HEADER FLUORESCENT PROTEIN 03-NOV-16 5MA4 TITLE GFP-BINDING DARPIN FUSION GC_K7 COMPND MOL_ID: 1; COMPND 2 MOLECULE: GREEN FLUORESCENT PROTEIN; COMPND 3 CHAIN: B; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: K7; COMPND 7 CHAIN: A; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AEQUOREA VICTORIA; SOURCE 3 ORGANISM_TAXID: 6100; SOURCE 4 GENE: GFP; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI K-12; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 83333; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 9 ORGANISM_TAXID: 32630; SOURCE 10 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 11 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS GREEN FLUORESCENT PROTEIN, DESIGNED ANKYRIN PROTEIN, FLUORESCENT KEYWDS 2 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR S.HANSEN,J.STUEBER,P.ERNST,A.KOCH,D.BOJAR,A.BATYUK,A.PLUECKTHUN REVDAT 4 23-OCT-24 5MA4 1 REMARK REVDAT 3 15-NOV-23 5MA4 1 ATOM REVDAT 2 06-DEC-17 5MA4 1 JRNL REVDAT 1 08-NOV-17 5MA4 0 JRNL AUTH S.HANSEN,J.C.STUBER,P.ERNST,A.KOCH,D.BOJAR,A.BATYUK, JRNL AUTH 2 A.PLUCKTHUN JRNL TITL DESIGN AND APPLICATIONS OF A CLAMP FOR GREEN FLUORESCENT JRNL TITL 2 PROTEIN WITH PICOMOLAR AFFINITY. JRNL REF SCI REP V. 7 16292 2017 JRNL REFN ESSN 2045-2322 JRNL PMID 29176615 JRNL DOI 10.1038/S41598-017-15711-Z REMARK 2 REMARK 2 RESOLUTION. 1.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.11_2567: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.29 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 102235 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.143 REMARK 3 R VALUE (WORKING SET) : 0.142 REMARK 3 FREE R VALUE : 0.170 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.750 REMARK 3 FREE R VALUE TEST SET COUNT : 4853 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.3198 - 4.3490 1.00 3324 148 0.1542 0.1624 REMARK 3 2 4.3490 - 3.4522 1.00 3346 95 0.1238 0.1309 REMARK 3 3 3.4522 - 3.0159 1.00 3213 205 0.1446 0.1587 REMARK 3 4 3.0159 - 2.7402 1.00 3297 142 0.1441 0.1514 REMARK 3 5 2.7402 - 2.5438 1.00 3226 165 0.1377 0.1938 REMARK 3 6 2.5438 - 2.3939 1.00 3216 218 0.1284 0.1542 REMARK 3 7 2.3939 - 2.2740 1.00 3251 160 0.1306 0.1665 REMARK 3 8 2.2740 - 2.1750 1.00 3228 159 0.1371 0.1572 REMARK 3 9 2.1750 - 2.0913 1.00 3251 169 0.1364 0.1855 REMARK 3 10 2.0913 - 2.0191 1.00 3246 162 0.1355 0.1686 REMARK 3 11 2.0191 - 1.9560 1.00 3276 135 0.1385 0.1732 REMARK 3 12 1.9560 - 1.9000 1.00 3233 195 0.1304 0.1683 REMARK 3 13 1.9000 - 1.8500 1.00 3261 157 0.1347 0.1701 REMARK 3 14 1.8500 - 1.8049 1.00 3215 162 0.1264 0.1774 REMARK 3 15 1.8049 - 1.7639 1.00 3284 141 0.1295 0.1623 REMARK 3 16 1.7639 - 1.7263 1.00 3234 164 0.1316 0.1929 REMARK 3 17 1.7263 - 1.6918 1.00 3218 160 0.1296 0.1470 REMARK 3 18 1.6918 - 1.6599 1.00 3261 160 0.1381 0.1812 REMARK 3 19 1.6599 - 1.6302 1.00 