HEADER TRANSFERASE 23-OCT-16 5M5Z TITLE CHAETOMIUM THERMOPHILUM BETA-1-3-GLUCANASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA-1,3-GLUCANASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 OTHER_DETAILS: THE MATURE PROTEIN STARTS FROM A GLN RESIDUE WHICH WAS COMPND 6 FOUND POST-TRANSLATIONALLY MODIFIED TO PYROGLUTAMATE (PCA) SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CHAETOMIUM THERMOPHILUM; SOURCE 3 ORGANISM_TAXID: 209285; SOURCE 4 GENE: GLUN; SOURCE 5 EXPRESSION_SYSTEM: KOMAGATAELLA PASTORIS CBS 7435; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 981350 KEYWDS CELLULOSE, GLUCANASE, FUNGUS, THERMOSTABILITY, GLUCANS, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR A.C.PAPAGEORGIOU,J.CHEN,D.LI REVDAT 5 17-JAN-24 5M5Z 1 HETSYN REVDAT 4 29-JUL-20 5M5Z 1 COMPND REMARK HETNAM LINK REVDAT 4 2 1 SITE ATOM REVDAT 3 11-MAR-20 5M5Z 1 SEQRES SITE ATOM REVDAT 2 14-JUN-17 5M5Z 1 JRNL REVDAT 1 17-MAY-17 5M5Z 0 JRNL AUTH A.C.PAPAGEORGIOU,J.CHEN,D.LI JRNL TITL CRYSTAL STRUCTURE AND BIOLOGICAL IMPLICATIONS OF A GLYCOSIDE JRNL TITL 2 HYDROLASE FAMILY 55 BETA-1,3-GLUCANASE FROM CHAETOMIUM JRNL TITL 3 THERMOPHILUM. JRNL REF BIOCHIM. BIOPHYS. ACTA V.1865 1030 2017 JRNL REFN ISSN 0006-3002 JRNL PMID 28479293 JRNL DOI 10.1016/J.BBAPAP.2017.05.002 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH A.C.PAPAGEORGIOU,D.LI REMARK 1 TITL EXPRESSION, PURIFICATION AND CRYSTALLIZATION OF A FAMILY 55 REMARK 1 TITL 2 BETA-1,3-GLUCANASE FROM CHAETOMIUM THERMOPHILUM. REMARK 1 REF ACTA CRYSTALLOGR F STRUCT V. 71 680 2015 REMARK 1 REF 2 BIOL COMMUN REMARK 1 REFN ESSN 2053-230X REMARK 1 PMID 26057795 REMARK 1 DOI 10.1107/S2053230X15006366 REMARK 2 REMARK 2 RESOLUTION. 1.25 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10_2155: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.25 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.92 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 92.6 REMARK 3 NUMBER OF REFLECTIONS : 182131 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.124 REMARK 3 R VALUE (WORKING SET) : 0.123 REMARK 3 FREE R VALUE : 0.141 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.040 REMARK 3 FREE R VALUE TEST SET COUNT : 9182 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 35.9375 - 3.8825 0.95 6038 341 0.1311 0.1345 REMARK 3 2 3.8825 - 3.0822 0.97 6075 336 0.1287 0.1280 REMARK 3 3 3.0822 - 2.6927 0.96 6025 292 0.1393 0.1326 REMARK 3 4 2.6927 - 2.4466 0.97 6006 353 0.1334 0.1411 REMARK 3 5 2.4466 - 2.2712 0.98 6083 322 0.1280 0.1562 REMARK 3 6 2.2712 - 2.1374 0.95 5890 353 0.1212 0.1400 REMARK 3 7 2.1374 - 2.0303 0.96 5961 321 0.1187 0.1377 REMARK 3 8 2.0303 - 1.9420 0.97 5994 372 0.1171 0.1350 REMARK 3 9 1.9420 - 1.8672 0.96 5970 333 0.1236 0.1403 REMARK 3 10 1.8672 - 1.8028 0.96 5944 330 0.1253 0.1534 REMARK 3 11 1.8028 - 1.7464 0.96 5982 320 0.1213 0.1494 REMARK 3 12 1.7464 - 1.6965 0.94 5829 320 0.1182 0.1449 REMARK 3 13 1.6965 - 1.6518 0.95 5891 348 0.1162 0.1385 REMARK 3 14 1.6518 - 1.6115 0.96 5964 293 0.1103 0.1187 REMARK 3 15 1.6115 - 1.5749 0.96 5951 326 0.1021 0.1362 REMARK 3 16 1.5749 - 1.5414 0.96 6006 304 0.1031 0.1224 REMARK 3 17 1.5414 - 1.5105 0.96 5994 297 0.1030 0.1487 REMARK 3 18 1.5105 - 1.4820 0.96 5930 295 0.1042 0.1361 REMARK 3 19 1.4820 - 1.4556 0.93 5884 281 0.1093 0.1529 REMARK 3 20 1.4556 - 1.4309 0.93 5816 312 0.1090 0.1435 REMARK 3 21 1.4309 - 1.4078 0.95 5855 293 0.1103 0.1464 REMARK 3 22 1.4078 - 1.3861 0.95 5947 255 0.1098 0.1390 REMARK 3 23 1.3861 - 1.3658 0.94 5853 289 0.1117 0.1414 REMARK 3 24 1.3658 - 1.3465 0.95 5876 335 0.1171 0.1666 REMARK 3 25 1.3465 - 1.3283 0.94 5843 317 0.1178 0.1463 REMARK 3 26 1.3283 - 1.3111 0.92 5734 277 0.1206 0.1716 REMARK 3 27 1.3111 - 1.2947 0.86 5411 275 0.1313 0.1730 REMARK 3 28 1.2947 - 1.2791 0.78 4839 237 0.1291 0.1568 REMARK 3 29 1.2791 - 1.2642 0.70 4340 227 0.1307 0.1699 REMARK 3 30 1.2642 - 1.2500 0.65 3987 228 0.1307 0.1525 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.070 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 12.470 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 6.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 6156 REMARK 3 ANGLE : 0.883 8443 REMARK 3 CHIRALITY : 0.084 933 REMARK 3 PLANARITY : 0.006 1125 REMARK 3 DIHEDRAL : 14.465 2228 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5M5Z COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 24-OCT-16. REMARK 100 THE DEPOSITION ID IS D_1200001898. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-JUN-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.976 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 424202 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.250 REMARK 200 RESOLUTION RANGE LOW (A) : 45.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.8 REMARK 200 DATA REDUNDANCY : 2.300 REMARK 200 R MERGE (I) : 0.03100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.25 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.27 REMARK 200 COMPLETENESS FOR SHELL (%) : 65.8 REMARK 200 DATA REDUNDANCY IN SHELL : 1.90 REMARK 200 R MERGE FOR SHELL (I) : 0.14900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3EQN REMARK 200 REMARK 200 REMARK: RODS REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.91 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.19 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.8 M NA/K PHOSPHATE, PH 6.8, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 42.63850 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2100 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23730 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 2.