4482 12.3328 92.5458 REMARK 3 T TENSOR REMARK 3 T11: 0.2444 T22: 0.1647 REMARK 3 T33: 0.1127 T12: 0.0075 REMARK 3 T13: 0.0254 T23: 0.0147 REMARK 3 L TENSOR REMARK 3 L11: 0.1591 L22: 0.9485 REMARK 3 L33: 0.4913 L12: -0.2214 REMARK 3 L13: -0.1536 L23: -0.1217 REMARK 3 S TENSOR REMARK 3 S11: -0.0329 S12: -0.0274 S13: -0.0784 REMARK 3 S21: 0.3106 S22: 0.0185 S23: 0.1292 REMARK 3 S31: 0.0323 S32: -0.0869 S33: -0.1800 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 213 THROUGH 277 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.1052 13.0616 67.3480 REMARK 3 T TENSOR REMARK 3 T11: 0.1796 T22: 0.1971 REMARK 3 T33: 0.1725 T12: 0.0096 REMARK 3 T13: -0.0142 T23: -0.0175 REMARK 3 L TENSOR REMARK 3 L11: 0.0723 L22: 0.4404 REMARK 3 L33: 0.0102 L12: 0.0193 REMARK 3 L13: 0.0257 L23: 0.0628 REMARK 3 S TENSOR REMARK 3 S11: 0.0318 S12: -0.0015 S13: -0.0873 REMARK 3 S21: -0.0486 S22: 0.0068 S23: -0.0102 REMARK 3 S31: 0.0040 S32: 0.0124 S33: -0.0000 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 278 THROUGH 319 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.8662 0.1751 70.6594 REMARK 3 T TENSOR REMARK 3 T11: 0.1650 T22: 0.1835 REMARK 3 T33: 0.1829 T12: -0.0107 REMARK 3 T13: -0.0091 T23: -0.0306 REMARK 3 L TENSOR REMARK 3 L11: 0.2389 L22: 0.3645 REMARK 3 L33: 0.0770 L12: -0.2242 REMARK 3 L13: 0.1114 L23: -0.0064 REMARK 3 S TENSOR REMARK 3 S11: 0.0286 S12: 0.0599 S13: -0.1238 REMARK 3 S21: 0.0004 S22: -0.0623 S23: 0.1756 REMARK 3 S31: 0.0007 S32: -0.0810 S33: -0.0010 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 320 THROUGH 407 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.6336 -7.8477 82.1473 REMARK 3 T TENSOR REMARK 3 T11: 0.2243 T22: 0.1801 REMARK 3 T33: 0.2061 T12: -0.0004 REMARK 3 T13: -0.0174 T23: 0.0014 REMARK 3 L TENSOR REMARK 3 L11: 0.2922 L22: 0.4344 REMARK 3 L33: 0.4251 L12: -0.1836 REMARK 3 L13: -0.1016 L23: -0.0174 REMARK 3 S TENSOR REMARK 3 S11: -0.0345 S12: -0.0177 S13: -0.1696 REMARK 3 S21: 0.2196 S22: 0.0513 S23: -0.0102 REMARK 3 S31: 0.1424 S32: 0.0412 S33: -0.0000 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 408 THROUGH 443 ) REMARK 3 ORIGIN FOR THE GROUP (A): 30.2103 -8.7171 67.7404 REMARK 3 T TENSOR REMARK 3 T11: 0.1303 T22: 0.2049 REMARK 3 T33: 0.2418 T12: 0.0090 REMARK 3 T13: -0.0121 T23: -0.0393 REMARK 3 L TENSOR REMARK 3 L11: 0.2216 L22: 0.4139 REMARK 3 L33: 0.5332 L12: 0.0955 REMARK 3 L13: -0.0424 L23: -0.1267 REMARK 3 S TENSOR REMARK 3 S11: 0.1025 S12: 0.0372 S13: -0.1383 REMARK 3 S21: 0.0209 S22: -0.0409 S23: -0.1869 REMARK 3 S31: -0.0368 S32: 0.0811 S33: 0.0424 