3278 147 0.1458 0.1724 REMARK 3 20 1.6302 - 1.6026 1.00 3252 143 0.1438 0.1961 REMARK 3 21 1.6026 - 1.5767 1.00 3242 169 0.1503 0.1992 REMARK 3 22 1.5767 - 1.5525 1.00 3198 173 0.1533 0.2017 REMARK 3 23 1.5525 - 1.5296 1.00 3234 177 0.1596 0.1976 REMARK 3 24 1.5296 - 1.5081 1.00 3227 167 0.1638 0.2020 REMARK 3 25 1.5081 - 1.4877 1.00 3247 146 0.1712 0.2159 REMARK 3 26 1.4877 - 1.4684 1.00 3234 182 0.1805 0.2078 REMARK 3 27 1.4684 - 1.4500 1.00 3206 168 0.2008 0.2665 REMARK 3 28 1.4500 - 1.4326 1.00 3233 167 0.2144 0.2483 REMARK 3 29 1.4326 - 1.4159 1.00 3242 139 0.2230 0.2669 REMARK 3 30 1.4159 - 1.4000 1.00 3209 178 0.2445 0.2686 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.140 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 16.790 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.014 4403 REMARK 3 ANGLE : 1.275 6019 REMARK 3 CHIRALITY : 0.096 663 REMARK 3 PLANARITY : 0.009 811 REMARK 3 DIHEDRAL : 18.132 1604 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5MA4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 03-NOV-16. REMARK 100 THE DEPOSITION ID IS D_1200002149. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-OCT-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06DA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 102263 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.400 REMARK 200 RESOLUTION RANGE LOW (A) : 47.293 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 5.400 REMARK 200 R MERGE (I) : 0.05300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.6300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.44 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 5.20 REMARK 200 R MERGE FOR SHELL (I) : 0.89200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.110 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.43 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.25 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M SODIUM ACETATE TRIHYDRATE, 0.1M REMARK 280 TRIS HCL PH 8.5, 30%W/V PEG 4000, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 46.17000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3270 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21520 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -13.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY B -4 REMARK 465 PRO B -3 REMARK 465 GLY B -2 REMARK 465 SER B -1 REMARK 465 GLY B 232 REMARK 465 MET B 233 REMARK 465 ASP B 234 REMARK 465 GLU B 235 REMARK 465 LEU B 236 REMARK 465 TYR B 237 REMARK 465 LYS B 238 REMARK 465 GLN B 239 REMARK 465 ALA B 240 REMARK 465 GLY A 9 REMARK 465 PRO A 10 REMARK 465 GLY A 11 REMARK 465 SER A 12 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 THR B 230 O REMARK 470 GLN A 166 O REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 H LYS A 101 O HOH A 402 1.18 REMARK 500 H GLY A 