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR A 784 REMARK 465 ALA A 785 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 1043 O HOH A 1726 1.82 REMARK 500 O HOH A 981 O HOH A 1187 1.84 REMARK 500 O HOH A 1120 O HOH A 1771 1.84 REMARK 500 O HOH A 1543 O HOH A 2010 1.85 REMARK 500 O HOH A 1042 O HOH A 1305 1.87 REMARK 500 O HOH A 1930 O HOH A 2054 1.88 REMARK 500 O HOH A 1670 O HOH A 1999 1.88 REMARK 500 O HOH A 1793 O HOH A 1872 1.89 REMARK 500 O HOH A 1908 O HOH A 2009 1.90 REMARK 500 O7 NAG B 1 O HOH A 901 1.92 REMARK 500 O HOH A 1901 O HOH A 2023 1.92 REMARK 500 OE1 GLN A 742 O HOH A 902 1.92 REMARK 500 O HOH A 1879 O HOH A 2028 1.93 REMARK 500 OD1 ASN A 283 O HOH A 903 1.93 REMARK 500 O HOH A 1681 O HOH A 1915 1.93 REMARK 500 O HOH A 1183 O HOH A 1955 1.94 REMARK 500 O HOH A 996 O HOH A 1093 1.95 REMARK 500 O HOH A 2051 O HOH A 2071 1.97 REMARK 500 O HOH A 1694 O HOH A 1881 1.97 REMARK 500 O HOH A 1093 O HOH A 1803 1.99 REMARK 500 O HOH A 949 O HOH A 1639 2.00 REMARK 500 O HOH A 1952 O HOH A 2036 2.00 REMARK 500 OE1 GLU A 441 O HOH A 904 2.00 REMARK 500 O HOH A 1023 O HOH A 1523 2.01 REMARK 500 O HOH A 1326 O HOH A 1396 2.01 REMARK 500 O HOH A 2023 O HOH A 2066 2.02 REMARK 500 O HOH A 1602 O HOH A 1683 2.03 REMARK 500 O HOH A 1428 O HOH A 1716 2.03 REMARK 500 O HOH A 1465 O HOH A 1838 2.04 REMARK 500 NZ LYS A 455 O HOH A 905 2.04 REMARK 500 O HOH A 2038 O HOH A 2041 2.04 REMARK 500 O HOH A 909 O HOH A 1470 2.04 REMARK 500 NE2 GLN A 42 O HOH A 906 2.04 REMARK 500 O HOH A 1096 O HOH A 1628 2.06 REMARK 500 O HOH A 1411 O HOH A 1701 2.06 REMARK 500 O HOH A 1551 O HOH A 1566 2.07 REMARK 500 O HOH A 985 O HOH A 1407 2.08 REMARK 500 O HOH A 1305 O HOH A 1538 2.08 REMARK 500 O HOH A 1630 O HOH A 1909 2.10 REMARK 500 O HOH A 1659 O HOH A 1665 2.14 REMARK 500 OE1 GLN A 351 O HOH A 907 2.15 REMARK 500 O HOH A 1636 O HOH A 2009 2.15 REMARK 500 O HOH A 1904 O HOH A 1986 2.15 REMARK 500 O HOH A 937 O HOH A 1252 2.16 REMARK 500 O HOH A 2060 O HOH A 2075 2.17 REMARK 500 O HOH A 1796 O HOH A 2039 2.18 REMARK 500 O HOH A 1908 O HOH A 2038 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 1026 O HOH A 1693 1655 1.94 REMARK 500 O HOH A 1594 O HOH A 1700 2556 2.15 REMARK 500 O HOH A 2003 O HOH A 2057 1455 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 92 164.80 179.59 REMARK 500 ASP A 146 84.71 -160.24 REMARK 500 PHE A 163 74.00 64.34 REMARK 500 ASN A 168 66.46 72.01 REMARK 500 TRP A 186 78.45 -104.15 REMARK 500 ALA A 189 -146.02 -120.79 REMARK 500 ASN A 196 60.13 61.52 REMARK 500 SER A 220 78.72 -151.59 REMARK 500 ASN A 327 62.66 62.15 REMARK 500 GLN A 375 89.63 -155.14 REMARK 500 VAL A 424 -45.17 -136.49 REMARK 500 VAL A 424 -46.35 -135.87 REMARK 500 SER A 479 -47.95 -152.87 REMARK 500 SER A 479 -47.67 -153.05 REMARK 500 GLU A 551 -167.80 -120.41 REMARK 500 ASN A 558 85.74 -150.84 REMARK 500 ASN A 588 72.35 58.97 REMARK 500 SER A 729 35.58 -142.10 REMARK 500 ASN A 772 -151.94 -105.71 REMARK 500 PHE A 774 -59.73 -163.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ALA A 649 LEU A 650 -33.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2066 DISTANCE = 5.86 ANGSTROMS REMARK 525 HOH A2067 DISTANCE = 6.07 ANGSTROMS REMARK 525 HOH A2068 DISTANCE = 6.07 ANGSTROMS REMARK 525 HOH A2069 DISTANCE = 6.10 ANGSTROMS REMARK 525 HOH A2070 DISTANCE = 6.15 ANGSTROMS REMARK 525 HOH A2071 DISTANCE = 6.19 ANGSTROMS REMARK 525 HOH A2072 DISTANCE = 6.23 ANGSTROMS REMARK 525 HOH A2073 DISTANCE = 6.23 ANGSTROMS REMARK 525 HOH A2074 DISTANCE = 6.25 ANGSTROMS REMARK 525 HOH A2075 DISTANCE = 6.54 ANGSTROMS REMARK 525 HOH A2076 DISTANCE = 6.81 ANGSTROMS REMARK 525 HOH A2077 DISTANCE = 7.06 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 809 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 436 O REMARK 620 2 HOH A1120 O 62.9 REMARK 620 3 HOH A1195 O 82.4 134.6 REMARK 620 4 HOH A1368 O 69.6 63.6 131.9 REMARK 620 5 HOH A1700 O 96.0 127.5 81.7 64.0 REMARK 620 6 HOH A1747 O 89.3 65.1 87.6 128.6 167.4 REMARK 620 N 1 2 3 4 5 DBREF 5M5Z A 29 785 UNP D8UU87 D8UU87_9PEZI 29 785 SEQRES 1 A 757 PCA ALA PRO SER GLY TRP TRP LEU ALA ASN ILE ALA ARG SEQRES 2 A 757 GLN GLY ARG PRO ALA PHE ASN PRO ASP PRO ASN TYR LYS SEQRES 3 A 757 ILE PHE ARG ASN VAL LYS ASP TYR GLY ALA VAL GLY ASP SEQRES 4 A 757 GLY VAL THR ASP ASP THR ALA ALA ILE ASN ALA ALA ILE SEQRES 5 A 757 SER ASP GLY ASN ARG CYS GLY GLN GLY CYS SER SER GLN SEQRES 6 A 757 THR THR THR PRO ALA LEU VAL TYR PHE PRO PRO GLY THR SEQRES 7 A 757 TYR LEU VAL SER LYS PRO ILE ILE SER TYR TYR TYR THR SEQRES 8 A 757 GLN LEU VAL GLY ASP ALA ILE SER PRO PRO THR LEU LYS SEQRES 9 A 757 ALA ALA ALA ASN PHE GLU GLY MET ALA VAL ILE ASP ALA SEQRES 10 A 757 ASP PRO TYR ASP GLU ASN GLY ASN ASN TRP TRP THR ASN SEQRES 11 A 757 GLN ASN ASN PHE PHE ARG GLN VAL ARG ASN PHE VAL ILE SEQRES 12 A 757 ASP LEU THR ALA MET PRO PHE GLU VAL GLY SER GLY ILE SEQRES 13 A 757 HIS TRP GLN VAL ALA GLN ALA THR SER LEU GLN ASN ILE SEQRES 14 A 757 VAL PHE ASN MET ARG THR ASP GLY GLY ASP ASP ASN ARG SEQRES 15 A 