HEADER HYDROLASE 28-OCT-16 5M7Y TITLE CRYSTAL STRUCTURE OF GH125 1,6-ALPHA-MANNOSIDASE MUTANT FROM TITLE 2 CLOSTRIDIUM PERFRINGENS IN COMPLEX WITH 1,6-ALPHA-MANNOTRIOSE COMPND MOL_ID: 1; COMPND 2 MOLECULE: 1,6-ALPHA-MANNOSIDASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CLOSTRIDIUM PERFRINGENS (STRAIN 13 / TYPE A); SOURCE 3 ORGANISM_TAXID: 195102; SOURCE 4 STRAIN: 13 / TYPE A; SOURCE 5 GENE: CPE0426; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET21A KEYWDS GLYCOSIDE HYDROLASE, MANNOSIDASE, CARBOHYDRATE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR A.MALES,S.ALONSO-GIL,P.FERNANDES,S.J.WILLIAMS,C.ROVIRA,G.J.DAVIES REVDAT 6 08-MAY-24 5M7Y 1 HETSYN LINK REVDAT 5 29-JUL-20 5M7Y 1 COMPND REMARK HETNAM LINK REVDAT 5 2 1 SITE ATOM REVDAT 4 30-AUG-17 5M7Y 1 REMARK REVDAT 3 08-FEB-17 5M7Y 1 JRNL REVDAT 2 11-JAN-17 5M7Y 1 JRNL REVDAT 1 30-NOV-16 5M7Y 0 JRNL AUTH S.ALONSO-GIL,A.MALES,P.Z.FERNANDES,S.J.WILLIAMS,G.J.DAVIES, JRNL AUTH 2 C.ROVIRA JRNL TITL COMPUTATIONAL DESIGN OF EXPERIMENT UNVEILS THE JRNL TITL 2 CONFORMATIONAL REACTION COORDINATE OF GH125 JRNL TITL 3 ALPHA-MANNOSIDASES. JRNL REF J. AM. CHEM. SOC. V. 139 1085 2017 JRNL REFN ESSN 1520-5126 JRNL PMID 28026180 JRNL DOI 10.1021/JACS.6B11247 REMARK 2 REMARK 2 RESOLUTION. 1.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0155 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 51.82 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 64689 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.149 REMARK 3 R VALUE (WORKING SET) : 0.147 REMARK 3 FREE R VALUE : 0.180 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3291 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.55 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.59 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4528 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.62 REMARK 3 BIN R VALUE (WORKING SET) : 0.2310 REMARK 3 BIN FREE R VALUE SET COUNT : 227 REMARK 3 BIN FREE R VALUE : 0.2600 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3479 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 36 REMARK 3 SOLVENT ATOMS : 293 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.90 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.47000 REMARK 3 B22 (A**2) : -0.73000 REMARK 3 B33 (A**2) : -1.65000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.19000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.068 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.072 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.976 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.965 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3719 ; 0.021 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3398 ; 0.000 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5065 ; 2.067 ; 1.952 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7888 ; 3.650 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 456 ; 6.345 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 193 ;37.908 ;24.922 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 648 ;12.732 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 