250 O HOH A 407 1.33 REMARK 500 HH12 ARG B 73 O HOH B 304 1.35 REMARK 500 H ALA A 35 O HOH A 403 1.38 REMARK 500 HH21 ARG A 31 O HOH A 414 1.41 REMARK 500 HZ1 LYS B 113 O HOH B 303 1.44 REMARK 500 HZ1 LYS A 147 O HOH A 401 1.45 REMARK 500 HZ3 LYS A 101 O HOH A 415 1.53 REMARK 500 H PHE A 251 O HOH A 405 1.55 REMARK 500 OD2 ASP A 155 O HOH A 401 1.55 REMARK 500 H GLN A 248 O HOH A 424 1.56 REMARK 500 H PHE A 251 O HOH A 405 1.57 REMARK 500 HZ1 LYS A 144 O HOH A 421 1.60 REMARK 500 O HOH A 504 O HOH A 512 1.61 REMARK 500 O GLU A 97 O HOH A 402 1.66 REMARK 500 O HOH A 443 O HOH A 659 1.69 REMARK 500 O ARG A 31 O HOH A 403 1.71 REMARK 500 O HOH A 410 O HOH A 631 1.71 REMARK 500 O HOH A 711 O HOH A 752 1.73 REMARK 500 OD2 ASP A 138 O HOH A 404 1.75 REMARK 500 O HOH A 758 O HOH A 773 1.75 REMARK 500 O GLU A 97 O HOH A 402 1.76 REMARK 500 O PHE A 251 O HOH A 405 1.77 REMARK 500 O HOH A 410 O HOH A 704 1.81 REMARK 500 O HOH B 340 O HOH A 421 1.83 REMARK 500 OD1 ASP A 155 O HOH A 406 1.83 REMARK 500 O HOH A 419 O HOH A 675 1.84 REMARK 500 O HOH A 454 O HOH A 494 1.85 REMARK 500 OD1 ASP A 246 O HOH A 407 1.86 REMARK 500 NH2 ARG B 168 O HOH B 301 1.87 REMARK 500 O HOH A 773 O HOH A 783 1.89 REMARK 500 O HOH B 417 O HOH B 536 1.89 REMARK 500 N LYS A 101 O HOH A 402 1.90 REMARK 500 OD1 ASN B 144 O HOH B 302 1.92 REMARK 500 O HOH B 323 O HOH B 431 1.94 REMARK 500 O HOH B 352 O HOH B 561 1.95 REMARK 500 O HOH A 494 O HOH A 641 1.96 REMARK 500 O HOH B 358 O HOH B 490 1.97 REMARK 500 O ASP A 247 O HOH A 408 1.97 REMARK 500 O HOH A 758 O HOH A 774 1.98 REMARK 500 O HOH B 449 O HOH B 536 1.98 REMARK 500 O HOH B 430 O HOH A 641 2.01 REMARK 500 NZ LYS B 113 O HOH B 303 2.01 REMARK 500 NH1 ARG B 73 O HOH B 304 2.01 REMARK 500 O HOH A 689 O HOH A 698 2.02 REMARK 500 O HOH B 307 O HOH B 430 2.02 REMARK 500 O ALA A 208 O HOH A 409 2.04 REMARK 500 O TRP A 122 O HOH B 304 2.05 REMARK 500 N GLY A 250 O HOH A 407 2.06 REMARK 500 N LEU A 100 O HOH A 402 2.06 REMARK 500 REMARK 500 THIS ENTRY HAS 76 CLOSE CONTACTS REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 675 O HOH A 692 2545 1.77 REMARK 500 O HOH B 391 O HOH A 415 2546 1.80 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 TRP A 122 CB TRP A 122 CG 0.161 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 138 CB - CG - OD1 ANGL. DEV. = 9.6 DEGREES REMARK 500 ASP A 138 CB - CG - OD2 ANGL. DEV. = -7.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN B 144 -177.81 -170.73 REMARK 500 ASN A 158 69.05 -105.01 REMARK 500 TRP A 194 42.61 -78.53 REMARK 500 ASP A 246 -86.29 -146.48 REMARK 500 ASP A 247 -103.11 68.18 REMARK 500 PHE A 251 153.38 178.96 REMARK 500 ASN A 295 61.53 -110.79 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 618 DISTANCE = 6.42 ANGSTROMS DBREF 5MA4 B 2 238 UNP P42212 GFP_AEQVI 2 238 DBREF 5MA4 A 9 306 PDB 