HEADER HYDROLASE 04-NOV-16 5MAR TITLE STRUCTURE OF HUMAN SIRT2 IN COMPLEX WITH 1,2,4-OXADIAZOLE INHIBITOR TITLE 2 AND ADP RIBOSE. COMPND MOL_ID: 1; COMPND 2 MOLECULE: NAD-DEPENDENT PROTEIN DEACETYLASE SIRTUIN-2; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: REGULATORY PROTEIN SIR2 HOMOLOG 2,SIR2-LIKE PROTEIN 2; COMPND 5 EC: 3.5.1.-; COMPND 6 ENGINEERED: YES; COMPND 7 OTHER_DETAILS: N-TERMINAL RESIDUES HM ARE CLONING ARTIFACT SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SIRT2, SIR2L, SIR2L2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET19 MODIFIED KEYWDS SIRTUIN, NAD-DEPENDENT PROTEIN DEACYLASE, INHIBITOR COMPLEX, KEYWDS 2 HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR S.MONIOT,C.STEEGBORN REVDAT 3 17-JAN-24 5MAR 1 HETSYN REVDAT 2 05-APR-17 5MAR 1 JRNL REVDAT 1 15-MAR-17 5MAR 0 JRNL AUTH S.MONIOT,M.FORGIONE,A.LUCIDI,G.S.HAILU,A.NEBBIOSO,V.CARAFA, JRNL AUTH 2 F.BARATTA,L.ALTUCCI,N.GIACCHE,D.PASSERI,R.PELLICCIARI,A.MAI, JRNL AUTH 3 C.STEEGBORN,D.ROTILI JRNL TITL DEVELOPMENT OF 1,2,4-OXADIAZOLES AS POTENT AND SELECTIVE JRNL TITL 2 INHIBITORS OF THE HUMAN DEACETYLASE SIRTUIN 2: JRNL TITL 3 STRUCTURE-ACTIVITY RELATIONSHIP, X-RAY CRYSTAL STRUCTURE, JRNL TITL 4 AND ANTICANCER ACTIVITY. JRNL REF J. MED. CHEM. V. 60 2344 2017 JRNL REFN ISSN 1520-4804 JRNL PMID 28240897 JRNL DOI 10.1021/ACS.JMEDCHEM.6B01609 REMARK 2 REMARK 2 RESOLUTION. 1.89 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.89 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.93 REMARK 3 MIN(FOBS/SIGMA_FOBS) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 103676 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.173 REMARK 3 FREE R VALUE : 0.194 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 5273 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : NULL REMARK 3 SHRINKAGE RADIUS : NULL REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 34.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 38.23 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5MAR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 04-NOV-16. REMARK 100 THE DEPOSITION ID IS D_1200002199. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-MAR-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9184 REMARK 200 MONOCHROMATOR : SI-111 CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 103676 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.890 REMARK 200 RESOLUTION RANGE LOW (A) : 48.930 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 7.300 REMARK 200 R MERGE (I) : 0.09000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 14.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.89 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.93 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.20 REMARK 200 R MERGE FOR SHELL (I) : 0.74100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3ZGV REMARK 200 REMARK 200 REMARK: BI-PYRAMIDAL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.74 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.45 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15-18 % PEG 10,000, 