15 ;17.234 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 542 ; 0.128 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4210 ; 0.012 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 873 ; 0.026 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1736 ; 1.836 ; 2.055 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1735 ; 1.836 ; 2.053 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2178 ; 2.432 ; 3.074 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 5M7Y COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 28-OCT-16. REMARK 100 THE DEPOSITION ID IS D_1200002063. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-SEP-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.980 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 263043 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.550 REMARK 200 RESOLUTION RANGE LOW (A) : 51.820 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 4.100 REMARK 200 R MERGE (I) : 0.03500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 21.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.58 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 3.60 REMARK 200 R MERGE FOR SHELL (I) : 0.40000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.40 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 200 MM MGCL2, 100 MM HEPES PH7.0, 27% REMARK 280 POLYETHYLENE GLYCOL 3350, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 22.00800 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1170 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15820 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 8.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 LYS A 427 REMARK 465 LEU A 428 REMARK 465 GLU A 429 REMARK 465 HIS A 430 REMARK 465 HIS A 431 REMARK 465 HIS A 432 REMARK 465 HIS A 433 REMARK 465 HIS A 434 REMARK 465 HIS A 435 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 2 CB OG REMARK 470 LYS A 26 CD CE NZ REMARK 470 LYS A 163 CD CE NZ REMARK 470 LYS A 332 CD CE NZ REMARK 470 LYS A 341 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 830 O HOH A 857 1.97 REMARK 500 OD1 ASP A 117 O HOH A 602 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ASP A 159 CB ASP A 159 CG 0.144 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 13 NE - CZ - NH1 ANGL. DEV. = 5.4 DEGREES REMARK 500 ARG A 13 NE - CZ - NH2 ANGL. DEV. = -3.9 DEGREES REMARK 500 ASP A 25 CB - CG - OD1 ANGL. DEV. = 8.0 DEGREES REMARK 500 ARG A 64 NE - CZ - NH1 ANGL. DEV. = -3.6 DEGREES REMARK 500 TYR A 103 CB - CG - CD2 ANGL. DEV. = 3.8 DEGREES REMARK 500 ASP A 153 CB - CG - OD2 ANGL. DEV. = -6.1 DEGREES REMARK 500 ASP A 159 CB - CG - OD1 ANGL. DEV. = 11.8 DEGREES REMARK 500 ASP A 290 CB - CG - OD2 ANGL. DEV. = -6.8 DEGREES REMARK 500 ASP A 319 CB - CG - OD2 ANGL. DEV. = 6.3 DEGREES REMARK 500 ARG A 326 NE - CZ - NH1 ANGL. DEV. = 4.2 DEGREES REMARK 500 ARG A 326 NE - CZ - NH2 ANGL. DEV. = -4.