HEADER TRANSFERASE 03-NOV-16 5MAH TITLE CRYSTAL STRUCTURE OF MELK IN COMPLEX WITH AN INHIBITOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: MATERNAL EMBRYONIC LEUCINE ZIPPER KINASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 2-340; COMPND 5 SYNONYM: HMELK,PROTEIN KINASE EG3,PEG3 KINASE,PROTEIN KINASE PK38, COMPND 6 HPK38,TYROSINE-PROTEIN KINASE MELK; COMPND 7 EC: 2.7.11.1,2.7.10.2; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: MELK, KIAA0175; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 9 EXPRESSION_SYSTEM_CELL_LINE: SF21; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS KEYWDS KINASE, INHIBITOR, COMPLEX, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR G.CANEVARI,S.RE DEPAOLINI,E.CASALE,E.FELDER,B.KUSTER,S.HEINZLMEIR REVDAT 4 06-NOV-24 5MAH 1 REMARK REVDAT 3 01-MAY-24 5MAH 1 REMARK REVDAT 2 13-DEC-17 5MAH 1 JRNL REVDAT 1 06-DEC-17 5MAH 0 JRNL AUTH S.KLAEGER,S.HEINZLMEIR,M.WILHELM,H.POLZER,B.VICK,P.A.KOENIG, JRNL AUTH 2 M.REINECKE,B.RUPRECHT,S.PETZOLDT,C.MENG,J.ZECHA,K.REITER, JRNL AUTH 3 H.QIAO,D.HELM,H.KOCH,M.SCHOOF,G.CANEVARI,E.CASALE, JRNL AUTH 4 S.R.DEPAOLINI,A.FEUCHTINGER,Z.WU,T.SCHMIDT,L.RUECKERT, JRNL AUTH 5 W.BECKER,J.HUENGES,A.K.GARZ,B.O.GOHLKE,D.P.ZOLG,G.KAYSER, JRNL AUTH 6 T.VOODER,R.PREISSNER,H.HAHNE,N.TONISSON,K.KRAMER,K.GOTZE, JRNL AUTH 7 F.BASSERMANN,J.SCHLEGL,H.C.EHRLICH,S.AICHE,A.WALCH, JRNL AUTH 8 P.A.GREIF,S.SCHNEIDER,E.R.FELDER,J.RULAND,G.MEDARD, JRNL AUTH 9 I.JEREMIAS,K.SPIEKERMANN,B.KUSTER JRNL TITL THE TARGET LANDSCAPE OF CLINICAL KINASE DRUGS. JRNL REF SCIENCE V. 358 2017 JRNL REFN ESSN 1095-9203 JRNL PMID 29191878 JRNL DOI 10.1126/SCIENCE.AAN4368 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0151 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.55 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.6 REMARK 3 NUMBER OF REFLECTIONS : 22356 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.185 REMARK 3 R VALUE (WORKING SET) : 0.183 REMARK 3 FREE R VALUE : 0.237 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 1130 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1645 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.46 REMARK 3 BIN R VALUE (WORKING SET) : 0.2990 REMARK 3 BIN FREE R VALUE SET COUNT : 84 REMARK 3 BIN FREE R VALUE : 0.3720 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2574 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 44 REMARK 3 SOLVENT ATOMS : 96 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 38.42 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.48000 REMARK 3 B22 (A**2) : -0.30000 REMARK 3 B33 (A**2) : 2.78000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.184 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.170 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.962 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.931 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2701 ; 0.011 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2616 ; 0.000 