HEADER SIGNALING PROTEIN 26-OCT-16 5M6X TITLE CRYSTAL STRUCTURE OF HUMAN RHOGAP MUTATED IN ITS ARGININE FINGER TITLE 2 (R85A) IN COMPLEX WITH RHOA.GDP.MGF3- HUMAN COMPND MOL_ID: 1; COMPND 2 MOLECULE: RHO GTPASE-ACTIVATING PROTEIN 1; COMPND 3 CHAIN: A, H; COMPND 4 SYNONYM: CDC42 GTPASE-ACTIVATING PROTEIN,GTPASE-ACTIVATING PROTEIN COMPND 5 RHOGAP,RHO-RELATED SMALL GTPASE PROTEIN ACTIVATOR,RHO-TYPE GTPASE- COMPND 6 ACTIVATING PROTEIN 1,P50-RHOGAP; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: TRANSFORMING PROTEIN RHOA; COMPND 10 CHAIN: B, I; COMPND 11 SYNONYM: RHO CDNA CLONE 12,H12; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ARHGAP1, CDC42GAP, RHOGAP1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: RHOA, ARH12, ARHA, RHO12; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS RHOGAP, ARGININE FINGER, RHOA, TRANSITION STATE, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR E.PELLEGRINI,M.W.BOWLER REVDAT 3 17-JAN-24 5M6X 1 REMARK LINK REVDAT 2 06-SEP-17 5M6X 1 JRNL REVDAT 1 17-MAY-17 5M6X 0 JRNL AUTH Y.JIN,R.W.MOLT,E.PELLEGRINI,M.J.CLIFF,M.W.BOWLER, JRNL AUTH 2 N.G.J.RICHARDS,G.M.BLACKBURN,J.P.WALTHO JRNL TITL ASSESSING THE INFLUENCE OF MUTATION ON GTPASE TRANSITION JRNL TITL 2 STATES BY USING X-RAY CRYSTALLOGRAPHY, (19) F NMR, AND DFT JRNL TITL 3 APPROACHES. JRNL REF ANGEW. CHEM. INT. ED. ENGL. V. 56 9732 2017 JRNL REFN ESSN 1521-3773 JRNL PMID 28498638 JRNL DOI 10.1002/ANIE.201703074 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0135 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 76.55 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 84.1 REMARK 3 NUMBER OF REFLECTIONS : 23276 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.227 REMARK 3 R VALUE (WORKING SET) : 0.224 REMARK 3 FREE R VALUE : 0.272 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1260 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.46 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1777 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 87.51 REMARK 3 BIN R VALUE (WORKING SET) : 0.2900 REMARK 3 BIN FREE R VALUE SET COUNT : 107 REMARK 3 BIN FREE R VALUE : 0.3220 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5838 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 66 REMARK 3 SOLVENT ATOMS : 183 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.35 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.91000 REMARK 3 B22 (A**2) : -2.06000 REMARK 3 B33 (A**2) : -0.15000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 1.60000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.361 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.269 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 12.050 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.907 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.857 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6047 ; 0.007 