757 GLN GLN GLY ILE PHE MET ASP ASN GLY SER GLY GLY LEU SEQRES 16 A 757 MET VAL ASP LEU VAL PHE ASN GLY GLY ARG TYR GLY ALA SEQRES 17 A 757 PHE PHE GLY ASN GLN GLN PHE THR THR ARG ASN LEU THR SEQRES 18 A 757 PHE ASN ASN CYS LYS THR ALA ILE PHE MET ASN TRP ASN SEQRES 19 A 757 TRP ALA TRP THR PHE GLN ASP VAL LYS ILE ASN ASN CYS SEQRES 20 A 757 GLU VAL GLY ILE ASP MET SER ASN GLY GLY PRO ASP GLY SEQRES 21 A 757 GLN THR VAL GLY SER VAL LEU LEU LEU ASP SER HIS ILE SEQRES 22 A 757 THR ASN THR GLY ILE GLY ILE LYS THR ALA TYR ASP PRO SEQRES 23 A 757 ALA GLN PRO HIS THR ASN GLY THR LEU ILE LEU ASP ASN SEQRES 24 A 757 VAL GLU MET THR GLY THR PRO ILE ALA VAL GLN ASN ASP SEQRES 25 A 757 ALA THR GLY THR THR ILE VAL ASP GLY ASN GLN LYS ILE SEQRES 26 A 757 ALA PHE PHE ALA GLN GLY ARG THR TYR GLY GLY SER ILE SEQRES 27 A 757 GLY GLY THR SER GLY LYS ALA VAL GLN THR THR GLU GLN SEQRES 28 A 757 ALA ILE VAL LYS PRO ASN VAL LEU LEU ASP PRO ALA THR SEQRES 29 A 757 GLY LYS VAL PHE THR ARG SER ARG PRO GLN TYR GLU ASP SEQRES 30 A 757 VAL PRO VAL SER SER PHE VAL SER VAL LYS ALA ASN GLY SEQRES 31 A 757 ALA LYS GLY ASP GLY VAL THR ASP ASP THR ASP ALA ILE SEQRES 32 A 757 GLN ALA ILE PHE ASP SER VAL THR PRO GLU GLN ILE VAL SEQRES 33 A 757 TYR PHE ASP HIS GLY ALA TYR ILE ILE THR LYS THR VAL SEQRES 34 A 757 ARG VAL PRO PRO ASN ILE ARG ILE THR GLY GLU ALA LEU SEQRES 35 A 757 PRO LEU ILE LEU ALA GLY GLY ASP SER PHE PHE LYS ASP SEQRES 36 A 757 GLN ALA ASN PRO LYS PRO VAL PHE GLN VAL GLY GLN PRO SEQRES 37 A 757 GLY GLU ARG GLY ARG VAL GLU MET SER ASP LEU ILE PHE SEQRES 38 A 757 GLY THR ALA GLY PRO GLN PRO GLY ALA ILE MET MET GLU SEQRES 39 A 757 TRP ASN VAL ALA GLY MET GLU PRO GLY ALA ALA GLY LEU SEQRES 40 A 757 TRP ASP VAL HIS THR ARG ILE GLY GLY TYR ALA GLY THR SEQRES 41 A 757 GLN LEU GLU LEU GLU GLN CYS ALA LYS ASN PRO ASN ILE SEQRES 42 A 757 THR ASN PRO ILE LYS PRO GLU CYS PHE GLY SER PHE LEU SEQRES 43 A 757 MET LEU HIS VAL THR PRO GLY GLY SER ALA TYR LEU GLU SEQRES 44 A 757 ASN THR TRP TYR TRP VAL ALA ASP HIS ALA LEU GLU PRO SEQRES 45 A 757 GLU ALA ARG ASP GLN GLN ILE ASP VAL PHE ASN GLY ARG SEQRES 46 A 757 GLY VAL LEU ILE GLU GLY ASP GLY PRO VAL TRP GLY TRP SEQRES 47 A 757 GLY THR SER SER GLU HIS SER VAL LEU HIS ASN TYR GLN SEQRES 48 A 757 PHE ASN ASN ALA ARG ASN VAL PHE LEU ALA LEU ILE GLN SEQRES 49 A 757 THR GLU THR PRO TYR PHE GLN GLY ASN PRO ASP ALA THR SEQRES 50 A 757 GLN PRO PHE THR VAL ASN PRO ASN PHE ALA ASP PRO ASP SEQRES 51 A 757 PHE ALA THR SER CYS THR ASN SER PRO ASN PRO GLU GLN SEQRES 52 A 757 CYS LYS ARG ALA TRP GLY VAL ARG ALA ILE ASN SER THR SEQRES 53 A 757 ASP VAL PHE ILE TYR GLY ALA GLY LEU TYR SER PHE PHE SEQRES 54 A 