HEADER RNA BINDING PROTEIN 28-OCT-16 5M83 TITLE TRANSLATION INITIATION FACTOR 4E IN COMPLEX WITH (RP)-M2(7,2'O)GPPSPA TITLE 2 MRNA 5' CAP ANALOG COMPND MOL_ID: 1; COMPND 2 MOLECULE: EUKARYOTIC TRANSLATION INITIATION FACTOR 4E; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: MRNA CAP-BINDING PROTEIN,EIF-4F 25 KDA SUBUNIT; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: EIF4E; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PROTEIN-LIGAND COMPLEX, TRANSLATION INITIATION FACTOR, EIF4E, M2(7, KEYWDS 2 2'O)GPPSPA, PHOSPHOROTHIOATE, MRNA 5' CAP ANALOG, TRANSLATION, RNA KEYWDS 3 BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.WARMINSKI,E.NOWAK,J.KOWALSKA,J.JEMIELITY,M.NOWOTNY REVDAT 2 17-JAN-24 5M83 1 ATOM REVDAT 1 20-DEC-17 5M83 0 JRNL AUTH M.WARMINSKI,E.NOWAK,D.KUBACKA,J.KOWALSKA,M.NOWOTNY, JRNL AUTH 2 J.JEMIELITY JRNL TITL TRANSLATION INITIATION FACTOR 4E IN COMPLEX WITH JRNL TITL 2 (RP)-M2(7,2'O)GPPSPA MRNA 5' CAP ANALOG JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.86 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10_2155: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.86 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.07 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 34740 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.207 REMARK 3 R VALUE (WORKING SET) : 0.206 REMARK 3 FREE R VALUE : 0.251 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.350 REMARK 3 FREE R VALUE TEST SET COUNT : 817 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 37.0758 - 3.3756 1.00 5768 140 0.1785 0.2089 REMARK 3 2 3.3756 - 2.6796 1.00 5682 137 0.2053 0.2484 REMARK 3 3 2.6796 - 2.3409 1.00 5651 136 0.2230 0.3093 REMARK 3 4 2.3409 - 2.1269 1.00 5597 135 0.2268 0.2997 REMARK 3 5 2.1269 - 1.9745 1.00 5642 136 0.2501 0.2925 REMARK 3 6 1.9745 - 1.8581 0.99 5583 133 0.2978 0.3463 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.270 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.010 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 2894 REMARK 3 ANGLE : 0.969 3960 REMARK 3 CHIRALITY : 0.057 421 REMARK 3 PLANARITY : 0.005 497 REMARK 3 DIHEDRAL : 15.316 1662 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 15 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 31 THROUGH 42 ) REMARK 3 ORIGIN FOR THE GROUP (A): -89.6393 -13.9313 45.1380 REMARK 3 T TENSOR REMARK 3 T11: 0.4036 T22: 0.2227 REMARK 3 T33: 0.5823 T12: -0.0126 REMARK 3 T13: -0.0096 T23: -0.0792 REMARK 3 L TENSOR REMARK 3 L11: 5.3395 L22: 3.3920 REMARK 3 L33: 4.7686 L12: 4.2019 REMARK 3 L13: 2.2673 L23: 2.3481 REMARK 3 S TENSOR REMARK 3 S11: -0.2733 S12: 0.4547 S13: -0.7290 REMARK 3 S21: -0.0165 S22: 0.4328 S23: -0.5513 REMARK 3 S31: 0.9573 S32: 0.3106 S33: -0.1937 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 