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 5817 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8224 ; 1.135 ; 1.980 REMARK 3 BOND ANGLES OTHERS (DEGREES): 13391 ; 0.879 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 728 ; 5.027 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 289 ;34.022 ;25.017 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1042 ;11.878 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 33 ;11.792 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 937 ; 0.060 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6769 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1348 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2927 ; 0.594 ; 2.435 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2926 ; 0.594 ; 2.434 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3650 ; 1.108 ; 3.646 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 3651 ; 1.108 ; 3.647 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3120 ; 0.362 ; 2.472 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 3106 ; 0.362 ; 2.476 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 4556 ; 0.713 ; 3.674 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 6753 ; 2.106 ;18.520 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 6712 ; 2.058 ;18.537 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5M6X COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 26-OCT-16. REMARK 100 THE DEPOSITION ID IS D_1200001940. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-MAR-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.918 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-225 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23276 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 40.290 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 84.3 REMARK 200 DATA REDUNDANCY : 3.000 REMARK 200 R MERGE (I) : 0.17900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 5.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.49 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.66100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1W30 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.79 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.08 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM BIS TRIS PH 5.5-6.5 20-25% REMARK 280 (W/V) PEG3350, MICROBATCH, TEMPERATURE 293.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 33.34500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3670 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16140 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -26.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3680 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16030 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -29.