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 444 THROUGH 489 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.3033 2.8600 70.3645 REMARK 3 T TENSOR REMARK 3 T11: 0.1457 T22: 0.2058 REMARK 3 T33: 0.2109 T12: -0.0064 REMARK 3 T13: -0.0225 T23: -0.0263 REMARK 3 L TENSOR REMARK 3 L11: 0.3524 L22: 0.6565 REMARK 3 L33: 0.1641 L12: 0.0085 REMARK 3 L13: 0.0135 L23: 0.1608 REMARK 3 S TENSOR REMARK 3 S11: -0.0157 S12: 0.1279 S13: -0.1229 REMARK 3 S21: -0.0194 S22: -0.1022 S23: 0.2663 REMARK 3 S31: -0.0269 S32: -0.0595 S33: -0.0097 REMARK 3 TLS GROUP : 17 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 1 THROUGH 2 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.3957 4.5138 78.4384 REMARK 3 T TENSOR REMARK 3 T11: 0.3082 T22: 0.3880 REMARK 3 T33: 0.3165 T12: 0.0371 REMARK 3 T13: -0.0860 T23: -0.0491 REMARK 3 L TENSOR REMARK 3 L11: 0.6773 L22: 1.6017 REMARK 3 L33: 0.0708 L12: -1.0274 REMARK 3 L13: 0.2167 L23: -0.3313 REMARK 3 S TENSOR REMARK 3 S11: 0.0159 S12: 0.0357 S13: 0.0203 REMARK 3 S21: -0.0028 S22: 0.0338 S23: 0.0306 REMARK 3 S31: 0.0259 S32: 0.0310 S33: 0.0031 REMARK 3 TLS GROUP : 18 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 1 THROUGH 2 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.1702 42.9820 78.3925 REMARK 3 T TENSOR REMARK 3 T11: 0.2612 T22: 0.3197 REMARK 3 T33: 0.3899 T12: 0.0105 REMARK 3 T13: -0.0199 T23: 0.0027 REMARK 3 L TENSOR REMARK 3 L11: 0.0545 L22: 2.8522 REMARK 3 L33: 0.8235 L12: 0.3919 REMARK 3 L13: 0.1962 L23: 1.4814 REMARK 3 S TENSOR REMARK 3 S11: -0.0108 S12: -0.0211 S13: -0.0151 REMARK 3 S21: -0.0403 S22: 0.0241 S23: 0.0080 REMARK 3 S31: 0.0741 S32: -0.0424 S33: -0.0102 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: CHAIN A REMARK 3 SELECTION : CHAIN B REMARK 3 ATOM PAIRS NUMBER : 5503 REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5M4J COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 19-OCT-16. REMARK 100 THE DEPOSITION ID IS D_1200001917. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-JUN-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.6-8.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.918 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL MONOCHROMATOR SI REMARK 200 -11 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE, XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : NULL REMARK 200 RESOLUTION RANGE HIGH (A) : NULL REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.64 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 1.26400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.620 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: 2OKN REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.70 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.78 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10MM NABORATE, 690-760MM NACITRATE, REMARK 280 VAPOR DIFFUSION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 108.26200 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 108.26200 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 51.77700 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 53.47100 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 51.77700 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 53.47100 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 108.26200 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 51.77700 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 53.47100 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 108.26200 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 51.77700 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 53.47100 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7530 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 35080 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -42.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 646 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 C GLY B 503 N PRO B 504 1.32 REMARK 500 C GLY A 503 N PRO A 504 1.34 REMARK 500 OE1 GLU B 131 O HOH B 601 2.10 REMARK 500 OE1 GLN B 268 O HOH B 602 2.18 REMARK 500 O LEU B 435 O HOH B 603 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 314 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 13 -124.61 50.06 REMARK 500 TYR A 57 -129.62 50.14 REMARK 500 CYS A 245 75.86 -117.94 REMARK 500 ARG A 470 -35.87 -130.30 REMARK 500 LYS A 484 49.69 38.60 REMARK 500 ALA A 485 31.31 -79.83 REMARK 500 ASN B 13 -124.56 49.74 REMARK 500 TYR B 57 -128.93 50.01 REMARK 500 CYS B 245 74.92 -118.53 REMARK 500 ARG B 470 -36.18 -130.71 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 GLY A 503 REMARK 610 GLY B 503 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 500 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 276 OD2 REMARK 620 2 GLU A 412 OE1 122.5 REMARK 620 3 GLU A 452 OE1 89.1 91.1 REMARK 620 4 GLU A 452 OE2 130.0 80.3 43.2 REMARK 620 5 GLY A 503 O 113.0 101.2 141.8 103.1 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 499 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 287 OD2 REMARK 620 2 GLU A 412 OE2 165.2 REMARK 620 3 GLU A 452 OE2 84.6 80.5 REMARK 620 4 GLY A 503 O 89.8 104.5 162.