43 THROUGH 66 ) REMARK 3 ORIGIN FOR THE GROUP (A):-100.1347 10.2327 49.6310 REMARK 3 T TENSOR REMARK 3 T11: 0.2173 T22: 0.2434 REMARK 3 T33: 0.3562 T12: -0.0403 REMARK 3 T13: -0.0594 T23: -0.0406 REMARK 3 L TENSOR REMARK 3 L11: 5.9246 L22: 8.8493 REMARK 3 L33: 0.4962 L12: -7.0015 REMARK 3 L13: -1.3782 L23: 1.3906 REMARK 3 S TENSOR REMARK 3 S11: 0.2147 S12: 0.3581 S13: 0.0405 REMARK 3 S21: -0.3082 S22: -0.3552 S23: 0.4710 REMARK 3 S31: -0.0740 S32: -0.1163 S33: 0.1552 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 67 THROUGH 95 ) REMARK 3 ORIGIN FOR THE GROUP (A): -89.6126 5.2642 45.9938 REMARK 3 T TENSOR REMARK 3 T11: 0.1811 T22: 0.2058 REMARK 3 T33: 0.2401 T12: -0.0444 REMARK 3 T13: -0.0865 T23: -0.0512 REMARK 3 L TENSOR REMARK 3 L11: 2.7541 L22: 3.1376 REMARK 3 L33: 2.3412 L12: -0.2565 REMARK 3 L13: -1.9967 L23: -0.7474 REMARK 3 S TENSOR REMARK 3 S11: -0.0144 S12: 0.1338 S13: -0.0674 REMARK 3 S21: -0.1978 S22: -0.0799 S23: -0.0660 REMARK 3 S31: -0.1543 S32: -0.0024 S33: 0.0870 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 96 THROUGH 110 ) REMARK 3 ORIGIN FOR THE GROUP (A):-102.4357 2.9330 61.7696 REMARK 3 T TENSOR REMARK 3 T11: 0.2717 T22: 0.4028 REMARK 3 T33: 0.2621 T12: -0.0556 REMARK 3 T13: 0.0308 T23: -0.0282 REMARK 3 L TENSOR REMARK 3 L11: 8.1285 L22: 6.1554 REMARK 3 L33: 7.5919 L12: -2.8231 REMARK 3 L13: -2.4212 L23: 4.1837 REMARK 3 S TENSOR REMARK 3 S11: -0.1460 S12: -0.5540 S13: -0.0821 REMARK 3 S21: 0.5652 S22: -0.3350 S23: 0.8488 REMARK 3 S31: 0.4616 S32: -1.0457 S33: 0.4440 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 111 THROUGH 125 ) REMARK 3 ORIGIN FOR THE GROUP (A): -82.0549 13.9029 58.8260 REMARK 3 T TENSOR REMARK 3 T11: 0.4084 T22: 0.4897 REMARK 3 T33: 0.4350 T12: -0.1534 REMARK 3 T13: -0.1647 T23: -0.0572 REMARK 3 L TENSOR REMARK 3 L11: 0.7510 L22: 1.6585 REMARK 3 L33: 4.0312 L12: -0.7928 REMARK 3 L13: -0.7827 L23: -0.7890 REMARK 3 S TENSOR REMARK 3 S11: 0.1299 S12: -0.6122 S13: 0.4596 REMARK 3 S21: 0.4040 S22: -0.4499 S23: -0.5425 REMARK 3 S31: -0.6791 S32: 0.4146 S33: 0.2583 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 126 THROUGH 155 ) REMARK 3 ORIGIN FOR THE GROUP (A): -86.5398 -0.0384 57.3615 REMARK 3 T TENSOR REMARK 3 T11: 0.1716 T22: 0.2618 REMARK 3 T33: 0.3261 T12: -0.0474 REMARK 3 T13: -0.0992 T23: 0.0537 REMARK 3 L TENSOR REMARK 3 L11: 4.2773 L22: 2.4446 REMARK 3 L33: 3.9904 L12: -0.4334 REMARK 3 L13: -1.3060 L23: 1.4818 REMARK 3 S TENSOR REMARK 3 S11: 0.0127 S12: -0.4930 S13: -0.5257 REMARK 3 S21: 0.2882 S22: -0.1661 S23: -0.3735 REMARK 3 S31: 0.2444 S32: 0.2195 S33: 0.1743 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 156 THROUGH 217 ) REMARK 3 ORIGIN FOR THE GROUP (A): -87.3764 5.8738 66.7584 REMARK 3 T TENSOR REMARK 3 T11: 