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3659 ; 1.439 ; 1.987 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6031 ; 3.566 ; 3.002 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 323 ; 5.739 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 123 ;37.102 ;24.390 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 498 ;14.887 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 13 ;19.051 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 404 ; 0.076 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2974 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 607 ; 0.008 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1271 ; 2.211 ; 3.601 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1270 ; 2.201 ; 3.598 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1586 ; 3.392 ; 5.381 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1587 ; 3.392 ; 5.384 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1430 ; 2.788 ; 3.953 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1430 ; 2.783 ; 3.952 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2069 ; 4.429 ; 5.777 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 3086 ; 6.426 ;41.754 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 3087 ; 6.426 ;41.766 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5MAH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 04-NOV-16. REMARK 100 THE DEPOSITION ID IS D_1200002020. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-OCT-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.976254 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : TOROIDAL MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23513 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 43.550 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 200 DATA REDUNDANCY : 5.100 REMARK 200 R MERGE (I) : 0.06800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.11 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.6 REMARK 200 DATA REDUNDANCY IN SHELL : 4.90 REMARK 200 R MERGE FOR SHELL (I) : 0.73500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: IN HOUSE MELK STRUCTURE REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.76 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.15 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10-20% PEG 3350 OR PEG 4000, 0.1 M BIS REMARK 280 TRIS PH 6.5, 0.6M NACL, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 29.83350 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 45.47250 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 31.85200 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 45.47250 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 29.83350 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 31.85200 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 640 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14810 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -23.