HEADER SUGAR BINDING PROTEIN 07-NOV-16 5MB1 TITLE STRUCTURE OF THE LECB LECTIN FROM PSEUDOMONAS AERUGINOSA STRAIN PA14 TITLE 2 IN COMPLEX WITH 2,4,6-TRIMETHYLPHENYLSULFONAMIDE-N-METHYL-L- TITLE 3 FUCOPYRANOSIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: FUCOSE-BINDING LECTIN PA-IIL; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: UNP RESIDUES 2-115; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA (STRAIN UCBPP-PA14); SOURCE 3 ORGANISM_TAXID: 208963; SOURCE 4 GENE: LECB, PA14_20610; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PET22B; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PRS01.4 KEYWDS SUGAR BINDING PROTEIN, LECTIN, LECB, PSEUDOMONAS AERUGINOSA PA14, KEYWDS 2 GLYCOINHIBITORS EXPDTA X-RAY DIFFRACTION AUTHOR R.SOMMER,A.IMBERTY,A.TITZ,A.VARROT REVDAT 4 17-JAN-24 5MB1 1 HETSYN LINK REVDAT 3 29-JUL-20 5MB1 1 COMPND REMARK HETNAM LINK REVDAT 3 2 1 SITE REVDAT 2 14-MAR-18 5MB1 1 JRNL REVDAT 1 20-DEC-17 5MB1 0 JRNL AUTH R.SOMMER,S.WAGNER,K.ROX,A.VARROT,D.HAUCK,E.C.WAMHOFF, JRNL AUTH 2 J.SCHREIBER,T.RYCKMANS,T.BRUNNER,C.RADEMACHER,R.W.HARTMANN, JRNL AUTH 3 M.BRONSTRUP,A.IMBERTY,A.TITZ JRNL TITL GLYCOMIMETIC, ORALLY BIOAVAILABLE LECB INHIBITORS BLOCK JRNL TITL 2 BIOFILM FORMATION OF PSEUDOMONAS AERUGINOSA. JRNL REF J. AM. CHEM. SOC. V. 140 2537 2018 JRNL REFN ESSN 1520-5126 JRNL PMID 29272578 JRNL DOI 10.1021/JACS.7B11133 REMARK 2 REMARK 2 RESOLUTION. 1.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0155 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.83 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 3 NUMBER OF REFLECTIONS : 43249 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.133 REMARK 3 R VALUE (WORKING SET) : 0.132 REMARK 3 FREE R VALUE : 0.155 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2271 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.65 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.69 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3150 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.46 REMARK 3 BIN R VALUE (WORKING SET) : 0.1710 REMARK 3 BIN FREE R VALUE SET COUNT : 168 REMARK 3 BIN FREE R VALUE : 0.2160 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3280 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 92 REMARK 3 SOLVENT ATOMS : 655 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 9.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 9.17 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.53000 REMARK 3 B22 (A**2) : -0.46000 REMARK 3 B33 (A**2) : -0.07000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.089 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.082 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.048 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.406 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.968 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.963 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3597 ; 0.016 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 3339 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4955 ; 1.733 ; 1.944 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7626 ; 0.993 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 488 ; 6.581 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 157 ;47.903 ;27.898 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 506 ;10.814 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 2 ;17.600 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 615 ; 0.112 