0.3600 T22: 0.5890 REMARK 3 T33: 0.2799 T12: -0.1135 REMARK 3 T13: -0.1436 T23: 0.0261 REMARK 3 L TENSOR REMARK 3 L11: 2.0789 L22: 1.3161 REMARK 3 L33: 2.3553 L12: -0.7799 REMARK 3 L13: 1.0855 L23: -1.1201 REMARK 3 S TENSOR REMARK 3 S11: 0.1225 S12: -1.0071 S13: -0.0146 REMARK 3 S21: 0.5291 S22: -0.0812 S23: -0.2206 REMARK 3 S31: -0.2446 S32: 0.0006 S33: -0.0232 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 31 THROUGH 42 ) REMARK 3 ORIGIN FOR THE GROUP (A): -89.5687 9.9600 33.7884 REMARK 3 T TENSOR REMARK 3 T11: 0.3914 T22: 0.4753 REMARK 3 T33: 0.2857 T12: -0.2486 REMARK 3 T13: -0.1013 T23: -0.0142 REMARK 3 L TENSOR REMARK 3 L11: 8.3277 L22: 7.5393 REMARK 3 L33: 8.9248 L12: 1.4787 REMARK 3 L13: -6.1431 L23: -0.8846 REMARK 3 S TENSOR REMARK 3 S11: 0.3973 S12: 0.5059 S13: -0.0413 REMARK 3 S21: -0.3873 S22: 0.1371 S23: 0.1867 REMARK 3 S31: -0.4991 S32: -0.7102 S33: -0.5115 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 43 THROUGH 66 ) REMARK 3 ORIGIN FOR THE GROUP (A): -64.1608 4.7951 28.3041 REMARK 3 T TENSOR REMARK 3 T11: 0.7023 T22: 0.5574 REMARK 3 T33: 1.0323 T12: -0.2135 REMARK 3 T13: 0.3018 T23: -0.3760 REMARK 3 L TENSOR REMARK 3 L11: 2.5998 L22: 4.4484 REMARK 3 L33: 3.1976 L12: 1.0505 REMARK 3 L13: -0.6573 L23: -1.2272 REMARK 3 S TENSOR REMARK 3 S11: -0.2704 S12: 0.2754 S13: -0.7970 REMARK 3 S21: -0.5676 S22: 0.2173 S23: -1.6157 REMARK 3 S31: 0.4179 S32: 0.5605 S33: -0.0904 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 67 THROUGH 88 ) REMARK 3 ORIGIN FOR THE GROUP (A): -71.3438 15.4838 33.9027 REMARK 3 T TENSOR REMARK 3 T11: 0.4905 T22: 0.4096 REMARK 3 T33: 0.5138 T12: -0.1991 REMARK 3 T13: 0.1071 T23: -0.2025 REMARK 3 L TENSOR REMARK 3 L11: 2.0179 L22: 1.8216 REMARK 3 L33: 1.8547 L12: 1.2876 REMARK 3 L13: -0.7003 L23: -0.0911 REMARK 3 S TENSOR REMARK 3 S11: -0.1832 S12: 0.3184 S13: -0.3329 REMARK 3 S21: -0.4107 S22: 0.4749 S23: -0.8157 REMARK 3 S31: -0.0729 S32: 0.3680 S33: -0.2836 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 89 THROUGH 104 ) REMARK 3 ORIGIN FOR THE GROUP (A): -68.7098 4.7169 22.0614 REMARK 3 T TENSOR REMARK 3 T11: 0.8180 T22: 0.5334 REMARK 3 T33: 0.8464 T12: -0.3944 REMARK 3 T13: 0.3849 T23: -0.4165 REMARK 3 L TENSOR REMARK 3 L11: 0.5501 L22: 1.7187 REMARK 3 L33: 1.5266 L12: 0.6942 REMARK 3 L13: 0.3359 L23: 1.3006 REMARK 3 S TENSOR REMARK 3 S11: -0.1736 S12: 0.3939 S13: -0.5512 REMARK 3 S21: -0.4629 S22: 0.3731 S23: -0.6994 REMARK 3 S31: 0.1708 S32: 0.2731 S33: -0.2082 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 105 THROUGH 125 ) REMARK 3 ORIGIN FOR THE GROUP (A): -65.4794 18.6873 17.4559 REMARK 3 T TENSOR REMARK 3 T11: 1.1124 T22: 0.8379 REMARK 3 T33: 0.6190 T12: -0.5774 REMARK 3 T13: 0.3596 T23: -0.3425 REMARK 3 L TENSOR REMARK 3 L11: 0.1426 L22: 0.0021 