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: H, I REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A 1 REMARK 465 VAL A 2 REMARK 465 LYS A 3 REMARK 465 LEU A 4 REMARK 465 GLU A 5 REMARK 465 GLN A 6 REMARK 465 LEU A 7 REMARK 465 GLY A 8 REMARK 465 ILE A 9 REMARK 465 PRO A 10 REMARK 465 ARG A 11 REMARK 465 GLN A 12 REMARK 465 VAL A 13 REMARK 465 LEU A 14 REMARK 465 LYS A 15 REMARK 465 TYR A 16 REMARK 465 ASP A 17 REMARK 465 ASP A 18 REMARK 465 PHE A 19 REMARK 465 LEU A 20 REMARK 465 LYS A 21 REMARK 465 SER A 22 REMARK 465 THR A 23 REMARK 465 GLN A 24 REMARK 465 LYS A 25 REMARK 465 SER A 26 REMARK 465 PRO A 27 REMARK 465 ALA A 28 REMARK 465 THR A 29 REMARK 465 ALA A 30 REMARK 465 PRO A 31 REMARK 465 LYS A 32 REMARK 465 PRO A 33 REMARK 465 MET A 34 REMARK 465 PRO A 35 REMARK 465 PRO A 36 REMARK 465 ARG A 37 REMARK 465 PRO A 38 REMARK 465 PRO A 39 REMARK 465 LEU A 40 REMARK 465 PRO A 41 REMARK 465 ASN A 42 REMARK 465 PRO A 57 REMARK 465 GLU A 58 REMARK 465 GLN A 59 REMARK 465 GLU A 60 REMARK 465 PRO A 235 REMARK 465 SER A 236 REMARK 465 PRO A 237 REMARK 465 ASP A 238 REMARK 465 PRO A 239 REMARK 465 SER A 240 REMARK 465 ALA B 2 REMARK 465 ALA B 181 REMARK 465 ARG B 182 REMARK 465 ARG B 183 REMARK 465 GLY B 184 REMARK 465 LYS B 185 REMARK 465 LYS B 186 REMARK 465 LYS B 187 REMARK 465 SER B 188 REMARK 465 GLY B 189 REMARK 465 CYS B 190 REMARK 465 LEU B 191 REMARK 465 VAL B 192 REMARK 465 LEU B 193 REMARK 465 HIS H 1 REMARK 465 VAL H 2 REMARK 465 LYS H 3 REMARK 465 LEU H 4 REMARK 465 GLU H 5 REMARK 465 GLN H 6 REMARK 465 LEU H 7 REMARK 465 GLY H 8 REMARK 465 ILE H 9 REMARK 465 PRO H 10 REMARK 465 ARG H 11 REMARK 465 GLN H 12 REMARK 465 VAL H 13 REMARK 465 LEU H 14 REMARK 465 LYS H 15 REMARK 465 TYR H 16 REMARK 465 ASP H 17 REMARK 465 ASP H 18 REMARK 465 PHE H 19 REMARK 465 LEU H 20 REMARK 465 LYS H 21 REMARK 465 SER H 22 REMARK 465 THR H 23 REMARK 465 GLN H 24 REMARK 465 LYS H 25 REMARK 465 SER H 26 REMARK 465 PRO H 27 REMARK 465 ALA H 28 REMARK 465 THR H 29 REMARK 465 ALA H 30 REMARK 465 PRO H 31 REMARK 465 LYS H 32 REMARK 465 PRO H 33 REMARK 465 MET H 34 REMARK 465 PRO H 35 REMARK 465 PRO H 36 REMARK 465 ARG H 37 REMARK 465 PRO H 38 REMARK 465 PRO H 39 REMARK 465 LEU H 40 REMARK 465 PRO H 41 REMARK 465 ASN H 42 REMARK 465 ASN H 56 REMARK 465 PRO H 57 REMARK 465 GLU H 58 REMARK 465 GLN H 59 REMARK 465 GLU H 60 REMARK 465 PRO H 235 REMARK 465 SER H 236 REMARK 465 PRO H 237 REMARK 465 ASP H 238 REMARK 465 PRO H 239 REMARK 465 SER H 240 REMARK 465 ALA I 2 REMARK 465 ALA I 3 REMARK 465 ARG I 182 REMARK 465 ARG I 183 REMARK 465 GLY I 184 REMARK 465 LYS I 185 REMARK 465 LYS I 186 REMARK 465 LYS I 187 REMARK 465 SER I 188 REMARK 465 GLY I 189 REMARK 465 CYS I 190 REMARK 465 LEU I 191 REMARK 465 VAL I 192 REMARK 465 LEU I 193 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 84 -6.25 73.57 REMARK 500 THR A 134 149.75 80.74 REMARK 500 VAL B 38 -65.29 -98.24 REMARK 500 LYS B 98 -59.42 -134.39 REMARK 500 ASN B 109 -1.70 