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4374 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 816 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1925 ; 0.760 ; 0.734 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1924 ; 0.755 ; 0.734 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2422 ; 1.247 ; 1.096 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2423 ; 1.247 ; 1.096 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1672 ; 1.403 ; 0.892 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1670 ; 1.399 ; 0.891 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2533 ; 2.103 ; 1.296 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 4000 ; 4.303 ;10.909 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 3824 ; 3.831 ; 9.944 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 6 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 1 114 B 1 114 6902 0.07 0.05 REMARK 3 2 A 1 114 C 1 114 6606 0.11 0.05 REMARK 3 3 A 1 114 D 1 114 6772 0.08 0.05 REMARK 3 4 B 1 114 C 1 114 6608 0.11 0.05 REMARK 3 5 B 1 114 D 1 114 6738 0.08 0.05 REMARK 3 6 C 1 114 D 1 114 6660 0.08 0.05 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5MB1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 07-NOV-16. REMARK 100 THE DEPOSITION ID IS D_1200002189. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-APR-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM30A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9205 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS 2014 REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.5.24 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 45572 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.650 REMARK 200 RESOLUTION RANGE LOW (A) : 41.830 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 200 DATA REDUNDANCY : 4.300 REMARK 200 R MERGE (I) : 0.05600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.68 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.6 REMARK 200 DATA REDUNDANCY IN SHELL : 4.30 REMARK 200 R MERGE FOR SHELL (I) : 0.30000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.6.1 REMARK 200 STARTING MODEL: 5A6Q REMARK 200 REMARK 200 REMARK: PLATES REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.43 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.06 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 6K 0.5M LICL 0.1 M CITRIC ACID REMARK 280 PH 4.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 26.45200 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 54.49350 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 32.62550 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 54.49350 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 26.45200 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 32.62550 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9700 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15250 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -123.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG C 72 CG CD NE CZ NH1 NH2 REMARK 470 GLU C 86 OE1 REMARK 470 ARG D 72 CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 SER D 52 CB SER D 52 OG 0.082 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 86 -39.14 -149.69 REMARK 500 SER A 97 -137.85 -148.67 REMARK 500 GLU B 86 -32.20 -151.32 REMARK 500 SER B 97 -138.63 -143.70 REMARK 500 TYR B 102 19.52 58.63 REMARK 500 GLU C 86 -29.48 -152.91 REMARK 500 GLU D 86 -27.59 -149.63 REMARK 500 GLU D 86 -27.76 -150.37 REMARK 500 SER D 97 -139.41 -143.79 REMARK 500 TYR D 102 14.57 55.