5MA4 5MA4 9 306 SEQADV 5MA4 GLY B -4 UNP P42212 EXPRESSION TAG SEQADV 5MA4 PRO B -3 UNP P42212 EXPRESSION TAG SEQADV 5MA4 GLY B -2 UNP P42212 EXPRESSION TAG SEQADV 5MA4 SER B -1 UNP P42212 EXPRESSION TAG SEQADV 5MA4 MET B 0 UNP P42212 EXPRESSION TAG SEQADV 5MA4 VAL B 1 UNP P42212 EXPRESSION TAG SEQADV 5MA4 LEU B 64 UNP P42212 PHE 64 CONFLICT SEQADV 5MA4 B UNP P42212 SER 65 CHROMOPHORE SEQADV 5MA4 B UNP P42212 TYR 66 CHROMOPHORE SEQADV 5MA4 CRO B 66 UNP P42212 GLY 67 CHROMOPHORE SEQADV 5MA4 LEU B 231 UNP P42212 HIS 231 CONFLICT SEQADV 5MA4 GLN B 239 UNP P42212 EXPRESSION TAG SEQADV 5MA4 ALA B 240 UNP P42212 EXPRESSION TAG SEQRES 1 B 243 GLY PRO GLY SER MET VAL SER LYS GLY GLU GLU LEU PHE SEQRES 2 B 243 THR GLY VAL VAL PRO ILE LEU VAL GLU LEU ASP GLY ASP SEQRES 3 B 243 VAL ASN GLY HIS LYS PHE SER VAL SER GLY GLU GLY GLU SEQRES 4 B 243 GLY ASP ALA THR TYR GLY LYS LEU THR LEU LYS PHE ILE SEQRES 5 B 243 CYS THR THR GLY LYS LEU PRO VAL PRO TRP PRO THR LEU SEQRES 6 B 243 VAL THR THR LEU CRO VAL GLN CYS PHE SER ARG TYR PRO SEQRES 7 B 243 ASP HIS MET LYS GLN HIS ASP PHE PHE LYS SER ALA MET SEQRES 8 B 243 PRO GLU GLY TYR VAL GLN GLU ARG THR ILE PHE PHE LYS SEQRES 9 B 243 ASP ASP GLY ASN TYR LYS THR ARG ALA GLU VAL LYS PHE SEQRES 10 B 243 GLU GLY ASP THR LEU VAL ASN ARG ILE GLU LEU LYS GLY SEQRES 11 B 243 ILE ASP PHE LYS GLU ASP GLY ASN ILE LEU GLY HIS LYS SEQRES 12 B 243 LEU GLU TYR ASN TYR ASN SER HIS ASN VAL TYR ILE MET SEQRES 13 B 243 ALA ASP LYS GLN LYS ASN GLY ILE LYS VAL ASN PHE LYS SEQRES 14 B 243 ILE ARG HIS ASN ILE GLU ASP GLY SER VAL GLN LEU ALA SEQRES 15 B 243 ASP HIS TYR GLN GLN ASN THR PRO ILE GLY ASP GLY PRO SEQRES 16 B 243 VAL LEU LEU PRO ASP ASN HIS TYR LEU SER THR GLN SER SEQRES 17 B 243 ALA LEU SER LYS ASP PRO ASN GLU LYS ARG ASP HIS MET SEQRES 18 B 243 VAL LEU LEU GLU PHE VAL THR ALA ALA GLY ILE THR LEU SEQRES 19 B 243 GLY MET ASP GLU LEU TYR LYS GLN ALA SEQRES 1 A 298 GLY PRO GLY SER ASP LEU GLY LYS LYS LEU LEU GLU ALA SEQRES 2 A 298 ALA ARG ALA GLY GLN ASP ASP GLU VAL ARG ILE LEU MET SEQRES 3 A 298 ALA ASN GLY ALA ASP VAL ASN ALA ALA ASP ASP VAL GLY SEQRES 4 A 298 VAL THR PRO LEU HIS LEU ALA ALA GLN ARG GLY HIS LEU SEQRES 5 A 298 GLU ILE VAL GLU VAL LEU LEU LYS TYR GLY ALA ASP VAL SEQRES 6 A 298 ASN ALA ALA ASP LEU TRP GLY GLN THR PRO LEU HIS LEU SEQRES 7 A 298 ALA ALA THR ALA GLY HIS LEU GLU ILE VAL GLU VAL LEU SEQRES 8 A 298 LEU LYS ASN GLY ALA ASP VAL ASN ALA ARG ASP ASN ILE SEQRES 9 A 298 GLY HIS THR PRO LEU HIS LEU ALA ALA TRP ALA GLY HIS SEQRES 10 A 298 LEU GLU ILE VAL GLU VAL LEU LEU LYS TYR GLY ALA ASP SEQRES 11 A 298 VAL ASN ALA GLN ASP LYS PHE GLY LYS THR PRO PHE ASP SEQRES 12 A 298 LEU ALA ILE ASP ASN GLY ASN GLU ASP ILE ALA GLU VAL SEQRES 13 A 298 LEU GLN LYS ALA ALA GLY GLY GLY SER GLY GLY GLY ASP SEQRES 14 A 298 VAL ASN ALA TYR ASP GLU VAL GLY