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 PRO A 1 REMARK 465 PRO A 157 REMARK 465 LYS A 158 REMARK 465 GLY A 159 REMARK 465 ASN A 160 REMARK 465 LYS A 161 REMARK 465 ASP A 162 REMARK 465 TYR A 163 REMARK 465 HIS A 164 REMARK 465 LEU A 165 REMARK 465 GLN A 166 REMARK 465 THR A 167 REMARK 465 CYS A 168 REMARK 465 CYS A 169 REMARK 465 GLY A 170 REMARK 465 SER A 184 REMARK 465 TYR A 185 REMARK 465 LEU A 334 REMARK 465 SER A 335 REMARK 465 SER A 336 REMARK 465 PHE A 337 REMARK 465 SER A 338 REMARK 465 CYS A 339 REMARK 465 GLY A 340 REMARK 465 HIS A 341 REMARK 465 HIS A 342 REMARK 465 HIS A 343 REMARK 465 HIS A 344 REMARK 465 HIS A 345 REMARK 465 HIS A 346 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 TYR A 143 CG CD1 CD2 CE1 CE2 CZ OH REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 110 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 14 -156.64 -114.89 REMARK 500 ASP A 102 -61.09 75.19 REMARK 500 ASP A 102 -61.50 75.13 REMARK 500 ASP A 132 46.95 -143.23 REMARK 500 ASP A 150 78.26 69.81 REMARK 500 LEU A 244 41.78 -100.80 REMARK 500 ASP A 266 -5.54 69.66 REMARK 500 ILE A 280 -88.63 -94.37 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 7KD A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 405 DBREF 5MAH A 2 340 UNP Q14680 MELK_HUMAN 2 340 SEQADV 5MAH GLY A 0 UNP Q14680 EXPRESSION TAG SEQADV 5MAH PRO A 1 UNP Q14680 EXPRESSION TAG SEQADV 5MAH HIS A 341 UNP Q14680 EXPRESSION TAG SEQADV 5MAH HIS A 342 UNP Q14680 EXPRESSION TAG SEQADV 5MAH HIS A 343 UNP Q14680 EXPRESSION TAG SEQADV 5MAH HIS A 344 UNP Q14680 EXPRESSION TAG SEQADV 5MAH HIS A 345 UNP Q14680 EXPRESSION TAG SEQADV 5MAH HIS A 346 UNP Q14680 EXPRESSION TAG SEQRES 1 A 347 GLY PRO LYS ASP TYR ASP GLU LEU LEU LYS TYR TYR GLU SEQRES 2 A 347 LEU HIS GLU THR ILE GLY THR GLY GLY PHE ALA LYS VAL SEQRES 3 A 347 LYS LEU ALA CYS HIS ILE LEU THR GLY GLU MET VAL ALA SEQRES 4 A 347 ILE LYS ILE MET ASP LYS ASN THR LEU GLY SER ASP LEU SEQRES 5 A 347 PRO ARG ILE LYS THR GLU ILE GLU ALA LEU LYS ASN LEU SEQRES 6 A 347 ARG HIS GLN HIS ILE CYS GLN LEU TYR HIS VAL LEU GLU SEQRES 7 A 347 THR ALA ASN LYS ILE PHE MET VAL LEU GLU TYR CYS PRO SEQRES 8 A 347 GLY GLY GLU LEU PHE ASP TYR ILE ILE SER GLN ASP ARG SEQRES 9 A 347 LEU SER GLU GLU GLU THR ARG VAL VAL PHE ARG GLN ILE SEQRES 10 A 347 VAL SER ALA VAL ALA TYR VAL HIS SER GLN GLY TYR ALA SEQRES 11 A 347 HIS ARG ASP LEU LYS PRO GLU ASN LEU LEU PHE ASP GLU SEQRES 12 A 347 TYR HIS LYS LEU LYS LEU ILE ASP PHE GLY LEU CYS ALA SEQRES 13 A 347 LYS PRO LYS GLY ASN LYS ASP TYR HIS LEU GLN THR CYS SEQRES 14 A 347 CYS GLY SER LEU ALA TYR ALA ALA PRO GLU LEU ILE GLN SEQRES 15 A 347 GLY LYS SER TYR LEU GLY SER GLU ALA ASP VAL TRP SER SEQRES 16 A 347 MET GLY ILE LEU LEU TYR VAL LEU MET CYS GLY PHE LEU SEQRES 17 A 347 PRO PHE ASP ASP ASP ASN VAL MET ALA LEU TYR LYS LYS SEQRES 18 A 347 ILE MET ARG GLY LYS TYR ASP VAL PRO LYS TRP LEU SER SEQRES 19 A 347 PRO SER SER ILE LEU LEU LEU GLN GLN MET LEU GLN VAL SEQRES 20 A 347 ASP