74.80 REMARK 500 HIS H 76 -47.30 -133.81 REMARK 500 PHE H 84 -8.66 74.96 REMARK 500 THR H 134 150.03 84.14 REMARK 500 HIS H 229 42.85 -108.85 REMARK 500 VAL I 38 -70.78 -94.43 REMARK 500 LYS I 98 -64.21 -139.65 REMARK 500 ASN I 109 -2.96 74.61 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 353 DISTANCE = 7.20 ANGSTROMS REMARK 525 HOH I 344 DISTANCE = 8.78 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 201 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR B 19 OG1 REMARK 620 2 THR B 37 OG1 76.1 REMARK 620 3 GDP B 202 O2B 90.7 166.7 REMARK 620 4 HOH B 301 O 77.7 81.1 98.1 REMARK 620 5 HOH B 306 O 94.3 89.6 89.5 168.9 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MGF B 203 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GDP B 202 O3B REMARK 620 2 MGF B 203 F1 98.9 REMARK 620 3 MGF B 203 F2 91.4 119.7 REMARK 620 4 MGF B 203 F3 87.5 119.7 119.9 REMARK 620 5 HOH B 309 O 176.9 84.2 86.6 91.5 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG I 201 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR I 19 OG1 REMARK 620 2 THR I 37 OG1 76.2 REMARK 620 3 GDP I 202 O1B 87.4 163.5 REMARK 620 4 HOH I 306 O 77.8 77.7 97.1 REMARK 620 5 HOH I 314 O 91.5 86.2 96.3 162.3 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MGF I 203 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GDP I 202 O3B REMARK 620 2 MGF I 203 F1 96.3 REMARK 620 3 MGF I 203 F2 85.3 120.6 REMARK 620 4 MGF I 203 F3 90.8 119.3 120.0 REMARK 620 5 HOH I 311 O 172.2 86.0 100.0 81.5 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GDP B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MGF B 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG I 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GDP I 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MGF I 203 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5C4M RELATED DB: PDB REMARK 900 5C4M SHOWS THE STRUCTURE OF ONE OF THE TWO PROTEINS, IN COMPLEX FOR REMARK 900 THIS ENTRY DBREF 5M6X A 1 240 UNP Q07960 RHG01_HUMAN 198 437 DBREF 5M6X B 2 193 UNP P61586 RHOA_HUMAN 2 193 DBREF 5M6X H 1 240 UNP Q07960 RHG01_HUMAN 198 437 DBREF 5M6X I 2 193 UNP P61586 RHOA_HUMAN 2 193 SEQADV 5M6X ALA A 85 UNP Q07960 ARG 282 ENGINEERED MUTATION SEQADV 5M6X ASN B 25 UNP P61586 PHE 25 CONFLICT SEQADV 5M6X ALA H 85 UNP Q07960 ARG 282 ENGINEERED MUTATION SEQADV 5M6X ASN I 25 UNP P61586 PHE 25 CONFLICT SEQRES 1 A 240 HIS VAL LYS LEU GLU GLN LEU GLY ILE PRO ARG GLN VAL SEQRES 2 A 240 LEU LYS TYR ASP ASP PHE LEU LYS SER THR GLN LYS SER SEQRES 3 A 240 PRO ALA THR ALA PRO LYS PRO MET PRO PRO ARG PRO PRO SEQRES 4 A 240 LEU PRO ASN GLN GLN PHE GLY VAL SER LEU GLN HIS LEU SEQRES 5 A 240 GLN GLU LYS ASN PRO GLU GLN GLU PRO ILE PRO ILE VAL SEQRES 6 A 240 LEU ARG GLU THR VAL ALA TYR LEU GLN ALA HIS ALA LEU SEQRES 7 A 240 THR THR GLU GLY ILE PHE ALA ARG SER ALA ASN THR GLN SEQRES 8 A 240 VAL VAL ARG GLU VAL