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 101 104.94 -163.52 REMARK 500 SER A 198 -179.60 -68.35 REMARK 500 MET A 298 -179.05 -177.00 REMARK 500 LEU A 330 40.59 -101.34 REMARK 500 HIS A 392 -169.36 -120.85 REMARK 500 GLU A 393 -82.37 -86.84 REMARK 500 ASP A 399 98.21 -168.83 REMARK 500 ARG A 405 95.73 63.21 REMARK 500 VAL A 423 -61.43 -120.61 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 504 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY A 152 O REMARK 620 2 HOH A 628 O 93.3 REMARK 620 3 HOH A 704 O 85.8 177.4 REMARK 620 4 HOH A 844 O 86.7 89.9 87.7 REMARK 620 5 HOH A 853 O 101.8 93.5 89.0 170.7 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 505 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 610 O REMARK 620 2 HOH A 612 O 81.0 REMARK 620 3 HOH A 621 O 98.9 95.4 REMARK 620 4 HOH A 888 O 82.5 158.8 100.2 REMARK 620 5 HOH A 890 O 161.8 103.4 98.3 88.5 REMARK 620 6 HOH A 892 O 77.7 88.3 174.6 75.2 84.6 REMARK 620 N 1 2 3 4 5 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5M7I RELATED DB: PDB REMARK 900 5M7I CONTAINS THE SAME PROTEIN BUT COMPLEXED WITH 1,6-ALPHA- REMARK 900 MANNOBIOSE DBREF 5M7Y A 1 427 UNP Q8XNB2 Q8XNB2_CLOPE 1 427 SEQADV 5M7Y ASN A 220 UNP Q8XNB2 ASP 220 ENGINEERED MUTATION SEQADV 5M7Y LEU A 428 UNP Q8XNB2 EXPRESSION TAG SEQADV 5M7Y GLU A 429 UNP Q8XNB2 EXPRESSION TAG SEQADV 5M7Y HIS A 430 UNP Q8XNB2 EXPRESSION TAG SEQADV 5M7Y HIS A 431 UNP Q8XNB2 EXPRESSION TAG SEQADV 5M7Y HIS A 432 UNP Q8XNB2 EXPRESSION TAG SEQADV 5M7Y HIS A 433 UNP Q8XNB2 EXPRESSION TAG SEQADV 5M7Y HIS A 434 UNP Q8XNB2 EXPRESSION TAG SEQADV 5M7Y HIS A 435 UNP Q8XNB2 EXPRESSION TAG SEQRES 1 A 435 MET SER LEU SER THR ASN GLU LEU LYS GLU ILE VAL ARG SEQRES 2 A 435 LYS ILE GLY LYS ASP LEU SER GLY LYS ILE GLU ASP LYS SEQRES 3 A 435 LYS LEU GLN GLU LEU PHE TYR ASN CYS PHE ILE ASN THR SEQRES 4 A 435 MET ASP THR THR VAL GLU VAL SER GLU GLY ASP ALA PHE SEQRES 5 A 435 VAL ILE THR GLY ASP ILE PRO ALA MET TRP LEU ARG ASP SEQRES 6 A 435 SER THR SER GLN VAL GLU HIS TYR LEU PRO PHE VAL LYS SEQRES 7 A 435 GLU TYR PRO GLU LEU LYS ALA ILE PHE THR GLY LEU ILE SEQRES 8 A 435 ASN ARG GLN VAL LYS CYS ILE PHE ILE ASP PRO TYR ALA SEQRES 9 A 435 ASN ALA PHE ASN LYS GLU PRO ASN GLY GLN LYS TRP ASP SEQRES 10 A 435 ASN ASP ILE THR LYS ASP SER PRO TRP VAL TRP GLU ARG SEQRES 11 A 435 LYS TYR GLU ILE ASP SER LEU CYS TYR PRO VAL ARG LEU SEQRES 12 A 435 ILE HIS LYS TYR TRP LYS GLU SER GLY ASP GLU THR PHE SEQRES 13 A 435 PHE ASN ASP ASP ILE LYS LYS ALA PHE ASN MET ILE ILE SEQRES 14 A 435 ASP LEU TRP ARG VAL GLU GLN TYR HIS ARG GLU LYS SER SEQRES 15 A 435 ASP TYR SER PHE GLN ARG LEU ASN CYS SER VAL THR ASP SEQRES 16 A 435 THR LEU SER HIS GLU GLY LEU GLY THR PRO VAL THR TYR SEQRES 17 A 435 THR GLY MET THR TRP SER GLY PHE ARG PRO SER ASN ASP SEQRES 18 A 435 ALA CYS GLU TYR GLY TYR LEU ILE PRO ALA ASN MET PHE SEQRES 19 A 435 ALA VAL VAL ALA LEU ARG TYR ILE SER GLU ILE ALA GLU SEQRES 20 A 435 LYS VAL TYR LYS ASP GLU GLU LEU LYS GLU LYS ALA ASP SEQRES 21 A 435 SER LEU ARG GLU GLU ILE ASP ASN ALA ILE GLU LYS HIS SEQRES 22 A 435 GLY LYS VAL TYR LYS GLU GLY PHE GLY GLU VAL TYR ALA SEQRES 23 A 435 TYR GLU THR ASP GLY MET GLY ASN TYR ASN PHE MET ASP SEQRES 24 A 435 ASP ALA ASN VAL PRO SER LEU LEU SER ILE PRO TYR LEU SEQRES 25 A 435 GLU TYR LYS GLY