0.1M AMMONIUM REMARK 280 ACETATE, AND 0.1M BIS-TRIS PH 5.8, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 38.27850 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 56.91350 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 38.35450 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 56.91350 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 38.27850 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 38.35450 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 356 REMARK 465 SER B 356 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS A 54 CG ND1 CD2 CE1 NE2 REMARK 470 TYR A 139 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 TYR B 139 CG CD1 CD2 CE1 CE2 CZ OH REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 568 O HOH B 708 2.04 REMARK 500 OH TYR A 114 O HOH A 502 2.11 REMARK 500 O HOH B 609 O HOH B 648 2.13 REMARK 500 OE2 GLU A 323 O2 EDO A 405 2.13 REMARK 500 O HOH A 668 O HOH A 725 2.16 REMARK 500 O HOH A 656 O HOH A 703 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 736 O HOH B 722 4545 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 100 -49.71 74.37 REMARK 500 CYS A 200 -72.73 -101.93 REMARK 500 PHE A 214 11.77 -68.24 REMARK 500 ASP A 231 34.28 -77.49 REMARK 500 LYS A 253 42.50 -141.88 REMARK 500 TYR A 315 -10.02 -147.59 REMARK 500 ARG A 316 -5.99 -151.35 REMARK 500 SER B 100 -48.05 72.72 REMARK 500 ASN B 106 37.05 -141.18 REMARK 500 CYS B 200 -72.94 -125.73 REMARK 500 ASP B 231 36.63 -76.64 REMARK 500 ASP B 231 39.23 -76.64 REMARK 500 TYR B 315 -8.79 -143.10 REMARK 500 ARG B 316 -5.45 -152.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 195 SG REMARK 620 2 CYS A 200 SG 113.7 REMARK 620 3 CYS A 221 SG 116.4 100.0 REMARK 620 4 CYS A 224 SG 89.1 126.5 112.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 195 SG REMARK 620 2 CYS B 200 SG 111.0 REMARK 620 3 CYS B 221 SG 113.8 105.9 REMARK 620 4 CYS B 224 SG 94.2 117.7 114.1 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue AR6 A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 7KE A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DMS A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DMS A 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DMS A 408 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DMS A 409 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DMS A 410 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 411 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 412 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue AR6 B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 7KE B 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT B 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DMS B 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DMS B 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DMS B 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DMS B 408 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 409 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 410 DBREF 5MAR A 56 356 UNP Q8IXJ6 SIR2_HUMAN 56 356 DBREF 5MAR B 56 356 UNP Q8IXJ6 