GLN GLN LYS TYR ASN MET GLY LEU SEQRES 9 A 240 PRO VAL ASP PHE ASP GLN TYR ASN GLU LEU HIS LEU PRO SEQRES 10 A 240 ALA VAL ILE LEU LYS THR PHE LEU ARG GLU LEU PRO GLU SEQRES 11 A 240 PRO LEU LEU THR PHE ASP LEU TYR PRO HIS VAL VAL GLY SEQRES 12 A 240 PHE LEU ASN ILE ASP GLU SER GLN ARG VAL PRO ALA THR SEQRES 13 A 240 LEU GLN VAL LEU GLN THR LEU PRO GLU GLU ASN TYR GLN SEQRES 14 A 240 VAL LEU ARG PHE LEU THR ALA PHE LEU VAL GLN ILE SER SEQRES 15 A 240 ALA HIS SER ASP GLN ASN LYS MET THR ASN THR ASN LEU SEQRES 16 A 240 ALA VAL VAL PHE GLY PRO ASN LEU LEU TRP ALA LYS ASP SEQRES 17 A 240 ALA ALA ILE THR LEU LYS ALA ILE ASN PRO ILE ASN THR SEQRES 18 A 240 PHE THR LYS PHE LEU LEU ASP HIS GLN GLY GLU LEU PHE SEQRES 19 A 240 PRO SER PRO ASP PRO SER SEQRES 1 B 192 ALA ALA ILE ARG LYS LYS LEU VAL ILE VAL GLY ASP GLY SEQRES 2 B 192 ALA CYS GLY LYS THR CYS LEU LEU ILE VAL ASN SER LYS SEQRES 3 B 192 ASP GLN PHE PRO GLU VAL TYR VAL PRO THR VAL PHE GLU SEQRES 4 B 192 ASN TYR VAL ALA ASP ILE GLU VAL ASP GLY LYS GLN VAL SEQRES 5 B 192 GLU LEU ALA LEU TRP ASP THR ALA GLY GLN GLU ASP TYR SEQRES 6 B 192 ASP ARG LEU ARG PRO LEU SER TYR PRO ASP THR ASP VAL SEQRES 7 B 192 ILE LEU MET CYS PHE SER ILE ASP SER PRO ASP SER LEU SEQRES 8 B 192 GLU ASN ILE PRO GLU LYS TRP THR PRO GLU VAL LYS HIS SEQRES 9 B 192 PHE CYS PRO ASN VAL PRO ILE ILE LEU VAL GLY ASN LYS SEQRES 10 B 192 LYS ASP LEU ARG ASN ASP GLU HIS THR ARG ARG GLU LEU SEQRES 11 B 192 ALA LYS MET LYS GLN GLU PRO VAL LYS PRO GLU GLU GLY SEQRES 12 B 192 ARG ASP MET ALA ASN ARG ILE GLY ALA PHE GLY TYR MET SEQRES 13 B 192 GLU CYS SER ALA LYS THR LYS ASP GLY VAL ARG GLU VAL SEQRES 14 B 192 PHE GLU MET ALA THR ARG ALA ALA LEU GLN ALA ARG ARG SEQRES 15 B 192 GLY LYS LYS LYS SER GLY CYS LEU VAL LEU SEQRES 1 H 240 HIS VAL LYS LEU GLU GLN LEU GLY ILE PRO ARG GLN VAL SEQRES 2 H 240 LEU LYS TYR ASP ASP PHE LEU LYS SER THR GLN LYS SER SEQRES 3 H 240 PRO ALA THR ALA PRO LYS PRO MET PRO PRO ARG PRO PRO SEQRES 4 H 240 LEU PRO ASN GLN GLN PHE GLY VAL SER LEU GLN HIS LEU SEQRES 5 H 240 GLN GLU LYS ASN PRO GLU GLN GLU PRO ILE PRO ILE VAL SEQRES 6 H 240 LEU ARG GLU THR VAL ALA TYR LEU GLN ALA HIS ALA LEU SEQRES 7 H 240 THR THR GLU GLY ILE PHE ALA ARG SER ALA ASN THR GLN SEQRES 8 H 240 VAL VAL ARG GLU VAL GLN GLN LYS TYR ASN MET GLY LEU SEQRES 9 H 240 PRO VAL ASP PHE ASP GLN TYR ASN GLU LEU HIS LEU PRO SEQRES 10 H 240 ALA VAL ILE LEU LYS THR PHE LEU ARG GLU LEU PRO GLU SEQRES 11 H 240 PRO LEU LEU THR PHE ASP LEU TYR PRO HIS VAL VAL GLY SEQRES 12 H 240 PHE LEU ASN ILE ASP GLU SER GLN ARG VAL PRO ALA THR SEQRES 13 H 240 LEU GLN VAL LEU GLN THR LEU PRO GLU GLU ASN TYR GLN SEQRES 14 H 240 VAL LEU ARG PHE LEU THR ALA PHE LEU VAL GLN ILE SER SEQRES 15 H 240 ALA HIS SER ASP GLN ASN LYS MET THR ASN THR ASN LEU SEQRES 16 H 240 ALA VAL VAL PHE GLY PRO ASN LEU LEU TRP ALA LYS ASP SEQRES 17 H 240 ALA ALA ILE THR LEU LYS ALA ILE ASN