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 500 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 276 OD2 REMARK 620 2 GLU B 412 OE1 124.9 REMARK 620 3 GLU B 452 OE1 91.2 91.1 REMARK 620 4 GLY B 503 O 114.5 98.5 138.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 499 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 287 OD2 REMARK 620 2 GLU B 412 OE2 161.0 REMARK 620 3 GLU B 452 OE2 84.2 77.0 REMARK 620 4 GLY B 503 O 91.6 107.1 160.1 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 499 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GLY A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PRO A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA B 499 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA B 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GLY B 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PRO B 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 506 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 507 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 508 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5M4G RELATED DB: PDB REMARK 900 CONTAINS THE SAME PROTEIN IN "APO" FORM. REMARK 900 RELATED ID: 5M4L RELATED DB: PDB REMARK 900 CONTAINS THE SAME PROTEIN IN COMPLEX WITH DIFFERENT SUBSTRATE. REMARK 900 RELATED ID: 5M4Q RELATED DB: PDB REMARK 900 CONTAINS THE SAME PROTEIN IN COMPLEX WITH PRODUCT. DBREF 5M4J A 6 489 UNP P12955 PEPD_HUMAN 6 489 DBREF 5M4J B 6 489 UNP P12955 PEPD_HUMAN 6 489 SEQRES 1 A 484 GLY PRO SER PHE TRP LEU GLY ASN GLU THR LEU LYS VAL SEQRES 2 A 484 PRO LEU ALA LEU PHE ALA LEU ASN ARG GLN ARG LEU CYS SEQRES 3 A 484 GLU ARG LEU ARG LYS ASN PRO ALA VAL GLN ALA GLY SER SEQRES 4 A 484 ILE VAL VAL LEU GLN GLY GLY GLU GLU THR GLN ARG TYR SEQRES 5 A 484 CYS THR ASP THR GLY VAL LEU PHE ARG GLN GLU SER PHE SEQRES 6 A 484 PHE HIS TRP ALA PHE GLY VAL THR GLU PRO GLY CYS TYR SEQRES 7 A 484 GLY VAL ILE ASP VAL ASP THR GLY LYS SER THR LEU PHE SEQRES 8 A 484 VAL PRO ARG LEU PRO ALA SER HIS ALA THR TRP MET GLY SEQRES 9 A 484 LYS ILE HIS SER LYS GLU HIS PHE LYS GLU LYS TYR ALA SEQRES 10 A 484 VAL ASP ASP VAL GLN TYR VAL ASP GLU ILE ALA SER VAL SEQRES 11 A 484 LEU THR SER GLN LYS PRO SER VAL LEU LEU THR LEU ARG SEQRES 12 A 484 GLY VAL ASN THR ASP SER GLY SER VAL CYS ARG GLU ALA SEQRES 13 A 484 SER PHE ASP GLY ILE SER LYS PHE GLU VAL ASN ASN THR SEQRES 14 A 484 ILE LEU HIS PRO GLU ILE VAL GLU CYS ARG VAL PHE LYS SEQRES 15 A 484 THR ASP MET GLU LEU GLU VAL LEU ARG TYR THR ASN LYS SEQRES 16 A 484 ILE SER SER GLU ALA HIS ARG GLU VAL MET LYS ALA VAL SEQRES 17 A 484 LYS VAL GLY MET LYS GLU TYR GLU LEU GLU SER LEU PHE SEQRES 18 A 484 GLU HIS TYR CYS TYR SER