SIR2_HUMAN 56 356 SEQADV 5MAR HIS A 54 UNP Q8IXJ6 EXPRESSION TAG SEQADV 5MAR MET A 55 UNP Q8IXJ6 EXPRESSION TAG SEQADV 5MAR HIS B 54 UNP Q8IXJ6 EXPRESSION TAG SEQADV 5MAR MET B 55 UNP Q8IXJ6 EXPRESSION TAG SEQRES 1 A 303 HIS MET GLU ARG LEU LEU ASP GLU LEU THR LEU GLU GLY SEQRES 2 A 303 VAL ALA ARG TYR MET GLN SER GLU ARG CYS ARG ARG VAL SEQRES 3 A 303 ILE CYS LEU VAL GLY ALA GLY ILE SER THR SER ALA GLY SEQRES 4 A 303 ILE PRO ASP PHE ARG SER PRO SER THR GLY LEU TYR ASP SEQRES 5 A 303 ASN LEU GLU LYS TYR HIS LEU PRO TYR PRO GLU ALA ILE SEQRES 6 A 303 PHE GLU ILE SER TYR PHE LYS LYS HIS PRO GLU PRO PHE SEQRES 7 A 303 PHE ALA LEU ALA LYS GLU LEU TYR PRO GLY GLN PHE LYS SEQRES 8 A 303 PRO THR ILE CYS HIS TYR PHE MET ARG LEU LEU LYS ASP SEQRES 9 A 303 LYS GLY LEU LEU LEU ARG CYS TYR THR GLN ASN ILE ASP SEQRES 10 A 303 THR LEU GLU ARG ILE ALA GLY LEU GLU GLN GLU ASP LEU SEQRES 11 A 303 VAL GLU ALA HIS GLY THR PHE TYR THR SER HIS CYS VAL SEQRES 12 A 303 SER ALA SER CYS ARG HIS GLU TYR PRO LEU SER TRP MET SEQRES 13 A 303 LYS GLU LYS ILE PHE SER GLU VAL THR PRO LYS CYS GLU SEQRES 14 A 303 ASP CYS GLN SER LEU VAL LYS PRO ASP ILE VAL PHE PHE SEQRES 15 A 303 GLY GLU SER LEU PRO ALA ARG PHE PHE SER CYS MET GLN SEQRES 16 A 303 SER ASP PHE LEU LYS VAL ASP LEU LEU LEU VAL MET GLY SEQRES 17 A 303 THR SER LEU GLN VAL GLN PRO PHE ALA SER LEU ILE SER SEQRES 18 A 303 LYS ALA PRO LEU SER THR PRO ARG LEU LEU ILE ASN LYS SEQRES 19 A 303 GLU LYS ALA GLY GLN SER ASP PRO PHE LEU GLY MET ILE SEQRES 20 A 303 MET GLY LEU GLY GLY GLY MET ASP PHE ASP SER LYS LYS SEQRES 21 A 303 ALA TYR ARG ASP VAL ALA TRP LEU GLY GLU CYS ASP GLN SEQRES 22 A 303 GLY CYS LEU ALA LEU ALA GLU LEU LEU GLY TRP LYS LYS SEQRES 23 A 303 GLU LEU GLU ASP LEU VAL ARG ARG GLU HIS ALA SER ILE SEQRES 24 A 303 ASP ALA GLN SER SEQRES 1 B 303 HIS MET GLU ARG LEU LEU ASP GLU LEU THR LEU GLU GLY SEQRES 2 B 303 VAL ALA ARG TYR MET GLN SER GLU ARG CYS ARG ARG VAL SEQRES 3 B 303 ILE CYS LEU VAL GLY ALA GLY ILE SER THR SER ALA GLY SEQRES 4 B 303 ILE PRO ASP PHE ARG SER PRO SER THR GLY LEU TYR ASP SEQRES 5 B 303 ASN LEU GLU LYS TYR HIS LEU PRO TYR PRO GLU ALA ILE SEQRES 6 B 303 PHE GLU ILE SER TYR PHE LYS LYS HIS PRO GLU PRO PHE SEQRES 7 B 303 PHE ALA LEU ALA LYS GLU LEU TYR PRO GLY GLN PHE LYS SEQRES 8 B 303 PRO THR ILE CYS HIS TYR PHE MET ARG LEU LEU LYS ASP SEQRES 9 B 303 LYS GLY LEU LEU LEU ARG CYS TYR THR GLN ASN ILE ASP SEQRES 10 B 303 THR LEU GLU ARG ILE ALA GLY LEU GLU GLN GLU ASP LEU SEQRES 11 B 303 VAL GLU ALA HIS GLY THR PHE TYR THR SER HIS CYS VAL SEQRES 12 B 303 SER ALA SER CYS ARG HIS GLU TYR PRO LEU SER TRP MET SEQRES 13 B 303 LYS GLU LYS ILE PHE SER GLU VAL THR PRO LYS CYS GLU SEQRES 14 B 303 ASP CYS GLN SER LEU VAL LYS PRO ASP ILE VAL PHE PHE SEQRES 15 B 303 GLY GLU SER LEU PRO ALA ARG PHE PHE SER CYS MET GLN SEQRES 16 B 303 SER ASP PHE LEU LYS VAL ASP LEU LEU LEU VAL MET GLY SEQRES 17 B 303 THR SER LEU GLN VAL GLN PRO PHE ALA SER LEU ILE SER SEQRES 18 B 303 LYS ALA PRO LEU SER THR PRO ARG LEU LEU ILE ASN LYS SEQRES 19 B 303 GLU LYS ALA GLY GLN SER ASP PRO PHE LEU GLY MET ILE SEQRES 20 B 