TRP THR PRO LEU HIS SEQRES 15 A 298 LYS ALA ALA TRP GLY HIS LEU GLU LYS VAL GLU ASP LEU SEQRES 16 A 298 LEU LYS ASN GLY ALA ASP VAL ASN ALA ALA ASP ILE ASP SEQRES 17 A 298 GLY TYR THR PRO LEU HIS LEU ALA ALA PHE SER GLY HIS SEQRES 18 A 298 LEU GLU ILE VAL GLU VAL LEU LEU LYS TYR GLY ALA ASP SEQRES 19 A 298 VAL ASN ALA ASP ASP GLN ALA GLY PHE THR PRO LEU HIS SEQRES 20 A 298 LEU ALA ALA ILE PHE GLY HIS LEU GLU ILE VAL GLU VAL SEQRES 21 A 298 LEU LEU LYS ASN GLY ALA ASP VAL ASN ALA GLN ASP LYS SEQRES 22 A 298 PHE GLY LYS THR PRO PHE ASP LEU ALA ILE ASP ASN GLY SEQRES 23 A 298 ASN GLU ASP ILE ALA GLU VAL LEU GLN LYS ALA ALA MODRES 5MA4 CRO B 66 GLY CHROMOPHORE HET CRO B 66 37 HETNAM CRO {2-[(1R,2R)-1-AMINO-2-HYDROXYPROPYL]-4-(4- HETNAM 2 CRO HYDROXYBENZYLIDENE)-5-OXO-4,5-DIHYDRO-1H-IMIDAZOL-1- HETNAM 3 CRO YL}ACETIC ACID HETSYN CRO PEPTIDE DERIVED CHROMOPHORE FORMUL 1 CRO C15 H17 N3 O5 FORMUL 3 HOH *725(H2 O) HELIX 1 AA1 LYS B 3 THR B 9 5 7 HELIX 2 AA2 PRO B 56 VAL B 61 5 6 HELIX 3 AA3 VAL B 68 SER B 72 5 5 HELIX 4 AA4 PRO B 75 HIS B 81 5 7 HELIX 5 AA5 ASP B 82 ALA B 87 1 6 HELIX 6 AA6 LYS B 156 ASN B 159 5 4 HELIX 7 AA7 LEU A 14 GLY A 25 1 12 HELIX 8 AA8 GLN A 26 ASN A 36 1 11 HELIX 9 AA9 THR A 49 GLY A 58 1 10 HELIX 10 AB1 HIS A 59 TYR A 69 1 11 HELIX 11 AB2 THR A 82 GLY A 91 1 10 HELIX 12 AB3 HIS A 92 ASN A 102 1 11 HELIX 13 AB4 THR A 115 GLY A 124 1 10 HELIX 14 AB5 HIS A 125 TYR A 135 1 11 HELIX 15 AB6 THR A 148 ASN A 156 1 9 HELIX 16 AB7 ASN A 158 GLN A 166 1 9 HELIX 17 AB8 THR A 187 ALA A 193 1 7 HELIX 18 AB9 HIS A 196 ASN A 206 1 11 HELIX 19 AC1 THR A 219 GLY A 228 1 10 HELIX 20 AC2 HIS A 229 TYR A 239 1 11 HELIX 21 AC3 THR A 252 GLY A 261 1 10 HELIX 22 AC4 HIS A 262 ASN A 272 1 11 HELIX 23 AC5 THR A 285 ASN A 293 1 9 HELIX 24 AC6 ASN A 295 LYS A 304 1 10 SHEET 1 AA112 VAL B 12 VAL B 22 0 SHEET 2 AA112 HIS B 25 ASP B 36 -1 O PHE B 27 N GLY B 20 SHEET 3 AA112 LYS B 41 CYS B 48 -1 O ILE B 47 N SER B 30 SHEET 4 AA112 HIS B 217 ALA B 227 -1 O GLU B 222 N LEU B 42 SHEET 5 AA112 HIS B 199 SER B 208 -1 N SER B 202 O THR B 225 SHEET 6 AA112 ASN B 149 ASP B 155 -1 N VAL B 150 O LEU B 201 SHEET 7 AA112 GLY B 160 ASN B 170 -1 O GLY B 160 N ASP B 155 SHEET 8 AA112 VAL B 176 PRO B 187 -1 O GLN B 177 N HIS B 169 SHEET 9 AA112 TYR B 92 PHE B 100 -1 N VAL B 93 O THR B 186 SHEET 10 AA112 ASN B 105 GLU B 115 -1 O TYR B 106 N ILE B 98 SHEET 11 AA112 THR B 118 ILE B 128 -1 O VAL B 120 N LYS B 113 SHEET 12 AA112 VAL B 12 VAL B 22 1 N ASP B 21 O GLY B 127 LINK C LEU B 64 N1 CRO B 66 1555 1555 1.36 LINK C3 CRO B 66 N VAL B 68 1555 1555 1.34 CISPEP 1 MET B 88 PRO B 89 0 5.23 CRYST1 55.880 92.340 56.530 90.00 114.60 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017895 0.000000 0.008192 0.00000 SCALE2 0.000000 0.010830 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019455 0.00000