ARG GLY GLY MET ARG HIS SER SEQRES 19 A 484 SER TYR THR CYS ILE CYS GLY SER GLY GLU ASN SER ALA SEQRES 20 A 484 VAL LEU HIS TYR GLY HIS ALA GLY ALA PRO ASN ASP ARG SEQRES 21 A 484 THR ILE GLN ASN GLY ASP MET CYS LEU PHE ASP MET GLY SEQRES 22 A 484 GLY GLU TYR TYR CYS PHE ALA SER ASP ILE THR CYS SER SEQRES 23 A 484 PHE PRO ALA ASN GLY LYS PHE THR ALA ASP GLN LYS ALA SEQRES 24 A 484 VAL TYR GLU ALA VAL LEU ARG SER SER ARG ALA VAL MET SEQRES 25 A 484 GLY ALA MET LYS PRO GLY VAL TRP TRP PRO ASP MET HIS SEQRES 26 A 484 ARG LEU ALA ASP ARG ILE HIS LEU GLU GLU LEU ALA HIS SEQRES 27 A 484 MET GLY ILE LEU SER GLY SER VAL ASP ALA MET VAL GLN SEQRES 28 A 484 ALA HIS LEU GLY ALA VAL PHE MET PRO HIS GLY LEU GLY SEQRES 29 A 484 HIS PHE LEU GLY ILE ASP VAL HIS ASP VAL GLY GLY TYR SEQRES 30 A 484 PRO GLU GLY VAL GLU ARG ILE ASP GLU PRO GLY LEU ARG SEQRES 31 A 484 SER LEU ARG THR ALA ARG HIS LEU GLN PRO GLY MET VAL SEQRES 32 A 484 LEU THR VAL GLU PRO GLY ILE TYR PHE ILE ASP HIS LEU SEQRES 33 A 484 LEU ASP GLU ALA LEU ALA ASP PRO ALA ARG ALA SER PHE SEQRES 34 A 484 LEU ASN ARG GLU VAL LEU GLN ARG PHE ARG GLY PHE GLY SEQRES 35 A 484 GLY VAL ARG ILE GLU GLU ASP VAL VAL VAL THR ASP SER SEQRES 36 A 484 GLY ILE GLU LEU LEU THR CYS VAL PRO ARG THR VAL GLU SEQRES 37 A 484 GLU ILE GLU ALA CYS MET ALA GLY CYS ASP LYS ALA PHE SEQRES 38 A 484 THR PRO PHE SEQRES 1 B 484 GLY PRO SER PHE TRP LEU GLY ASN GLU THR LEU LYS VAL SEQRES 2 B 484 PRO LEU ALA LEU PHE ALA LEU ASN ARG GLN ARG LEU CYS SEQRES 3 B 484 GLU ARG LEU ARG LYS ASN PRO ALA VAL GLN ALA GLY SER SEQRES 4 B 484 ILE VAL VAL LEU GLN GLY GLY GLU GLU THR GLN ARG TYR SEQRES 5 B 484 CYS THR ASP THR GLY VAL LEU PHE ARG GLN GLU SER PHE SEQRES 6 B 484 PHE HIS TRP ALA PHE GLY VAL THR GLU PRO GLY CYS TYR SEQRES 7 B 484 GLY VAL ILE ASP VAL ASP THR GLY LYS SER THR LEU PHE SEQRES 8 B 484 VAL PRO ARG LEU PRO ALA SER HIS ALA THR TRP MET GLY SEQRES 9 B 484 LYS ILE HIS SER LYS GLU HIS PHE LYS GLU LYS TYR ALA SEQRES 10 B 484 VAL ASP ASP VAL GLN TYR VAL ASP GLU ILE ALA SER VAL SEQRES 11 B 484 LEU THR SER GLN LYS PRO SER VAL LEU LEU THR LEU ARG SEQRES 12 B 484 GLY VAL ASN THR ASP SER GLY SER VAL CYS ARG GLU ALA SEQRES 13 B 484 SER PHE ASP GLY ILE SER LYS PHE GLU VAL ASN ASN THR SEQRES 14 B 484 ILE LEU HIS PRO GLU ILE VAL GLU CYS ARG VAL PHE LYS SEQRES 15 B 484 THR ASP MET GLU LEU GLU VAL LEU ARG TYR THR ASN LYS SEQRES 16 B 484 ILE SER SER GLU ALA HIS ARG GLU VAL MET LYS ALA VAL SEQRES 17 B 484 LYS VAL GLY MET LYS GLU TYR GLU LEU GLU SER LEU PHE SEQRES 18 B 484 GLU HIS TYR CYS TYR SER ARG GLY GLY MET ARG HIS SER SEQRES 19 B 484 SER TYR THR