303 MET GLY LEU GLY GLY GLY MET ASP PHE ASP SER LYS LYS SEQRES 21 B 303 ALA TYR ARG ASP VAL ALA TRP LEU GLY GLU CYS ASP GLN SEQRES 22 B 303 GLY CYS LEU ALA LEU ALA GLU LEU LEU GLY TRP LYS LYS SEQRES 23 B 303 GLU LEU GLU ASP LEU VAL ARG ARG GLU HIS ALA SER ILE SEQRES 24 B 303 ASP ALA GLN SER HET ZN A 401 1 HET AR6 A 402 56 HET 7KE A 403 27 HET EDO A 404 10 HET EDO A 405 10 HET DMS A 406 10 HET DMS A 407 10 HET DMS A 408 10 HET DMS A 409 10 HET DMS A 410 10 HET GOL A 411 14 HET GOL A 412 14 HET ZN B 401 1 HET AR6 B 402 56 HET 7KE B 403 27 HET ACT B 404 7 HET DMS B 405 10 HET DMS B 406 10 HET DMS B 407 10 HET DMS B 408 10 HET GOL B 409 14 HET GOL B 410 14 HETNAM ZN ZINC ION HETNAM AR6 [(2R,3S,4R,5R)-5-(6-AMINOPURIN-9-YL)-3,4-DIHYDROXY- HETNAM 2 AR6 OXOLAN-2-YL]METHYL [HYDROXY-[[(2R,3S,4R,5S)-3,4,5- HETNAM 3 AR6 TRIHYDROXYOXOLAN-2-YL]METHOXY]PHOSPHORYL] HYDROGEN HETNAM 4 AR6 PHOSPHATE HETNAM 7KE 3-[3-(4-CHLOROPHENYL)-1,2,4-OXADIAZOL-5-YL]PROPAN-1-OL HETNAM EDO 1,2-ETHANEDIOL HETNAM DMS DIMETHYL SULFOXIDE HETNAM GOL GLYCEROL HETNAM ACT ACETATE ION HETSYN AR6 ADENOSINE-5-DIPHOSPHORIBOSE HETSYN EDO ETHYLENE GLYCOL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 ZN 2(ZN 2+) FORMUL 4 AR6 2(C15 H23 N5 O14 P2) FORMUL 5 7KE 2(C11 H11 CL N2 O2) FORMUL 6 EDO 2(C2 H6 O2) FORMUL 8 DMS 9(C2 H6 O S) FORMUL 13 GOL 4(C3 H8 O3) FORMUL 18 ACT C2 H3 O2 1- FORMUL 25 HOH *473(H2 O) HELIX 1 AA1 THR A 63 GLN A 72 1 10 HELIX 2 AA2 ALA A 85 GLY A 92 5 8 HELIX 3 AA3 GLY A 102 ASN A 106 5 5 HELIX 4 AA4 LEU A 107 HIS A 111 5 5 HELIX 5 AA5 TYR A 114 PHE A 119 5 6 HELIX 6 AA6 GLU A 120 HIS A 127 1 8 HELIX 7 AA7 PRO A 128 TYR A 139 1 12 HELIX 8 AA8 THR A 146 LYS A 158 1 13 HELIX 9 AA9 THR A 171 ALA A 176 1 6 HELIX 10 AB1 GLU A 179 GLU A 181 5 3 HELIX 11 AB2 LEU A 206 PHE A 214 1 9 HELIX 12 AB3 PRO A 240 PHE A 251 1 12 HELIX 13 AB4 PRO A 268 ALA A 270 5 3 HELIX 14 AB5 SER A 271 ALA A 276 1 6 HELIX 15 AB6 GLU A 323 GLY A 336 1 14 HELIX 16 AB7 TRP A 337 GLN A 355 1 19 HELIX 17 AB8 THR B 63 SER B 73 1 11 HELIX 18 AB9 ALA B 85 GLY B 92 5 8 HELIX 19 AC1 GLY B 102 ASN B 106 5 5 HELIX 20 AC2 LEU B 107 HIS B 111 5 5 HELIX 21 AC3 TYR B 114 PHE B 119 5 6 HELIX 22 AC4 GLU B 120 HIS B 127 1 8 HELIX 23 AC5 PRO B 128 TYR B 139 1 12 HELIX 24 AC6 THR B 146 LYS B 158 1 13 HELIX 25 AC7 THR B 171 ALA B 176 1 6 HELIX 26 AC8 GLU B 179 GLU B 181 5 3 HELIX 27 AC9 LEU B 206 SER B 215 1 10 HELIX 28 AD1 PRO B 240 PHE B 251 1 12 HELIX 29 AD2 PRO B 268 ALA B 276 5 9 HELIX 30 AD3 GLU B 323 GLY B 336 1 14 HELIX 31 AD4 TRP B 337 GLN B 355 1 19 SHEET 1 AA1 6 LEU A 183 GLU A 185 0 SHEET 2 AA1 6 LEU A 161 THR A 166 1 N CYS A 164 O VAL A 184 SHEET 3 AA1 6 VAL A 79 VAL A 83 1 N CYS A 81 O TYR A 165 SHEET 4 AA1 6 LEU A 256 MET A 260 1 O LEU A 258 N ILE A 80 SHEET 5 AA1 6 ARG A 282 ASN A 286 1 O LEU A 283 N VAL A 259 SHEET 6 AA1 6 ASP A 317 LEU A 321 1 O VAL A 318 N LEU A 284 SHEET 1 AA2 3 GLU A 203 PRO A 205 0 SHEET 2 AA2 3 GLY A 188 CYS A 195 -1 N SER A 193 O TYR A 204 SHEET 3 AA2 3 VAL A 228 ILE A 232 -1 O ASP A 231 N THR A 192 SHEET 1 AA3 6 LEU B 183 GLU B 185 0 SHEET 2 AA3 6 LEU B 161 THR