REMARK 3 L33: 0.5064 L12: 0.0187 REMARK 3 L13: 0.2649 L23: 0.0347 REMARK 3 S TENSOR REMARK 3 S11: -0.4281 S12: 0.4314 S13: -0.1741 REMARK 3 S21: -0.6134 S22: 0.4097 S23: -0.2809 REMARK 3 S31: -0.0790 S32: 0.1993 S33: -0.2106 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 126 THROUGH 142 ) REMARK 3 ORIGIN FOR THE GROUP (A): -75.6136 18.8193 23.3114 REMARK 3 T TENSOR REMARK 3 T11: 0.7630 T22: 0.5198 REMARK 3 T33: 0.3094 T12: -0.3143 REMARK 3 T13: 0.1057 T23: -0.0835 REMARK 3 L TENSOR REMARK 3 L11: 5.8823 L22: 3.7640 REMARK 3 L33: 7.2235 L12: 0.4386 REMARK 3 L13: -1.2219 L23: -0.1769 REMARK 3 S TENSOR REMARK 3 S11: -0.1835 S12: 0.4029 S13: 0.2619 REMARK 3 S21: -0.9445 S22: 0.4610 S23: 0.0780 REMARK 3 S31: -0.2395 S32: -0.5934 S33: -0.2287 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 143 THROUGH 172 ) REMARK 3 ORIGIN FOR THE GROUP (A): -70.6912 12.1540 16.3180 REMARK 3 T TENSOR REMARK 3 T11: 1.0273 T22: 0.8075 REMARK 3 T33: 0.6403 T12: -0.5627 REMARK 3 T13: 0.3792 T23: -0.3419 REMARK 3 L TENSOR REMARK 3 L11: 3.1345 L22: 2.2070 REMARK 3 L33: 1.0690 L12: 1.2793 REMARK 3 L13: 0.5688 L23: 1.0828 REMARK 3 S TENSOR REMARK 3 S11: -0.3321 S12: 0.4486 S13: -0.0821 REMARK 3 S21: -0.6943 S22: 0.3250 S23: -0.1018 REMARK 3 S31: 0.1422 S32: -0.1263 S33: 0.2089 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 173 THROUGH 203 ) REMARK 3 ORIGIN FOR THE GROUP (A): -72.8215 17.9314 10.4643 REMARK 3 T TENSOR REMARK 3 T11: 1.4114 T22: 0.8068 REMARK 3 T33: 0.3920 T12: -0.4362 REMARK 3 T13: 0.1467 T23: -0.0989 REMARK 3 L TENSOR REMARK 3 L11: 4.2522 L22: 4.9748 REMARK 3 L33: 2.9794 L12: -3.4498 REMARK 3 L13: -0.0432 L23: 1.2434 REMARK 3 S TENSOR REMARK 3 S11: -0.0818 S12: 0.9418 S13: -0.2086 REMARK 3 S21: -0.9734 S22: -0.1293 S23: -0.1793 REMARK 3 S31: -0.0772 S32: -0.0882 S33: 0.1384 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5M83 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 14-NOV-16. REMARK 100 THE DEPOSITION ID IS D_1200001926. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-JUL-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.918 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 34747 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.860 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 6.436 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.5700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.86 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.91 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.1 REMARK 200 DATA REDUNDANCY IN SHELL : 6.45 REMARK 200 R MERGE FOR SHELL (I) : 0.90900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.020 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1L8B REMARK 200 REMARK 200 REMARK: THIN PLATE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.73 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.35 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 16% PEG 10000, 0.2M CH3COONA, 0.1M REMARK 280 TRIS PH 8.