PRO ILE ASN THR SEQRES 18 H 240 PHE THR LYS PHE LEU LEU ASP HIS GLN GLY GLU LEU PHE SEQRES 19 H 240 PRO SER PRO ASP PRO SER SEQRES 1 I 192 ALA ALA ILE ARG LYS LYS LEU VAL ILE VAL GLY ASP GLY SEQRES 2 I 192 ALA CYS GLY LYS THR CYS LEU LEU ILE VAL ASN SER LYS SEQRES 3 I 192 ASP GLN PHE PRO GLU VAL TYR VAL PRO THR VAL PHE GLU SEQRES 4 I 192 ASN TYR VAL ALA ASP ILE GLU VAL ASP GLY LYS GLN VAL SEQRES 5 I 192 GLU LEU ALA LEU TRP ASP THR ALA GLY GLN GLU ASP TYR SEQRES 6 I 192 ASP ARG LEU ARG PRO LEU SER TYR PRO ASP THR ASP VAL SEQRES 7 I 192 ILE LEU MET CYS PHE SER ILE ASP SER PRO ASP SER LEU SEQRES 8 I 192 GLU ASN ILE PRO GLU LYS TRP THR PRO GLU VAL LYS HIS SEQRES 9 I 192 PHE CYS PRO ASN VAL PRO ILE ILE LEU VAL GLY ASN LYS SEQRES 10 I 192 LYS ASP LEU ARG ASN ASP GLU HIS THR ARG ARG GLU LEU SEQRES 11 I 192 ALA LYS MET LYS GLN GLU PRO VAL LYS PRO GLU GLU GLY SEQRES 12 I 192 ARG ASP MET ALA ASN ARG ILE GLY ALA PHE GLY TYR MET SEQRES 13 I 192 GLU CYS SER ALA LYS THR LYS ASP GLY VAL ARG GLU VAL SEQRES 14 I 192 PHE GLU MET ALA THR ARG ALA ALA LEU GLN ALA ARG ARG SEQRES 15 I 192 GLY LYS LYS LYS SER GLY CYS LEU VAL LEU HET MG B 201 1 HET GDP B 202 28 HET MGF B 203 4 HET MG I 201 1 HET GDP I 202 28 HET MGF I 203 4 HETNAM MG MAGNESIUM ION HETNAM GDP GUANOSINE-5'-DIPHOSPHATE HETNAM MGF TRIFLUOROMAGNESATE FORMUL 5 MG 2(MG 2+) FORMUL 6 GDP 2(C10 H15 N5 O11 P2) FORMUL 7 MGF 2(F3 MG 1-) FORMUL 11 HOH *183(H2 O) HELIX 1 AA1 SER A 48 ASN A 56 1 9 HELIX 2 AA2 PRO A 63 ALA A 77 1 15 HELIX 3 AA3 ASN A 89 GLY A 103 1 15 HELIX 4 AA4 ASP A 107 TYR A 111 5 5 HELIX 5 AA5 LEU A 114 GLU A 127 1 14 HELIX 6 AA6 THR A 134 ASP A 136 5 3 HELIX 7 AA7 LEU A 137 GLY A 143 1 7 HELIX 8 AA8 PHE A 144 ILE A 147 5 4 HELIX 9 AA9 GLN A 151 THR A 162 1 12 HELIX 10 AB1 PRO A 164 HIS A 184 1 21 HELIX 11 AB2 HIS A 184 LYS A 189 1 6 HELIX 12 AB3 THR A 191 LEU A 204 1 14 HELIX 13 AB4 ASP A 208 ALA A 215 1 8 HELIX 14 AB5 ALA A 215 HIS A 229 1 15 HELIX 15 AB6 HIS A 229 PHE A 234 1 6 HELIX 16 AB7 GLY B 17 ASP B 28 1 12 HELIX 17 AB8 GLN B 63 ASP B 67 5 5 HELIX 18 AB9 LEU B 69 TYR B 74 5 6 HELIX 19 AC1 SER B 88 LYS B 98 1 11 HELIX 20 AC2 LYS B 98 CYS B 107 1 10 HELIX 21 AC3 LYS B 118 ASN B 123 5 6 HELIX 22 AC4 ASP B 124 MET B 134 1 11 HELIX 23 AC5 LYS B 140 GLY B 152 1 13 HELIX 24 AC6 GLY B 166 GLN B 180 1 15 HELIX 25 AC7 SER H 48 LYS H 55 1 8 HELIX 26 AC8 PRO H 63 ALA H 77 1 15 HELIX 27 AC9 ASN H 89 MET H 102 1 14 HELIX 28 AD1 ASP H 107 TYR H 111 5 5 HELIX 29 AD2 LEU H 114 LEU H 128 1 15 HELIX 30 AD3 THR H 134 ASP H 136 5 3 HELIX 31 AD4 LEU H 137 GLY H 143 1 7 HELIX 32 AD5 PHE H 144 ILE H 147 5 4 HELIX 33 AD6 GLN H 151 GLN H 161 1 11 HELIX 34 AD7 PRO H 164 ALA H 183 1 20 HELIX 35 AD8 HIS H 184 LYS H 189 1 6 HELIX 36 AD9 THR H 191 LEU H 204 1 14 HELIX 37 AE1 ASP H 208 ALA H 215 1 8 HELIX 38 AE2 ALA H 215 HIS H 229 1 15 HELIX 39 AE3 HIS H 229 PHE H 234 1 6 HELIX 40 AE4 GLY I 17 ASP I 