757 ASP ASN TYR ASP GLN GLU CYS LEU LYS THR GLN SER CYS SEQRES 55 A 757 GLN THR ASN MET VAL SER LEU GLU GLY ASN SER GLN VAL SEQRES 56 A 757 HIS LEU PHE GLY LEU SER THR LYS ALA SER VAL ASN MET SEQRES 57 A 757 LEU THR VAL ASP GLY ASN ALA VAL ALA LEU ASP ALA ASP SEQRES 58 A 757 ASN ARG ASN ASN PHE CYS ALA THR VAL ALA TRP PHE GLN SEQRES 59 A 757 SER THR ALA MODRES 5M5Z PCA A 29 GLN MODIFIED RESIDUE HET PCA A 29 8 HET NAG B 1 14 HET NAG B 2 14 HET NAG C 1 14 HET NAG C 2 14 HET NAG A 803 14 HET NAG A 806 14 HET GOL A 807 6 HET CL A 808 1 HET NA A 809 1 HETNAM PCA PYROGLUTAMIC ACID HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM GOL GLYCEROL HETNAM CL CHLORIDE ION HETNAM NA SODIUM ION HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 PCA C5 H7 N O3 FORMUL 2 NAG 6(C8 H15 N O6) FORMUL 6 GOL C3 H8 O3 FORMUL 7 CL CL 1- FORMUL 8 NA NA 1+ FORMUL 9 HOH *1177(H2 O) HELIX 1 AA1 TRP A 34 ILE A 39 1 6 HELIX 2 AA2 LYS A 60 GLY A 63 5 4 HELIX 3 AA3 ASP A 72 ASP A 82 1 11 HELIX 4 AA4 THR A 157 ASN A 161 5 5 HELIX 5 AA5 GLY A 205 ASN A 209 5 5 HELIX 6 AA6 PRO A 384 LEU A 388 5 5 HELIX 7 AA7 PRO A 407 SER A 409 5 3 HELIX 8 AA8 LYS A 415 GLY A 418 5 4 HELIX 9 AA9 ASP A 427 VAL A 438 1 12 HELIX 10 AB1 GLU A 551 ALA A 556 1 6 HELIX 11 AB2 LYS A 566 PHE A 570 5 5 HELIX 12 AB3 GLU A 599 ARG A 603 5 5 HELIX 13 AB4 ASN A 671 ALA A 675 5 5 HELIX 14 AB5 ASP A 678 CYS A 683 1 6 HELIX 15 AB6 ASN A 688 CYS A 692 5 5 HELIX 16 AB7 GLN A 722 GLN A 728 5 7 HELIX 17 AB8 ALA A 768 ASN A 770 5 3 SHEET 1 A12 PHE A 56 ASN A 58 0 SHEET 2 A12 ALA A 98 PHE A 102 1 SHEET 3 A12 THR A 119 GLY A 123 1 SHEET 4 A12 ARG A 164 ARG A 167 1 SHEET 5 A12 THR A 192 GLN A 195 1 SHEET 6 A12 LEU A 223 VAL A 225 1 SHEET 7 A12 THR A 244 ARG A 246 1 SHEET 8 A12 THR A 266 GLN A 268 1 SHEET 9 A12 SER A 293 LEU A 297 1 SHEET 10 A12 THR A 322 ASP A 326 1 SHEET 11 A12 PHE A 355 THR A 361 -1 SHEET 12 A12 LYS A 372 THR A 377 -1 SHEET 1 B 8 THR A 106 VAL A 109 0 SHEET 2 B 8 PRO A 129 ALA A 133 1 SHEET 3 B 8 PHE A 169 ASP A 172 1 SHEET 4 B 8 ILE A 197 ASN A 200 1 SHEET 5 B 8 LEU A 227 ASN A 230 1 SHEET 6 B 8 LEU A 248 ASN A 251 1 SHEET 7 B 8 VAL A 270 ASN A 273 1 SHEET 8 B 8 HIS A 300 THR A 302 1 SHEET 1 C 2 ILE A 308 THR A 310 0 SHEET 2 C 2 VAL A 337 ASN A 339 1 SHEET 1 D10 PHE A 411 SER A 413 0 SHEET 2 D10 ILE A 443 PHE A 446 1 SHEET 3 D10 ASN A 462 GLY A 467 1 SHEET 4 D10 ARG A 501 SER A 505 1 SHEET 5 D10 ALA A 533 TRP A 536 1 SHEET 6 D10 ALA A 584 GLU A 587 1 SHEET 7 D10 VAL A 623 TRP A 626 1 SHEET 8 D10 VAL A 646 ALA A 649 1 SHEET 9 D10 VAL A 706 TYR A 709 1 SHEET 10 D10 VAL A 743 PHE A 746 1 SHEET 1 E 6 ALA A 450 ILE A 453 0 SHEET 2 E 6 PRO A 471 ALA A 475 1 SHEET 