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 23.53000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 29.87000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 23.53000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 29.87000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 462 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 488 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 VAL A 28 REMARK 465 ALA A 29 REMARK 465 ASN A 30 REMARK 465 LYS A 206 REMARK 465 SER A 207 REMARK 465 GLY A 208 REMARK 465 SER A 209 REMARK 465 THR A 210 REMARK 465 THR A 211 REMARK 465 VAL B 28 REMARK 465 ALA B 29 REMARK 465 ASN B 30 REMARK 465 PRO B 190 REMARK 465 PRO B 191 REMARK 465 ALA B 204 REMARK 465 THR B 205 REMARK 465 LYS B 206 REMARK 465 SER B 207 REMARK 465 GLY B 208 REMARK 465 SER B 209 REMARK 465 THR B 210 REMARK 465 THR B 211 REMARK 465 LYS B 212 REMARK 465 ASN B 213 REMARK 465 ARG B 214 REMARK 465 PHE B 215 REMARK 465 VAL B 216 REMARK 465 VAL B 217 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 32 CG CD OE1 OE2 REMARK 470 HIS A 33 CG ND1 CD2 CE1 NE2 REMARK 470 GLN A 57 CD OE1 NE2 REMARK 470 LYS A 106 CE NZ REMARK 470 LYS A 159 CG CD CE NZ REMARK 470 ARG A 173 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 185 CG CD OE1 OE2 REMARK 470 LYS A 192 CD CE NZ REMARK 470 ILE A 193 CG1 CG2 CD1 REMARK 470 VAL A 194 CG1 CG2 REMARK 470 LYS A 212 CG CD CE NZ REMARK 470 PHE A 215 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLU B 32 CG CD OE1 OE2 REMARK 470 ILE B 35 CD1 REMARK 470 LYS B 49 CG CD CE NZ REMARK 470 ASN B 50 CG OD1 ND2 REMARK 470 LYS B 52 CG CD CE NZ REMARK 470 SER B 53 OG REMARK 470 LYS B 54 CG CD CE NZ REMARK 470 THR B 55 OG1 CG2 REMARK 470 GLN B 57 CG CD OE1 NE2 REMARK 470 LEU B 60 CD1 CD2 REMARK 470 ARG B 61 CG CD NE CZ NH1 NH2 REMARK 470 ILE B 63 CG1 CG2 CD1 REMARK 470 ASP B 90 CG OD1 OD2 REMARK 470 GLU B 105 CG CD OE1 OE2 REMARK 470 LYS B 106 CG CD CE NZ REMARK 470 LYS B 108 CG CD CE NZ REMARK 470 ARG B 109 CG CD NE CZ NH1 NH2 REMARK 470 THR B 116 OG1 CG2 REMARK 470 LYS B 119 CG CD CE NZ REMARK 470 ARG B 122 CZ NH1 NH2 REMARK 470 ASP B 144 CG OD1 OD2 REMARK 470 TYR B 145 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 SER B 146 OG REMARK 470 VAL B 156 CG1 CG2 REMARK 470 LYS B 159 CG CD CE NZ REMARK 470 LYS B 162 NZ REMARK 470 ILE B 165 CG1 CG2 CD1 REMARK 470 GLU B 169 CG CD OE1 OE2 REMARK 470 GLU B 171 CG CD OE1 OE2 REMARK 470 ARG B 173 CG CD NE CZ NH1 NH2 REMARK 470 ASP B 174 CG OD1 OD2 REMARK 470 ARG B 181 CG CD NE CZ NH1 NH2 REMARK 470 VAL B 182 CG1 CG2 REMARK 