28 1 12 HELIX 41 AE5 GLN I 63 ASP I 67 5 5 HELIX 42 AE6 LEU I 69 TYR I 74 5 6 HELIX 43 AE7 SER I 88 LYS I 98 1 11 HELIX 44 AE8 LYS I 98 CYS I 107 1 10 HELIX 45 AE9 LYS I 118 ARG I 122 5 5 HELIX 46 AF1 ASP I 124 LYS I 133 1 10 HELIX 47 AF2 LYS I 140 GLY I 152 1 13 HELIX 48 AF3 GLY I 166 LEU I 179 1 14 SHEET 1 AA1 6 PHE B 39 VAL B 48 0 SHEET 2 AA1 6 LYS B 51 THR B 60 -1 O LEU B 57 N TYR B 42 SHEET 3 AA1 6 ILE B 4 GLY B 12 1 N LEU B 8 O TRP B 58 SHEET 4 AA1 6 VAL B 79 SER B 85 1 O LEU B 81 N VAL B 11 SHEET 5 AA1 6 ILE B 112 ASN B 117 1 O VAL B 115 N MET B 82 SHEET 6 AA1 6 GLY B 155 GLU B 158 1 O MET B 157 N GLY B 116 SHEET 1 AA2 6 PHE I 39 GLU I 47 0 SHEET 2 AA2 6 GLN I 52 THR I 60 -1 O LEU I 57 N TYR I 42 SHEET 3 AA2 6 ARG I 5 GLY I 12 1 N LEU I 8 O ALA I 56 SHEET 4 AA2 6 VAL I 79 SER I 85 1 O CYS I 83 N VAL I 11 SHEET 5 AA2 6 ILE I 112 ASN I 117 1 O ASN I 117 N PHE I 84 SHEET 6 AA2 6 GLY I 155 GLU I 158 1 O GLY I 155 N LEU I 114 LINK OG1 THR B 19 MG MG B 201 1555 1555 2.08 LINK OG1 THR B 37 MG MG B 201 1555 1555 2.28 LINK MG MG B 201 O2B GDP B 202 1555 1555 2.06 LINK MG MG B 201 O HOH B 301 1555 1555 2.02 LINK MG MG B 201 O HOH B 306 1555 1555 2.06 LINK O3B GDP B 202 MG MGF B 203 1555 1555 2.17 LINK MG MGF B 203 O HOH B 309 1555 1555 1.94 LINK OG1 THR I 19 MG MG I 201 1555 1555 2.28 LINK OG1 THR I 37 MG MG I 201 1555 1555 2.28 LINK MG MG I 201 O1B GDP I 202 1555 1555 2.01 LINK MG MG I 201 O HOH I 306 1555 1555 2.07 LINK MG MG I 201 O HOH I 314 1555 1555 1.91 LINK O3B GDP I 202 MG MGF I 203 1555 1555 2.12 LINK MG MGF I 203 O HOH I 311 1555 1555 1.98 SITE 1 AC1 6 THR B 19 THR B 37 GDP B 202 MGF B 203 SITE 2 AC1 6 HOH B 301 HOH B 306 SITE 1 AC2 22 LYS A 189 HOH A 311 ALA B 15 CYS B 16 SITE 2 AC2 22 GLY B 17 LYS B 18 THR B 19 CYS B 20 SITE 3 AC2 22 PHE B 30 TYR B 34 LYS B 118 ASP B 120 SITE 4 AC2 22 LEU B 121 SER B 160 ALA B 161 LYS B 162 SITE 5 AC2 22 MG B 201 MGF B 203 HOH B 301 HOH B 306 SITE 6 AC2 22 HOH B 315 HOH B 316 SITE 1 AC3 12 GLY B 14 LYS B 18 TYR B 34 PRO B 36 SITE 2 AC3 12 THR B 37 GLY B 62 GLN B 63 MG B 201 SITE 3 AC3 12 GDP B 202 HOH B 301 HOH B 306 HOH B 309 SITE 1 AC4 6 THR I 19 THR I 37 GDP I 202 MGF I 203 SITE 2 AC4 6 HOH I 306 HOH I 314 SITE 1 AC5 22 LYS H 189 ALA I 15 CYS I 16 GLY I 17 SITE 2 AC5 22 LYS I 18 THR I 19 CYS I 20 PHE I 30 SITE 3 AC5 22 TYR I 34 LYS I 118 ASP I 120 LEU I 121 SITE 4 AC5 22 SER I 160 ALA I 161 LYS I 162 MG I 201 SITE 5 AC5 22 MGF I 203 HOH I 303 HOH I 306 HOH I 314 SITE 6 AC5 22 HOH I 316 HOH I 328 SITE 1 AC6 13 GLY I 14 ALA I 15 LYS I 18 TYR I 34 SITE 2 AC6 13 PRO I 36 THR I 37 GLY I 62 GLN I 63 SITE 3 AC6 13 MG I 201 GDP I 202 HOH I 306 HOH I 311 SITE 4 AC6 13 HOH I 314 CRYST1 73.470 66.690 76.890 90.00 95.41 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013611 0.000000 0.001289 0.00000 SCALE2 0.000000 0.014995 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013064 0.00000