3 E 6 LEU A 507 THR A 511 1 SHEET 4 E 6 VAL A 538 ILE A 542 1 SHEET 5 E 6 THR A 589 VAL A 593 1 SHEET 6 E 6 THR A 628 GLU A 631 1 SHEET 1 F 9 VAL A 457 VAL A 459 0 SHEET 2 F 9 PHE A 491 VAL A 493 1 SHEET 3 F 9 MET A 521 TRP A 523 1 SHEET 4 F 9 LEU A 576 VAL A 578 1 SHEET 5 F 9 VAL A 615 GLY A 619 1 SHEET 6 F 9 TYR A 638 ALA A 643 1 SHEET 7 F 9 VAL A 698 ILE A 701 1 SHEET 8 F 9 VAL A 735 GLU A 738 1 SHEET 9 F 9 LEU A 757 VAL A 759 1 SHEET 1 G 4 ILE A 651 GLU A 654 0 SHEET 2 G 4 ALA A 711 TYR A 714 1 SHEET 3 G 4 LEU A 748 LYS A 751 1 SHEET 4 G 4 ALA A 776 VAL A 778 -1 SHEET 1 H 2 ALA A 236 ASN A 240 0 SHEET 2 H 2 ILE A 257 ASN A 262 1 SSBOND 1 CYS A 86 CYS A 90 1555 1555 2.06 SSBOND 2 CYS A 555 CYS A 569 1555 1555 2.05 SSBOND 3 CYS A 683 CYS A 692 1555 1555 2.11 SSBOND 4 CYS A 724 CYS A 730 1555 1555 2.04 LINK C PCA A 29 N ALA A 30 1555 1555 1.33 LINK ND2 ASN A 247 C1 NAG B 1 1555 1555 1.44 LINK ND2 ASN A 320 C1 NAG C 1 1555 1555 1.42 LINK ND2 ASN A 560 C1 NAG A 806 1555 1555 1.44 LINK ND2 ASN A 702 C1 NAG A 803 1555 1555 1.44 LINK O4 NAG B 1 C1 NAG B 2 1555 1555 1.43 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.44 LINK O ASP A 436 NA NA A 809 1555 1555 2.58 LINK NA NA A 809 O HOH A1120 1555 1555 2.63 LINK NA NA A 809 O HOH A1195 1555 1555 2.63 LINK NA NA A 809 O HOH A1368 1555 1555 2.38 LINK NA NA A 809 O HOH A1700 1555 1555 3.15 LINK NA NA A 809 O HOH A1747 1555 1555 2.62 CISPEP 1 GLY A 221 GLY A 222 0 3.45 CISPEP 2 GLY A 621 PRO A 622 0 5.76 CISPEP 3 GLN A 659 GLY A 660 0 9.81 CISPEP 4 ASN A 661 PRO A 662 0 5.47 CISPEP 5 GLN A 666 PRO A 667 0 3.88 CRYST1 63.774 85.277 66.765 90.00 92.83 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015680 0.000000 0.000776 0.00000 SCALE2 0.000000 0.011726 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014996 0.00000 HETATM 1 N PCA A 29 -19.035 18.833 0.676 1.00 19.47 N ANISOU 1 N PCA A 29 2220 2975 2204 -575 -237 367 N HETATM 2 CA PCA A 29 -19.089 17.876 1.776 1.00 17.68 C ANISOU 2 CA PCA A 29 1870 2746 2104 -626 -401 226 C HETATM 3 CB PCA A 29 -17.694 17.346 2.099 1.00 18.11 C ANISOU 3 CB PCA A 29 1941 2792 2149 -719 -334 271 C HETATM 4 CG PCA A 29 -16.715 18.208 1.330 1.00 19.06 C ANISOU 4 CG PCA A 29 2170 2896 2176 -730 -198 406 C HETATM 5 CD PCA A 29 -17.606 19.020 0.434 1.00 19.49 C ANISOU 5 CD PCA A 29 2269 2972 2163 -765 -218 427 C HETATM 6 OE PCA A 29 -17.140 19.764 -0.432 1.00 20.47 O ANISOU 6 OE PCA A 29 2422 3147 2208 -821 -265 520 O HETATM 7 C PCA A 29 -19.675 18.480 3.045 1.00 15.81 C ANISOU 7 C PCA A 29 1526 2505 1975 -588 -528 127 C HETATM 8 O PCA A 29 -19.540 19.674 3.302 1.00 16.09 O ANISOU 8 O PCA A 29 1518 2508 2085 -543 -645 289 O