CYS ILE CYS GLY SER GLY GLU ASN SER ALA SEQRES 20 B 484 VAL LEU HIS TYR GLY HIS ALA GLY ALA PRO ASN ASP ARG SEQRES 21 B 484 THR ILE GLN ASN GLY ASP MET CYS LEU PHE ASP MET GLY SEQRES 22 B 484 GLY GLU TYR TYR CYS PHE ALA SER ASP ILE THR CYS SER SEQRES 23 B 484 PHE PRO ALA ASN GLY LYS PHE THR ALA ASP GLN LYS ALA SEQRES 24 B 484 VAL TYR GLU ALA VAL LEU ARG SER SER ARG ALA VAL MET SEQRES 25 B 484 GLY ALA MET LYS PRO GLY VAL TRP TRP PRO ASP MET HIS SEQRES 26 B 484 ARG LEU ALA ASP ARG ILE HIS LEU GLU GLU LEU ALA HIS SEQRES 27 B 484 MET GLY ILE LEU SER GLY SER VAL ASP ALA MET VAL GLN SEQRES 28 B 484 ALA HIS LEU GLY ALA VAL PHE MET PRO HIS GLY LEU GLY SEQRES 29 B 484 HIS PHE LEU GLY ILE ASP VAL HIS ASP VAL GLY GLY TYR SEQRES 30 B 484 PRO GLU GLY VAL GLU ARG ILE ASP GLU PRO GLY LEU ARG SEQRES 31 B 484 SER LEU ARG THR ALA ARG HIS LEU GLN PRO GLY MET VAL SEQRES 32 B 484 LEU THR VAL GLU PRO GLY ILE TYR PHE ILE ASP HIS LEU SEQRES 33 B 484 LEU ASP GLU ALA LEU ALA ASP PRO ALA ARG ALA SER PHE SEQRES 34 B 484 LEU ASN ARG GLU VAL LEU GLN ARG PHE ARG GLY PHE GLY SEQRES 35 B 484 GLY VAL ARG ILE GLU GLU ASP VAL VAL VAL THR ASP SER SEQRES 36 B 484 GLY ILE GLU LEU LEU THR CYS VAL PRO ARG THR VAL GLU SEQRES 37 B 484 GLU ILE GLU ALA CYS MET ALA GLY CYS ASP LYS ALA PHE SEQRES 38 B 484 THR PRO PHE HET NA A 499 1 HET NA A 500 1 HET GLY A 503 4 HET PRO A 504 8 HET GOL A 505 6 HET NA B 499 1 HET NA B 500 1 HET GLY B 503 4 HET PRO B 504 8 HET GOL B 505 6 HET GOL B 506 6 HET GOL B 507 6 HET GOL B 508 6 HETNAM NA SODIUM ION HETNAM GLY GLYCINE HETNAM PRO PROLINE HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 NA 4(NA 1+) FORMUL 5 GLY 2(C2 H5 N O2) FORMUL 6 PRO 2(C5 H9 N O2) FORMUL 7 GOL 5(C3 H8 O3) FORMUL 16 HOH *951(H2 O) HELIX 1 AA1 LEU A 20 LYS A 36 1 17 HELIX 2 AA2 GLU A 68 GLY A 76 1 9 HELIX 3 AA3 SER A 103 MET A 108 1 6 HELIX 4 AA4 SER A 113 ALA A 122 1 10 HELIX 5 AA5 GLU A 131 LYS A 140 1 10 HELIX 6 AA6 GLY A 165 PHE A 169 5 5 HELIX 7 AA7 ILE A 175 PHE A 186 1 12 HELIX 8 AA8 THR A 188 VAL A 213 1 26 HELIX 9 AA9 LYS A 218 GLY A 235 1 18 HELIX 10 AB1 GLU A 249 VAL A 253 5 5 HELIX 11 AB2 THR A 299 MET A 320 1 22 HELIX 12 AB3 TRP A 325 MET A 344 1 20 HELIX 13 AB4 SER A 350 ALA A 357 1 8 HELIX 14 AB5 LEU A 359 MET A 364 1 6 HELIX 15 AB6 GLY A 393 LEU A 397 5 5 HELIX 16 AB7 ILE A 418 ASP A 428 1 11 HELIX 17 AB8 ASP A 428 SER A 433 1 6 HELIX 18 AB9 ASN A 436 GLN A 441 1 6 HELIX 19 AC1 ARG A 442 ARG A 444 5 3 HELIX 20 AC2 THR A 471 ALA A 480 1 10 HELIX 21 AC3 LEU B 20 ASN B 37 1 18 HELIX 22 AC4 GLU B 68 GLY B 76 1 9 HELIX 23 AC5 SER B 103 MET B 108 1 6 HELIX 24 AC6 SER B 