PRO LYS LYS ARG ILE SER MET LYS ASN LEU LEU ASN SEQRES 21 A 347 HIS PRO TRP ILE MET GLN ASP TYR ASN TYR PRO VAL GLU SEQRES 22 A 347 TRP GLN SER LYS ASN PRO PHE ILE HIS LEU ASP ASP ASP SEQRES 23 A 347 CYS VAL THR GLU LEU SER VAL HIS HIS ARG ASN ASN ARG SEQRES 24 A 347 GLN THR MET GLU ASP LEU ILE SER LEU TRP GLN TYR ASP SEQRES 25 A 347 HIS LEU THR ALA THR TYR LEU LEU LEU LEU ALA LYS LYS SEQRES 26 A 347 ALA ARG GLY LYS PRO VAL ARG LEU ARG LEU SER SER PHE SEQRES 27 A 347 SER CYS GLY HIS HIS HIS HIS HIS HIS HET 7KD A 401 35 HET GOL A 402 6 HET CL A 403 1 HET NA A 404 1 HET NA A 405 1 HETNAM 7KD ~{N}-METHYL-4-[[4-[[3-[METHYL(METHYLSULFONYL) HETNAM 2 7KD AMINO]PYRAZIN-2-YL]METHYLAMINO]-5-(TRIFLUOROMETHYL) HETNAM 3 7KD PYRIMIDIN-2-YL]AMINO]BENZAMIDE HETNAM GOL GLYCEROL HETNAM CL CHLORIDE ION HETNAM NA SODIUM ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 7KD C20 H21 F3 N8 O3 S FORMUL 3 GOL C3 H8 O3 FORMUL 4 CL CL 1- FORMUL 5 NA 2(NA 1+) FORMUL 7 HOH *96(H2 O) HELIX 1 AA1 ASP A 3 LYS A 9 1 7 HELIX 2 AA2 LYS A 44 GLY A 48 1 5 HELIX 3 AA3 ASP A 50 ASN A 63 1 14 HELIX 4 AA4 GLU A 93 ASP A 102 1 10 HELIX 5 AA5 SER A 105 GLN A 126 1 22 HELIX 6 AA6 LYS A 134 GLU A 136 5 3 HELIX 7 AA7 SER A 171 ALA A 175 5 5 HELIX 8 AA8 ALA A 176 GLN A 181 1 6 HELIX 9 AA9 GLY A 187 GLY A 205 1 19 HELIX 10 AB1 ASN A 213 GLY A 224 1 12 HELIX 11 AB2 SER A 233 LEU A 244 1 12 HELIX 12 AB3 SER A 253 LEU A 258 1 6 HELIX 13 AB4 HIS A 260 GLN A 265 1 6 HELIX 14 AB5 ASP A 283 ARG A 295 1 13 HELIX 15 AB6 ASN A 297 SER A 306 1 10 HELIX 16 AB7 ASP A 311 ARG A 326 1 16 SHEET 1 AA1 5 TYR A 11 THR A 19 0 SHEET 2 AA1 5 LYS A 24 HIS A 30 -1 O LEU A 27 N HIS A 14 SHEET 3 AA1 5 MET A 36 ASP A 43 -1 O ILE A 41 N LYS A 24 SHEET 4 AA1 5 LYS A 81 GLU A 87 -1 O LEU A 86 N ALA A 38 SHEET 5 AA1 5 LEU A 72 GLU A 77 -1 N LEU A 76 O PHE A 83 SHEET 1 AA2 2 LEU A 138 PHE A 140 0 SHEET 2 AA2 2 LEU A 146 LEU A 148 -1 O LYS A 147 N LEU A 139 SITE 1 AC1 19 ILE A 17 THR A 19 GLY A 20 ALA A 23 SITE 2 AC1 19 VAL A 25 ALA A 38 LYS A 40 CYS A 70 SITE 3 AC1 19 LEU A 86 GLU A 87 TYR A 88 CYS A 89 SITE 4 AC1 19 GLU A 93 GLU A 136 LEU A 139 ILE A 149 SITE 5 AC1 19 ASP A 150 HOH A 533 HOH A 535 SITE 1 AC2 10 GLU A 35 MET A 36 TYR A 73 GLU A 87 SITE 2 AC2 10 TYR A 88 GLU A 142 LEU A 319 ALA A 322 SITE 3 AC2 10 ARG A 326 HOH A 540 SITE 1 AC3 2 ARG A 114 GLU A 272 SITE 1 AC4 3 GLN A 181 TRP A 273 GLN A 274 CRYST1 59.667 63.704 90.945 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016760 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015698 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010996 0.00000 TER 2598 ARG A 333 HETATM 2599 C1 7KD A 401 -16.205 7.682 -5.579 1.00 27.89 C HETATM 2600 C2 7KD A 401 -15.511 8.836 -5.148 1.00 27.41 C HETATM 2601 C8 7KD A 401 -16.759 7.493 -6.912 1.00 28.69 C HETATM 2602 C13 7KD A 401 -13.893 9.008 -1.257 1.00 38.29 C HETATM 2603 C14 7KD A 401 -13.781 9.041 0.137 1.00 39.23 C HETATM 2604 C15 7KD A 401 -13.105 10.056 0.798 1.00 