470 LYS B 184 CG CD CE NZ REMARK 470 GLU B 185 CG CD OE1 OE2 REMARK 470 ARG B 186 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 192 CG CD CE NZ REMARK 470 ILE B 193 CG1 CG2 CD1 REMARK 470 VAL B 194 CG1 CG2 REMARK 470 ILE B 195 CG1 CG2 CD1 REMARK 470 TYR B 197 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 SER B 199 OG REMARK 470 HIS B 200 CG ND1 CD2 CE1 NE2 REMARK 470 THR B 203 OG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NH2 ARG A 109 OE1 GLU A 169 2156 2.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 99 C PRO A 100 N 0.150 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 67 21.27 -143.87 REMARK 500 ASP A 143 -136.89 60.69 REMARK 500 ASP B 67 25.61 -146.81 REMARK 500 ASP B 125 -30.18 -130.14 REMARK 500 ASP B 143 -139.80 62.85 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 YDZ A 301 REMARK 610 YDZ B 300 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue YDZ A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue YDZ B 300 DBREF 5M83 A 28 217 UNP P63073 IF4E_MOUSE 28 217 DBREF 5M83 B 28 217 UNP P63073 IF4E_MOUSE 28 217 SEQRES 1 A 190 VAL ALA ASN PRO GLU HIS TYR ILE LYS HIS PRO LEU GLN SEQRES 2 A 190 ASN ARG TRP ALA LEU TRP PHE PHE LYS ASN ASP LYS SER SEQRES 3 A 190 LYS THR TRP GLN ALA ASN LEU ARG LEU ILE SER LYS PHE SEQRES 4 A 190 ASP THR VAL GLU ASP PHE TRP ALA LEU TYR ASN HIS ILE SEQRES 5 A 190 GLN LEU SER SER ASN LEU MET PRO GLY CYS ASP TYR SER SEQRES 6 A 190 LEU PHE LYS ASP GLY ILE GLU PRO MET TRP GLU ASP GLU SEQRES 7 A 190 LYS ASN LYS ARG GLY GLY ARG TRP LEU ILE THR LEU ASN SEQRES 8 A 190 LYS GLN GLN ARG ARG SER ASP LEU ASP ARG PHE TRP LEU SEQRES 9 A 190 GLU THR LEU LEU CYS LEU ILE GLY GLU SER PHE ASP ASP SEQRES 10 A 190 TYR SER ASP ASP VAL CYS GLY ALA VAL VAL ASN VAL ARG SEQRES 11 A 190 ALA LYS GLY ASP LYS ILE ALA ILE TRP THR THR GLU CYS SEQRES 12 A 190 GLU ASN ARG ASP ALA VAL THR HIS ILE GLY ARG VAL TYR SEQRES 13 A 190 LYS GLU ARG LEU GLY LEU PRO PRO LYS ILE VAL ILE GLY SEQRES 14 A 190 TYR GLN SER HIS ALA ASP THR ALA THR LYS SER GLY SER SEQRES 15 A 190 THR THR LYS ASN ARG PHE VAL VAL SEQRES 1 B 190 VAL ALA ASN PRO GLU HIS TYR ILE LYS HIS PRO LEU GLN SEQRES 2 B 190 ASN ARG TRP ALA LEU TRP PHE PHE LYS ASN ASP LYS SER SEQRES 3 B 190 LYS THR TRP GLN ALA ASN LEU ARG LEU ILE SER LYS PHE SEQRES 4 B 190 ASP THR VAL GLU ASP PHE TRP ALA LEU TYR ASN HIS ILE SEQRES 5 B 190 GLN LEU SER SER ASN LEU MET PRO GLY CYS ASP TYR SER SEQRES 6 B 190 LEU PHE LYS ASP GLY ILE GLU PRO MET TRP GLU ASP GLU SEQRES 7 B 190 LYS ASN LYS ARG GLY GLY ARG TRP LEU ILE THR LEU ASN SEQRES 8 B 190 LYS GLN GLN ARG ARG SER ASP LEU ASP ARG PHE TRP LEU SEQRES 9 B 190 GLU THR LEU LEU CYS LEU ILE GLY GLU SER PHE ASP ASP SEQRES 10 B 190 TYR SER ASP ASP VAL CYS GLY ALA VAL VAL ASN VAL ARG SEQRES 11 B 190 ALA