ILE GLU ASP GLU VAL TYR GLN ASN THR SEQRES 26 A 435 ARG LYS PHE ILE LEU SER LYS ASN ASN ARG PHE PHE PHE SEQRES 27 A 435 GLU GLY LYS ALA ALA LYS GLY ILE GLY SER PRO HIS THR SEQRES 28 A 435 PRO ASP GLN TYR ILE TRP HIS ILE ALA LEU SER MET GLN SEQRES 29 A 435 GLY LEU THR THR ASN ASN GLN GLU GLU ILE ASP GLN LEU SEQRES 30 A 435 ILE LYS LEU LEU LYS GLU THR ASP ALA GLY THR GLY TYR SEQRES 31 A 435 MET HIS GLU GLY PHE HIS VAL ASP ASP PRO THR LYS PHE SEQRES 32 A 435 THR ARG ASP TRP PHE ALA TRP SER ASN SER LEU PHE SER SEQRES 33 A 435 HIS PHE ILE TYR GLU LYS VAL ILE ASN LYS LYS LEU GLU SEQRES 34 A 435 HIS HIS HIS HIS HIS HIS HET MAN B 1 12 HET MAN B 2 11 HET MAN B 3 11 HET MG A 504 1 HET MG A 505 1 HETNAM MAN ALPHA-D-MANNOPYRANOSE HETNAM MG MAGNESIUM ION HETSYN MAN ALPHA-D-MANNOSE; D-MANNOSE; MANNOSE FORMUL 2 MAN 3(C6 H12 O6) FORMUL 3 MG 2(MG 2+) FORMUL 5 HOH *293(H2 O) HELIX 1 AA1 SER A 4 GLY A 21 1 18 HELIX 2 AA2 ASP A 25 THR A 43 1 19 HELIX 3 AA3 LEU A 63 VAL A 70 1 8 HELIX 4 AA4 GLU A 71 VAL A 77 5 7 HELIX 5 AA5 TYR A 80 GLU A 82 5 3 HELIX 6 AA6 LEU A 83 ASP A 101 1 19 HELIX 7 AA7 GLU A 133 GLY A 152 1 20 HELIX 8 AA8 ASN A 158 GLU A 175 1 18 HELIX 9 AA9 TYR A 177 SER A 182 1 6 HELIX 10 AB1 SER A 192 THR A 196 5 5 HELIX 11 AB2 LEU A 197 LEU A 202 1 6 HELIX 12 AB3 ILE A 229 VAL A 249 1 21 HELIX 13 AB4 ASP A 252 GLY A 274 1 23 HELIX 14 AB5 SER A 308 GLU A 313 1 6 HELIX 15 AB6 ASP A 319 LEU A 330 1 12 HELIX 16 AB7 HIS A 358 THR A 367 1 10 HELIX 17 AB8 ASN A 370 THR A 384 1 15 HELIX 18 AB9 PHE A 408 VAL A 423 1 16 SHEET 1 AA1 2 VAL A 44 SER A 47 0 SHEET 2 AA1 2 ASP A 50 VAL A 53 -1 O ASP A 50 N SER A 47 SHEET 1 AA2 3 MET A 61 TRP A 62 0 SHEET 2 AA2 3 ALA A 106 PHE A 107 -1 O PHE A 107 N MET A 61 SHEET 3 AA2 3 VAL A 127 GLU A 129 -1 O GLU A 129 N ALA A 106 SHEET 1 AA3 3 TYR A 227 LEU A 228 0 SHEET 2 AA3 3 GLU A 288 THR A 289 -1 O THR A 289 N TYR A 227 SHEET 3 AA3 3 TYR A 295 ASN A 296 -1 O ASN A 296 N GLU A 288 SHEET 1 AA4 2 LYS A 275 LYS A 278 0 SHEET 2 AA4 2 GLY A 282 TYR A 285 -1 O GLY A 282 N LYS A 278 SHEET 1 AA5 2 PHE A 337 GLU A 339 0 SHEET 2 AA5 2 LYS A 344 ILE A 346 -1 O GLY A 345 N PHE A 338 SHEET 1 AA6 3 TYR A 355 TRP A 357 0 SHEET 2 AA6 3 GLY A 394 HIS A 396 -1 O PHE A 395 N ILE A 356 SHEET 3 AA6 3 ASP A 399 PHE A 403 -1 O LYS A 402 N HIS A 396 LINK O6 MAN B 1 C1 MAN B 2 1555 1555 1.43 LINK O6 MAN B 2 C1 MAN B 3 1555 1555 1.43 LINK O GLY A 152 MG MG A 504 1555 1555 2.35 LINK MG MG A 504 O HOH A 628 1555 1555 2.02 LINK MG MG A 504 O HOH A 704 1555 2544 2.17 LINK MG MG A 504 O HOH A 844 1555 1555 2.16 LINK MG MG A 504 O HOH A 853 1555 1555 1.90 LINK MG MG A 505 O HOH A 610 1555 1555 2.09 LINK MG MG A 505 O HOH A 612 1555 2555 2.11 LINK MG MG A 505 O HOH A 621 1555 2555 1.87 LINK MG MG A 505 O HOH A 888 1555 1555 2.20 LINK MG MG A 505 O HOH A 890 1555 2555 1.92 LINK MG MG A 505 O HOH A 892 1555 1555 2.10 CISPEP 1 VAL A 303 PRO A 304 0 18.83 CRYST1 60.414 44.016 85.079 90.00 96.59 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016552 0.000000 0.001913 0.00000 SCALE2 0.000000 0.022719 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011832 0.00000