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 481 DISTANCE = 7.13 ANGSTROMS REMARK 525 HOH C 448 DISTANCE = 6.14 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 202 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 21 O REMARK 620 2 ASP A 101 OD1 145.6 REMARK 620 3 ASP A 101 OD2 153.5 45.1 REMARK 620 4 ASN A 103 OD1 88.5 69.6 74.2 REMARK 620 5 ASP A 104 OD1 83.1 70.2 115.3 87.7 REMARK 620 6 FUL A 203 O3 133.5 61.6 71.8 131.2 76.7 REMARK 620 7 FUL A 203 O4 77.6 127.9 114.3 162.0 101.7 66.5 REMARK 620 8 GLY B 114 O 80.3 122.9 79.0 87.1 162.7 118.7 79.4 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 201 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 95 OE1 REMARK 620 2 GLU A 95 OE2 53.5 REMARK 620 3 ASP A 99 OD1 86.6 82.0 REMARK 620 4 ASP A 101 OD1 77.1 130.0 87.6 REMARK 620 5 ASP A 104 OD1 117.6 127.6 148.8 79.7 REMARK 620 6 ASP A 104 OD2 83.3 78.1 160.1 106.7 50.1 REMARK 620 7 FUL A 203 O2 142.3 89.0 93.4 140.6 79.3 84.2 REMARK 620 8 FUL A 203 O3 147.3 146.7 76.3 74.6 72.8 120.3 67.5 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 202 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY A 114 O REMARK 620 2 ASN B 21 O 79.1 REMARK 620 3 ASP B 101 OD1 123.8 145.9 REMARK 620 4 ASP B 101 OD2 79.9 153.6 45.2 REMARK 620 5 ASN B 103 OD1 87.0 88.5 69.8 74.6 REMARK 620 6 ASP B 104 OD1 161.1 82.4 71.4 116.5 88.7 REMARK 620 7 FUL B 203 O3 120.7 133.2 61.0 72.0 130.8 75.4 REMARK 620 8 FUL B 203 O4 77.6 79.2 127.1 111.6 161.8 102.7 66.7 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 201 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 95 OE1 REMARK 620 2 GLU B 95 OE2 55.1 REMARK 620 3 ASP B 99 OD1 85.9 79.0 REMARK 620 4 ASP B 101 OD1 76.4 130.5 89.0 REMARK 620 5 ASP B 104 OD1 118.5 130.2 148.7 79.2 REMARK 620 6 ASP B 104 OD2 86.0 80.1 158.6 108.2 50.6 REMARK 620 7 FUL B 203 O3 146.3 144.5 76.7 74.6 72.3 119.4 REMARK 620 8 FUL B 203 O2 141.9 87.2 92.7 141.7 79.8 81.7 68.6 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA C 201 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN C 21 O REMARK 620 2 ASP C 99 OD2 152.3 REMARK 620 3 ASN C 103 OD1 98.3 109.3 REMARK 620 4 ASP C 104 OD1 87.3 94.0 90.4 REMARK 620 5 GLY D 114 O 88.7 89.8 89.5 176.0 REMARK 620 6 HOH D 306 O 87.9 64.7 166.2 102.2 78.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA D 202 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY C 114 O REMARK 620 2 HOH C 301 O 71.5 REMARK 620 3 ASN D 21 O 79.1 85.2 REMARK 620 4 ASP D 99 OD2 97.8 73.0 157.7 REMARK 620 5 ASP D 101 OD2 81.3 104.2 154.2 42.4 REMARK 620 6 ASN D 103 OD1 88.7 160.1 92.8 109.3 70.1 REMARK 620 7 ASP D 104 OD1 165.8 109.0 86.8 95.7 111.7 90.6 REMARK 620 8 FUL D 203 O4 77.3 9.7 78.5 79.3 113.2 164.6 101.4 REMARK 620 9 FUL D 203 O3 114.7 62.6 135.3 27.3 68.8 128.0 76.5 65.1 REMARK 620 N 1 2 3 4 5 6 7 8 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA D 201 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU D 95 OE1 REMARK 620 2 GLU D 95 OE2 52.6 REMARK 620 3 ASP D 99 OD1 76.8 89.1 REMARK 620 4 ASP D 99 OD2 153.5 128.4 76.7 REMARK 620 5 ASP D 101 O 80.8 32.2 113.1 111.4 REMARK 620 6 ASP D 101 OD1 125.7 75.1 89.9 55.8 56.5 REMARK 620 7 ASP D 104 OD1 130.8 114.4 150.8 75.0 84.3 80.5 REMARK 620 8 ASP D 104 OD2 79.1 82.9 154.5 126.7 70.8 111.2 51.7 REMARK 620 9 FUL D 203 O2 88.7 140.4 90.1 89.7 151.2 144.5 82.4 81.0 REMARK 620 N 1 2 3 4 5 6 7 8 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5A6Q