41.80 C HETATM 2605 C16 7KD A 401 -12.517 11.110 0.100 1.00 45.74 C HETATM 2606 C19 7KD A 401 -11.829 12.158 0.762 1.00 51.65 C HETATM 2607 C22 7KD A 401 -13.810 12.609 2.289 1.00 55.88 C HETATM 2608 C24 7KD A 401 -13.596 11.381 -6.367 1.00 30.71 C HETATM 2609 N26 7KD A 401 -12.216 12.266 -8.113 1.00 35.15 N HETATM 2610 C27 7KD A 401 -11.081 11.639 -7.552 1.00 31.36 C HETATM 2611 N29 7KD A 401 -12.533 10.765 -5.839 1.00 31.96 N HETATM 2612 C32 7KD A 401 -14.315 14.164 -8.462 1.00 36.05 C HETATM 2613 C33 7KD A 401 -13.810 11.645 -10.698 1.00 37.62 C HETATM 2614 N20 7KD A 401 -12.435 12.859 1.769 1.00 55.07 N HETATM 2615 O21 7KD A 401 -10.707 12.490 0.382 1.00 51.34 O HETATM 2616 C17 7KD A 401 -12.601 11.088 -1.295 1.00 43.48 C HETATM 2617 C18 7KD A 401 -13.269 10.055 -1.977 1.00 40.71 C HETATM 2618 N12 7KD A 401 -14.604 7.950 -1.758 1.00 32.23 N HETATM 2619 C4 7KD A 401 -15.123 7.920 -2.993 1.00 28.90 C HETATM 2620 N3 7KD A 401 -15.011 8.902 -3.898 1.00 26.83 N HETATM 2621 N5 7KD A 401 -15.773 6.797 -3.352 1.00 28.61 N HETATM 2622 C6 7KD A 401 -16.304 6.670 -4.634 1.00 26.64 C HETATM 2623 F10 7KD A 401 -17.323 6.264 -7.039 1.00 28.93 F HETATM 2624 F11 7KD A 401 -17.627 8.396 -7.218 1.00 28.82 F HETATM 2625 F9 7KD A 401 -15.762 7.617 -7.875 1.00 26.93 F HETATM 2626 N7 7KD A 401 -15.365 9.859 -6.006 1.00 28.43 N HETATM 2627 C23 7KD A 401 -14.806 11.180 -5.670 1.00 30.05 C HETATM 2628 C28 7KD A 401 -11.251 10.879 -6.414 1.00 32.69 C HETATM 2629 C25 7KD A 401 -13.434 12.153 -7.535 1.00 33.30 C HETATM 2630 N30 7KD A 401 -14.513 12.750 -8.093 1.00 36.29 N HETATM 2631 S31 7KD A 401 -15.049 11.782 -9.423 1.00 36.43 S HETATM 2632 O34 7KD A 401 -15.372 10.405 -8.853 1.00 37.26 O HETATM 2633 O35 7KD A 401 -16.278 12.353 -10.101 1.00 35.77 O HETATM 2634 C1 GOL A 402 -21.908 -0.606 -1.102 1.00 50.85 C HETATM 2635 O1 GOL A 402 -21.555 -1.905 -0.605 1.00 57.71 O HETATM 2636 C2 GOL A 402 -20.694 0.299 -1.084 1.00 48.99 C HETATM 2637 O2 GOL A 402 -21.037 1.582 -1.615 1.00 39.03 O HETATM 2638 C3 GOL A 402 -20.153 0.473 0.333 1.00 51.09 C HETATM 2639 O3 GOL A 402 -18.729 0.330 0.302 1.00 51.34 O HETATM 2640 CL CL A 403 -2.786 -10.796 -7.798 1.00 43.35 CL HETATM 2641 NA NA A 404 12.577 15.164 -6.290 1.00 66.96 NA HETATM 2642 NA NA A 405 -6.611 -14.587 -13.444 1.00 32.40 NA HETATM 2643 O HOH A 501 -26.500 7.968 6.140 1.00 43.57 O HETATM 2644 O HOH A 502 -10.897 11.886 -12.020 1.00 44.24 O HETATM 2645 O HOH A 503 11.088 10.062 0.940 1.00 49.91 O HETATM 2646 O HOH A 504 -32.288 -4.574 -12.361 1.00 45.58 O HETATM 2647 O HOH A 505 -26.075 -11.132 -10.018 1.00 43.25 O HETATM 2648 O HOH A 506 12.648 6.254 -20.458 1.00 33.03 O HETATM 2649 O HOH A 507 4.481 13.251 4.015 1.00 47.69 O HETATM 2650 O HOH A 508 -6.290 7.739 1.028 1.00 43.89 O HETATM 2651 O HOH A 509 -28.960 -16.811 -3.038 1.00 61.22 O HETATM 2652 O HOH A 510 5.347 1.202 2.957 1.00 27.69 O HETATM 2653 O HOH A 511 -0.015 12.258 -8.793 1.00 49.99 O HETATM 2654 O HOH A 512 -12.445 -10.417 -19.265 1.00 39.13 O HETATM 2655 O HOH A 513 -13.725 -14.581 -14.481 1.00 40.64 O HETATM 2656 O HOH A 514 9.891 10.771 -1.272 1.00 44.23 O HETATM 2657 O HOH A 515 -18.843 0.793 -23.842 1.00 44.68 O HETATM 2658 O HOH A 516 14.439 2.946 -14.338 1.00 28.26 O HETATM 2659 O HOH A 517 -42.550 -1.595 -2.402 1.00 47.41 O HETATM 2660 O HOH A 518 -2.190 -7.429 -4.031 1.00 31.25 O HETATM 2661 O HOH A 519 13.280 13.636 -19.345 1.00 27.89 O HETATM 2662 O HOH A 520 -27.473 -7.030 6.597 1.00 53.17 O HETATM 2663 O HOH A 521 10.229 2.816 -1.877 1.00 31.77 O HETATM 2664 O HOH A 522 -24.657 19.926 1.154 1.00 34.55 O HETATM 2665 O HOH A 523 16.587 11.212 -5.549 1.00 44.66 O HETATM 2666 O HOH A 524 9.375 -14.950 -4.521 1.00 43.07 O HETATM 2667 O HOH A 525 -6.545 -8.885 -5.865 1.00 49.23 O HETATM 2668 O HOH A 526 -17.897 3.354 -23.136 1.00 45.57 O HETATM 2669 O HOH A 527 -20.523 -3.647 -5.579 1.00 40.77 O HETATM 2670 O HOH A 528 -12.885 -8.609 -25.164 1.00 41.28 O HETATM 2671 O HOH A 529 12.810 12.607 -12.261 1.00 35.22 O HETATM 2672 O HOH A 530 -24.596 -4.758 -16.669 1.00 41.07 O HETATM 2673 O HOH A 531 -17.953 10.504 -16.840 1.00 47.34 O HETATM 2674 O HOH A 532 -3.237 9.046 -20.348 1.00 39.68 O HETATM 2675 O HOH A 533 -8.639 10.824 -0.237 1.00 44.76 O HETATM 2676 O HOH A 534 -17.138 -3.696 -10.549 1.00 32.95 O HETATM 2677 O HOH A 535 -15.714 8.602 -11.053 1.00 35.29 O HETATM 2678 O HOH A 536 7.799 -10.901 -17.784 1.00 39.59 O HETATM 2679 O HOH A 537 -22.246 0.623 3.470 1.00 46.80 O HETATM 2680 O HOH A 538 -4.207 -3.244 -0.420 1.00 40.44 O HETATM 2681 O HOH A 539 -7.529 -10.322 -8.178 1.00 35.91 O HETATM 2682 O HOH A 540 -16.288 0.017 -0.987 1.00 43.71 O HETATM 2683 O HOH A 541 -11.213 7.102 -18.332 1.00 29.24 O HETATM 2684 O HOH A 542 5.485 12.158 -14.520 1.00 23.87 O HETATM 2685 O HOH A 543 -16.160 5.863 -11.764 1.00 30.03 O HETATM 2686 O HOH A 544 3.918 10.867 -18.568 1.00 21.88 O HETATM 2687 O HOH A 545 11.867 3.764 -26.007 1.00 34.82 O HETATM 2688 O HOH A 546 -9.540 -19.098 -15.195 1.00 55.07 O HETATM 2689 O HOH A 547 -11.307 10.189 -16.944 1.00 49.43 O HETATM 2690 O HOH A 548 -16.341 -3.536 -7.001 1.00 41.19 O HETATM 2691 O HOH A 549 -29.578 14.494 4.467 1.00 49.97 O HETATM 2692 O HOH A 550 11.427 -1.046 -0.038 1.00 41.89 O HETATM 2693 O HOH A 551 -3.970 10.181 -16.030 1.00 48.02 O HETATM 2694 O HOH A 552 12.506 5.768 -23.057 1.00 27.75 O HETATM 2695 O HOH A 553 9.361 15.379 -9.454 1.00 46.79 O HETATM 2696 O HOH A 554 10.580 -13.386 -9.052 1.00 43.54 O HETATM 2697 O HOH A 555 19.215 9.118 -11.319 1.00 32.82 O HETATM 2698 O HOH A 556 5.328 14.697 -4.502 1.00 54.91 O HETATM 2699 O HOH A 557 -36.239 -1.865 -4.847 1.00 28.58 O HETATM 2700 O HOH A 558 -33.843 8.567 -14.770 1.00 59.59 O HETATM 2701 O HOH A 559 -21.233 18.674 -14.428 1.00 53.18 O HETATM 2702 O HOH A 560 18.681 -2.044 -12.585 1.00 44.90 O HETATM 2703 O HOH A 561 -3.878 5.871 -18.661 1.00 29.61 O HETATM 2704 O HOH A 562 7.041 -7.213 -23.517 1.00 32.14 