B 166 1 N CYS B 164 O VAL B 184 SHEET 3 AA3 6 VAL B 79 VAL B 83 1 N CYS B 81 O TYR B 165 SHEET 4 AA3 6 LEU B 256 MET B 260 1 O LEU B 258 N ILE B 80 SHEET 5 AA3 6 ARG B 282 ASN B 286 1 O LEU B 283 N VAL B 259 SHEET 6 AA3 6 ASP B 317 LEU B 321 1 O VAL B 318 N LEU B 284 SHEET 1 AA4 3 GLU B 203 PRO B 205 0 SHEET 2 AA4 3 GLY B 188 CYS B 195 -1 N SER B 193 O TYR B 204 SHEET 3 AA4 3 VAL B 228 ILE B 232 -1 O ASP B 231 N THR B 192 LINK SG CYS A 195 ZN ZN A 401 1555 1555 2.42 LINK SG CYS A 200 ZN ZN A 401 1555 1555 2.27 LINK SG CYS A 221 ZN ZN A 401 1555 1555 2.34 LINK SG CYS A 224 ZN ZN A 401 1555 1555 2.39 LINK SG CYS B 195 ZN ZN B 401 1555 1555 2.35 LINK SG CYS B 200 ZN ZN B 401 1555 1555 2.29 LINK SG CYS B 221 ZN ZN B 401 1555 1555 2.37 LINK SG CYS B 224 ZN ZN B 401 1555 1555 2.34 CISPEP 1 GLN A 267 PRO A 268 0 0.69 CISPEP 2 GLN B 267 PRO B 268 0 2.53 SITE 1 AC1 4 CYS A 195 CYS A 200 CYS A 221 CYS A 224 SITE 1 AC2 27 GLY A 84 ALA A 85 GLY A 86 THR A 89 SITE 2 AC2 27 ASP A 95 PHE A 96 ARG A 97 TYR A 104 SITE 3 AC2 27 GLN A 167 HIS A 187 PHE A 235 GLY A 261 SITE 4 AC2 27 THR A 262 SER A 263 VAL A 266 ASN A 286 SITE 5 AC2 27 LYS A 287 GLU A 288 GLY A 322 GLU A 323 SITE 6 AC2 27 CYS A 324 7KE A 403 EDO A 405 HOH A 535 SITE 7 AC2 27 HOH A 545 HOH A 554 HOH A 606 SITE 1 AC3 9 PHE A 96 PHE A 119 LEU A 134 LEU A 138 SITE 2 AC3 9 ILE A 169 ILE A 232 VAL A 233 AR6 A 402 SITE 3 AC3 9 LEU B 297 SITE 1 AC4 2 SER A 311 ALA A 314 SITE 1 AC5 5 THR A 89 SER A 90 LYS A 287 GLU A 323 SITE 2 AC5 5 AR6 A 402 SITE 1 AC6 2 TRP A 320 LEU A 321 SITE 1 AC7 4 PHE A 96 ASN A 168 ILE A 169 ASP A 170 SITE 1 AC8 5 ARG A 77 ARG A 78 GLY A 159 LEU A 161 SITE 2 AC8 5 LEU A 162 SITE 1 AC9 4 LEU A 162 ARG A 163 GLU A 181 ASP A 182 SITE 1 AD1 3 ARG A 75 TYR A 104 ASP A 105 SITE 1 AD2 9 GLY A 291 SER A 293 MET A 299 MET A 301 SITE 2 AD2 9 GLY A 302 GLY A 304 GLY A 305 GLY A 306 SITE 3 AD2 9 HOH A 559 SITE 1 AD3 5 ARG A 153 GLU A 348 SER A 351 HOH A 507 SITE 2 AD3 5 CYS B 224 SITE 1 AD4 4 CYS B 195 CYS B 200 CYS B 221 CYS B 224 SITE 1 AD5 25 GLY B 84 ALA B 85 GLY B 86 THR B 89 SITE 2 AD5 25 ASP B 95 PHE B 96 ARG B 97 TYR B 104 SITE 3 AD5 25 GLN B 167 HIS B 187 PHE B 235 GLY B 261 SITE 4 AD5 25 THR B 262 SER B 263 VAL B 266 ASN B 286 SITE 5 AD5 25 LYS B 287 GLU B 288 GLY B 322 GLU B 323 SITE 6 AD5 25 CYS B 324 7KE B 403 HOH B 533 HOH B 547 SITE 7 AD5 25 HOH B 548 SITE 1 AD6 8 PHE B 96 PHE B 119 LEU B 134 LEU B 138 SITE 2 AD6 8 ILE B 169 ILE B 232 VAL B 233 AR6 B 402 SITE 1 AD7 3 ALA B 319 TRP B 320 LEU B 321 SITE 1 AD8 4 PHE B 96 ASN B 168 ILE B 169 ASP B 170 SITE 1 AD9 3 ARG B 77 GLY B 159 LEU B 161 SITE 1 AE1 4 LEU B 162 ARG B 163 GLU B 181 ASP B 182 SITE 1 AE2 4 HOH A 556 HOH A 701 TYR B 114 GOL B 409 SITE 1 AE3 2 GLU B 116 DMS B 408 SITE 1 AE4 9 SER A 73 GLU A 74 CYS A 76 ARG A 77 SITE 2 AE4 9 SER B 122 TYR B 123 LYS B 126 HOH B 558 SITE 3 AE4 9 HOH B 598 CRYST1 76.557 76.709 113.827 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013062 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013036 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008785 0.00000