LYS GLY ASP LYS ILE ALA ILE TRP THR THR GLU CYS SEQRES 12 B 190 GLU ASN ARG ASP ALA VAL THR HIS ILE GLY ARG VAL TYR SEQRES 13 B 190 LYS GLU ARG LEU GLY LEU PRO PRO LYS ILE VAL ILE GLY SEQRES 14 B 190 TYR GLN SER HIS ALA ASP THR ALA THR LYS SER GLY SER SEQRES 15 B 190 THR THR LYS ASN ARG PHE VAL VAL HET YDZ A 301 34 HET GOL A 302 6 HET YDZ B 300 34 HETNAM YDZ [[[(2~{R},3~{S},4~{R},5~{R})-5-(6-AMINOPURIN-9-YL)-3,4- HETNAM 2 YDZ BIS(OXIDANYL)OXOLAN-2-YL]METHOXY-OXIDANYL- HETNAM 3 YDZ PHOSPHORYL]OXY-SULFANYL-PHOSPHORYL] [(2~{R},3~{R}, HETNAM 4 YDZ 4~{R},5~{R})-5-(2-AZANYL-7-METHYL-6-OXIDANYL-PURIN-7- HETNAM 5 YDZ IUM-9-YL)-4-METHOXY-3-OXIDANYL-OXOLAN-2-YL]METHYL HETNAM 6 YDZ HYDROGEN PHOSPHATE HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 YDZ 2(C22 H32 N10 O16 P3 S 1+) FORMUL 4 GOL C3 H8 O3 FORMUL 6 HOH *151(H2 O) HELIX 1 AA1 TRP A 56 ALA A 58 5 3 HELIX 2 AA2 VAL A 69 ASN A 77 1 9 HELIX 3 AA3 LEU A 81 LEU A 85 5 5 HELIX 4 AA4 GLN A 120 ASP A 125 1 6 HELIX 5 AA5 ASP A 125 GLY A 139 1 15 HELIX 6 AA6 PHE A 142 ASP A 147 5 6 HELIX 7 AA7 ASN A 172 GLY A 188 1 17 HELIX 8 AA8 HIS A 200 ALA A 204 1 5 HELIX 9 AA9 THR B 55 ASN B 59 1 5 HELIX 10 AB1 VAL B 69 ILE B 79 1 11 HELIX 11 AB2 LEU B 81 LEU B 85 5 5 HELIX 12 AB3 ASP B 104 ARG B 109 1 6 HELIX 13 AB4 GLN B 120 ASP B 125 1 6 HELIX 14 AB5 ASP B 125 GLY B 139 1 15 HELIX 15 AB6 PHE B 142 ASP B 147 5 6 HELIX 16 AB7 ASN B 172 GLY B 188 1 17 SHEET 1 AA1 8 LEU A 60 THR A 68 0 SHEET 2 AA1 8 PRO A 38 PHE A 48 -1 N LEU A 45 O ILE A 63 SHEET 3 AA1 8 ASP A 90 LYS A 95 -1 O SER A 92 N TRP A 46 SHEET 4 AA1 8 VAL A 149 ASN A 155 -1 O CYS A 150 N LYS A 95 SHEET 5 AA1 8 ASP A 161 THR A 167 -1 O LYS A 162 N ASN A 155 SHEET 6 AA1 8 GLY A 111 LEU A 117 -1 N ILE A 115 O ILE A 163 SHEET 7 AA1 8 ILE A 195 SER A 199 -1 O GLY A 196 N LEU A 114 SHEET 8 AA1 8 PHE A 215 VAL A 217 -1 O PHE A 215 N TYR A 197 SHEET 1 AA2 7 LEU B 60 THR B 68 0 SHEET 2 AA2 7 PRO B 38 LYS B 49 -1 N LEU B 39 O ASP B 67 SHEET 3 AA2 7 CYS B 89 LYS B 95 -1 O SER B 92 N TRP B 46 SHEET 4 AA2 7 VAL B 149 VAL B 156 -1 O VAL B 156 N CYS B 89 SHEET 5 AA2 7 LYS B 162 THR B 167 -1 O LYS B 162 N ASN B 155 SHEET 6 AA2 7 GLY B 111 THR B 116 -1 N TRP B 113 O ILE B 165 SHEET 7 AA2 7 GLY B 196 SER B 199 -1 O GLN B 198 N ARG B 112 SITE 1 AC1 11 TRP A 56 MET A 101 TRP A 102 GLU A 103 SITE 2 AC1 11 ASP A 143 ARG A 157 LYS A 162 HOH A 408 SITE 3 AC1 11 HOH A 428 HOH A 438 HOH A 465 SITE 1 AC2 4 THR A 116 GLN A 121 ILE A 195 HOH A 401 SITE 1 AC3 7 TRP B 56 MET B 101 TRP B 102 GLU B 103 SITE 2 AC3 7 ARG B 157 LYS B 162 HOH B 424 CRYST1 47.060 59.740 149.180 90.00 96.32 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021249 0.000000 0.002353 0.00000 SCALE2 0.000000 0.016739 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006744 0.00000