O HETATM 2705 O HOH A 563 -43.554 -15.758 -5.793 1.00 47.73 O HETATM 2706 O HOH A 564 -3.272 -5.319 -23.035 1.00 32.44 O HETATM 2707 O HOH A 565 -30.793 4.068 -15.805 1.00 40.48 O HETATM 2708 O HOH A 566 -33.887 3.394 -1.389 1.00 32.14 O HETATM 2709 O HOH A 567 -19.753 -1.390 -12.724 1.00 33.33 O HETATM 2710 O HOH A 568 12.888 -9.253 -8.419 1.00 25.44 O HETATM 2711 O HOH A 569 -33.775 -2.986 -13.984 1.00 37.12 O HETATM 2712 O HOH A 570 -1.218 7.373 -21.208 1.00 24.97 O HETATM 2713 O HOH A 571 10.934 16.003 -13.952 1.00 33.08 O HETATM 2714 O HOH A 572 12.226 14.253 -15.574 1.00 38.98 O HETATM 2715 O HOH A 573 14.745 15.901 -19.268 1.00 34.56 O HETATM 2716 O HOH A 574 -15.298 12.344 -14.043 1.00 41.96 O HETATM 2717 O HOH A 575 -28.249 -17.793 -5.277 1.00 39.47 O HETATM 2718 O HOH A 576 2.162 18.371 -12.665 1.00 59.06 O HETATM 2719 O HOH A 577 -26.886 16.616 4.371 1.00 63.54 O HETATM 2720 O HOH A 578 -30.872 14.344 1.894 1.00 48.79 O HETATM 2721 O HOH A 579 -15.615 3.020 -11.439 1.00 47.34 O HETATM 2722 O HOH A 580 -38.128 -6.247 4.070 1.00 60.21 O HETATM 2723 O HOH A 581 5.043 -7.930 -1.796 1.00 42.36 O HETATM 2724 O HOH A 582 17.871 9.528 -3.814 1.00 25.78 O HETATM 2725 O HOH A 583 0.436 -3.636 -23.993 1.00 39.59 O HETATM 2726 O HOH A 584 -12.733 -11.813 -16.536 1.00 17.23 O HETATM 2727 O HOH A 585 -14.653 15.103 -12.671 1.00 37.72 O HETATM 2728 O HOH A 586 -21.077 -7.705 -4.713 1.00 40.62 O HETATM 2729 O HOH A 587 3.144 20.826 -11.580 1.00 59.22 O HETATM 2730 O HOH A 588 -30.261 -11.533 -15.767 1.00 55.27 O HETATM 2731 O HOH A 589 -1.959 -1.298 1.468 1.00 51.84 O HETATM 2732 O HOH A 590 13.937 4.498 -27.873 1.00 47.38 O HETATM 2733 O HOH A 591 16.878 3.520 -15.149 1.00 36.66 O HETATM 2734 O HOH A 592 -4.447 -5.971 0.195 1.00 48.17 O HETATM 2735 O HOH A 593 -23.952 -12.731 -9.377 1.00 54.89 O HETATM 2736 O HOH A 594 8.982 -13.133 -17.280 1.00 62.27 O HETATM 2737 O HOH A 595 -40.359 0.108 -0.682 1.00 56.05 O HETATM 2738 O HOH A 596 -25.404 -8.159 -16.681 1.00 68.11 O CONECT 2599 2600 2601 2622 CONECT 2600 2599 2620 2626 CONECT 2601 2599 2623 2624 2625 CONECT 2602 2603 2617 2618 CONECT 2603 2602 2604 CONECT 2604 2603 2605 CONECT 2605 2604 2606 2616 CONECT 2606 2605 2614 2615 CONECT 2607 2614 CONECT 2608 2611 2627 2629 CONECT 2609 2610 2629 CONECT 2610 2609 2628 CONECT 2611 2608 2628 CONECT 2612 2630 CONECT 2613 2631 CONECT 2614 2606 2607 CONECT 2615 2606 CONECT 2616 2605 2617 CONECT 2617 2602 2616 CONECT 2618 2602 2619 CONECT 2619 2618 2620 2621 CONECT 2620 2600 2619 CONECT 2621 2619 2622 CONECT 2622 2599 2621 CONECT 2623 2601 CONECT 2624 2601 CONECT 2625 2601 CONECT 2626 2600 2627 CONECT 2627 2608 2626 CONECT 2628 2610 2611 CONECT 2629 2608 2609 2630 CONECT 2630 2612 2629 2631 CONECT 2631 2613 2630 2632 2633 CONECT 2632 2631 CONECT 2633 2631 CONECT 2634 2635 2636 CONECT 2635 2634 CONECT 2636 2634 2637 2638 CONECT 2637 2636 CONECT 2638 2636 2639 CONECT 2639 2638 MASTER 346 0 5 16 7 0 10 6 2714 1 41 27 END