113 ALA B 122 1 10 HELIX 25 AC7 GLU B 131 LYS B 140 1 10 HELIX 26 AC8 GLY B 165 PHE B 169 5 5 HELIX 27 AC9 ILE B 175 PHE B 186 1 12 HELIX 28 AD1 THR B 188 VAL B 213 1 26 HELIX 29 AD2 LYS B 218 GLY B 235 1 18 HELIX 30 AD3 GLU B 249 VAL B 253 5 5 HELIX 31 AD4 THR B 299 MET B 320 1 22 HELIX 32 AD5 TRP B 325 MET B 344 1 20 HELIX 33 AD6 SER B 350 ALA B 357 1 8 HELIX 34 AD7 LEU B 359 MET B 364 1 6 HELIX 35 AD8 GLY B 393 LEU B 397 5 5 HELIX 36 AD9 ILE B 418 ASP B 428 1 11 HELIX 37 AE1 ASP B 428 SER B 433 1 6 HELIX 38 AE2 ASN B 436 GLN B 441 1 6 HELIX 39 AE3 ARG B 442 ARG B 444 5 3 HELIX 40 AE4 THR B 471 GLY B 481 1 11 SHEET 1 AA1 2 SER A 8 PHE A 9 0 SHEET 2 AA1 2 VAL A 18 PRO A 19 -1 O VAL A 18 N PHE A 9 SHEET 1 AA2 6 ASP A 125 TYR A 128 0 SHEET 2 AA2 6 SER A 93 VAL A 97 1 N LEU A 95 O ASP A 125 SHEET 3 AA2 6 TYR A 83 ASP A 87 -1 N TYR A 83 O PHE A 96 SHEET 4 AA2 6 ILE A 45 GLN A 49 -1 N LEU A 48 O GLY A 84 SHEET 5 AA2 6 LEU A 144 LEU A 145 1 O LEU A 145 N ILE A 45 SHEET 6 AA2 6 VAL A 171 ASN A 172 1 O ASN A 172 N LEU A 144 SHEET 1 AA3 2 THR A 54 GLN A 55 0 SHEET 2 AA3 2 GLY A 62 VAL A 63 -1 O VAL A 63 N THR A 54 SHEET 1 AA4 2 HIS A 238 SER A 239 0 SHEET 2 AA4 2 GLY A 279 GLU A 280 -1 O GLU A 280 N HIS A 238 SHEET 1 AA5 3 ILE A 244 SER A 247 0 SHEET 2 AA5 3 MET A 272 MET A 277 -1 O ASP A 276 N ILE A 244 SHEET 3 AA5 3 ILE A 288 PRO A 293 -1 O PHE A 292 N CYS A 273 SHEET 1 AA6 3 VAL A 408 VAL A 411 0 SHEET 2 AA6 3 GLU A 453 VAL A 457 -1 O VAL A 455 N LEU A 409 SHEET 3 AA6 3 ILE A 462 LEU A 464 -1 O GLU A 463 N VAL A 456 SHEET 1 AA7 2 GLY A 414 TYR A 416 0 SHEET 2 AA7 2 GLY A 448 ARG A 450 -1 O VAL A 449 N ILE A 415 SHEET 1 AA8 2 SER B 8 PHE B 9 0 SHEET 2 AA8 2 VAL B 18 PRO B 19 -1 O VAL B 18 N PHE B 9 SHEET 1 AA9 6 ASP B 125 TYR B 128 0 SHEET 2 AA9 6 SER B 93 VAL B 97 1 N LEU B 95 O ASP B 125 SHEET 3 AA9 6 TYR B 83 ASP B 87 -1 N TYR B 83 O PHE B 96 SHEET 4 AA9 6 ILE B 45 GLN B 49 -1 N LEU B 48 O GLY B 84 SHEET 5 AA9 6 LEU B 144 LEU B 145 1 O LEU B 145 N ILE B 45 SHEET 6 AA9 6 VAL B 171 ASN B 172 1 O ASN B 172 N LEU B 144 SHEET 1 AB1 2 THR B 54 GLN B 55 0 SHEET 2 AB1 2 GLY B 62 VAL B 63 -1 O VAL B 63 N THR B 54 SHEET 1 AB2 2 HIS B 238 SER B 239 0 SHEET 2 AB2 2 GLY B 279 GLU B 280 -1 O GLU B 280 N HIS B 238 SHEET 1 AB3 3 ILE B 244 SER B 247 0 SHEET 2 AB3 3 MET B 272 MET B 277 -1 O ASP B 276 N ILE B 244 SHEET 3 AB3 3 ILE B 288 PRO B 293 -1 O PHE B 292 N CYS B 273 SHEET 1 AB4 3 VAL B 408 VAL B 411 0 SHEET 2 AB4 3 GLU B 453 VAL B 457 -1 O VAL B 455 N LEU B 409 SHEET 3 AB4 3 ILE B 462 LEU B 464 -1 O GLU B 463 N VAL B 456 SHEET 1 AB5 2 GLY B 414 TYR B 416 0 SHEET 2 AB5 2 GLY B 448 ARG B 450 -1 O VAL B 449 N ILE B 415 SSBOND 1 CYS A 58 CYS B 158 1555 1555 2.04 SSBOND 2 CYS A 158 CYS B 58 1555 1555 2.05 SSBOND 3 CYS A 482 CYS A 482 1555 3555 2.04 SSBOND 4 CYS B 482 CYS B 482 1555 3555 2.03 LINK OD2 ASP A 276 NA NA A 500 1555 1555 2.70 LINK OD2 ASP A 287 NA NA A 499 1555 1555 2.38 LINK OE2 GLU A 412 NA NA A 499 1555 1555 2.41 LINK OE1 GLU A 412 NA NA A 500 1555 1555 2.48 LINK OE2 GLU A 452 NA NA A 499 1555 1555 2.42 LINK OE1 GLU A 452 NA NA A 500 1555 1555 2.61 LINK OE2 GLU A 452 NA NA A 500 1555 1555 3.16 LINK NA NA A 499 O GLY A 503 1555 1555 2.57 LINK NA NA A 500 O GLY A 503 1555 1555 3.13 LINK OD2 ASP B 276 NA NA B 500 1555 1555 2.59 LINK OD2 ASP B 287 NA NA B 499 1555 1555 2.32 LINK OE2 GLU B 412 NA NA B 499 1555 1555 2.47 LINK OE1 GLU B 412 NA NA B 500 1555 1555 2.55 LINK OE2 GLU B 452 NA NA B 499 1555 1555 2.50 LINK OE1 GLU B 452 NA NA B 500 1555 1555 2.67 LINK NA NA B 499 O GLY B 503 1555 1555 2.52 LINK NA NA B 500 O GLY B 503 1555 1555 3.16 SITE 1 AC1 6 ASP A 287 HIS A 370 GLU A 412 GLU A 452 SITE 2 AC1 6 NA A 500 GLY A 503 SITE 1 AC2 7 ASP A 276 ASP A 287 GLU A 412 GLU A 452 SITE 2 AC2 7 NA A 499 GLY A 503 PRO A 504 SITE 1 AC3 10 TYR A 241 ILE A 244 ASP A 276 ASP A 287 SITE 2 AC3 10 HIS A 370 HIS A 377 NA A 499 NA A 500 SITE 3 AC3 10 PRO A 504 HOH A 768 SITE 1 AC4 10 LEU A 254 HIS A 255 HIS A 377 ARG A 398 SITE 2 AC4 10 GLU A 412 ARG A 450 NA A 500 GLY A 503 SITE 3 AC4 10 HOH A 801 HOH A 824 SITE 1 AC5 8 PHE A 9 TRP A 10 LEU A 11 LYS A 120 SITE 2 AC5 8 HOH A 602 HOH A 611 HOH A 626 ASP B 264 SITE 1 AC6 6 ASP B 287 HIS B 370 GLU B 412 GLU B 452 SITE 2 AC6 6 NA B 500 GLY B 503 SITE 1 AC7 7 ASP B 276 ASP B 287 GLU B 412 GLU B 452 SITE 2 AC7 7 NA B 499 GLY B 503 PRO B 504 SITE 1 AC8 10 TYR B 241 ILE B 244 ASP B 276 ASP B 287 SITE 2 AC8 10 HIS B 370 HIS B 377 NA B 499 NA B 500 SITE 3 AC8 10 PRO B 504 HOH B 884 SITE 1 AC9 11 TRP A 107 LEU B 254 HIS B 255 HIS B 377 SITE 2 AC9 11 ARG B 398 GLU B 412 ARG B 450 NA B 500 SITE 3 AC9 11 GLY B 503 HOH B 734 HOH B 801 SITE 1 AD1 5 ALA B 342 HIS B 343 LEU B 347 SER B 348 SITE 2 AD1 5 HOH B 783 SITE 1 AD2 10 HIS A 255 HIS A 377 HOH A1010 ASP B 60 SITE 2 AD2 10 THR B 61 GLY B 62 HOH B 621 HOH B 643 SITE 3 AD2 10 HOH B 674 HOH B 984 SITE 1 AD3 6 ASP A 264 PHE B 9 TRP B 10 HOH B 608 SITE 2 AD3 6 HOH B 610 HOH B 865 SITE 1 AD4 2 GLU B 387 ARG B 388 CRYST1 103.554 106.942 216.524 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009657 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009351 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004618 0.00000