RELATED DB: PDB REMARK 900 APOPROTEIN DBREF1 5MB1 A 1 114 UNP A0A0H2ZE85_PSEAB DBREF2 5MB1 A A0A0H2ZE85 2 115 DBREF1 5MB1 B 1 114 UNP A0A0H2ZE85_PSEAB DBREF2 5MB1 B A0A0H2ZE85 2 115 DBREF1 5MB1 C 1 114 UNP A0A0H2ZE85_PSEAB DBREF2 5MB1 C A0A0H2ZE85 2 115 DBREF1 5MB1 D 1 114 UNP A0A0H2ZE85_PSEAB DBREF2 5MB1 D A0A0H2ZE85 2 115 SEQRES 1 A 114 ALA THR GLN GLY VAL PHE THR LEU PRO ALA ASN THR GLN SEQRES 2 A 114 PHE GLY VAL THR ALA PHE ALA ASN SER ALA GLY THR GLN SEQRES 3 A 114 THR VAL ASN VAL GLN VAL ASN ASN GLU THR VAL ALA THR SEQRES 4 A 114 PHE THR GLY GLN SER THR ASN ASN ALA ILE ILE GLY SER SEQRES 5 A 114 LYS VAL LEU ASN SER GLY GLY GLY GLY LYS VAL GLN ILE SEQRES 6 A 114 LEU VAL SER VAL ASN GLY ARG SER SER ASP LEU VAL SER SEQRES 7 A 114 ALA GLN VAL ILE LEU ALA ASN GLU LEU ASN PHE ALA LEU SEQRES 8 A 114 VAL GLY SER GLU ASP SER THR ASP ASN ASP TYR ASN ASP SEQRES 9 A 114 ALA VAL VAL VAL ILE ASN TRP PRO LEU GLY SEQRES 1 B 114 ALA THR GLN GLY VAL PHE THR LEU PRO ALA ASN THR GLN SEQRES 2 B 114 PHE GLY VAL THR ALA PHE ALA ASN SER ALA GLY THR GLN SEQRES 3 B 114 THR VAL ASN VAL GLN VAL ASN ASN GLU THR VAL ALA THR SEQRES 4 B 114 PHE THR GLY GLN SER THR ASN ASN ALA ILE ILE GLY SER SEQRES 5 B 114 LYS VAL LEU ASN SER GLY GLY GLY GLY LYS VAL GLN ILE SEQRES 6 B 114 LEU VAL SER VAL ASN GLY ARG SER SER ASP LEU VAL SER SEQRES 7 B 114 ALA GLN VAL ILE LEU ALA ASN GLU LEU ASN PHE ALA LEU SEQRES 8 B 114 VAL GLY SER GLU ASP SER THR ASP ASN ASP TYR ASN ASP SEQRES 9 B 114 ALA VAL VAL VAL ILE ASN TRP PRO LEU GLY SEQRES 1 C 114 ALA THR GLN GLY VAL PHE THR LEU PRO ALA ASN THR GLN SEQRES 2 C 114 PHE GLY VAL THR ALA PHE ALA ASN SER ALA GLY THR GLN SEQRES 3 C 114 THR VAL ASN VAL GLN VAL ASN ASN GLU THR VAL ALA THR SEQRES 4 C 114 PHE THR GLY GLN SER THR ASN ASN ALA ILE ILE GLY SER SEQRES 5 C 114 LYS VAL LEU ASN SER GLY GLY GLY GLY LYS VAL GLN ILE SEQRES 6 C 114 LEU VAL SER VAL ASN GLY ARG SER SER ASP LEU VAL SER SEQRES 7 C 114 ALA GLN VAL ILE LEU ALA ASN GLU LEU ASN PHE ALA LEU SEQRES 8 C 114 VAL GLY SER GLU ASP SER THR ASP ASN ASP TYR ASN ASP SEQRES 9 C 114 ALA VAL VAL VAL ILE ASN TRP PRO LEU GLY SEQRES 1 D 114 ALA THR GLN GLY VAL PHE THR LEU PRO ALA ASN THR GLN SEQRES 2 D 114 PHE GLY VAL THR ALA PHE ALA ASN SER ALA GLY THR GLN SEQRES 3 D 114 THR VAL ASN VAL GLN VAL ASN ASN GLU THR VAL ALA THR SEQRES 4 D 114 PHE THR GLY GLN SER THR ASN ASN ALA ILE ILE GLY SER SEQRES 5 D 114 LYS VAL LEU ASN SER GLY GLY GLY GLY LYS VAL GLN ILE SEQRES 6 D 114 LEU VAL SER VAL ASN GLY ARG SER SER ASP LEU VAL SER SEQRES 7 D 114 ALA GLN VAL ILE LEU ALA ASN GLU LEU ASN PHE ALA LEU SEQRES 8 D 114 VAL GLY SER GLU ASP SER THR ASP ASN ASP TYR ASN ASP SEQRES 9 D 114 ALA VAL VAL VAL ILE ASN TRP PRO LEU GLY HET CA A 201 1 HET CA A 202 1 HET FUL A 203 10 HET 7KT A 204 14 HET CA B 201 1 HET CA B 202 1 HET FUL B 203 10 HET 7KT B 204 14 HET CA C 201 1 HET CA D 201 1 HET CA D 202 1 HET FUL D 203 10 HET 7KT D 204 14 HET FLC D 205 13 HETNAM CA CALCIUM ION HETNAM FUL BETA-L-FUCOPYRANOSE HETNAM 7KT ~{N},2,4,6-TETRAMETHYLBENZENESULFONAMIDE HETNAM FLC CITRATE ANION HETSYN FUL BETA-L-FUCOSE; 6-DEOXY-BETA-L-GALACTOPYRANOSE; L- HETSYN 2 FUL FUCOSE; FUCOSE; 6-DEOXY-BETA-L-GALACTOSE FORMUL 5 CA 7(CA 2+) FORMUL 7 FUL 3(C6 H12 O5) FORMUL 8 7KT 3(C10 H15 N O2 S) FORMUL 18 FLC C6 H5 O7 3- FORMUL 19 HOH *655(H2 O) SHEET 1 A 4 VAL A 5 THR A 7 0 SHEET 2 A 4 LYS A 62 SER A 68 -1 SHEET 3 A 4 GLN A 26 VAL A 32 -1 SHEET 4 A 4 GLU A 35 GLY A 42 -1 SHEET 1 B 5 ASP A 75 LEU A 83 0 SHEET 2 B 5 LEU A 87 GLU A 95 -1 SHEET 3 B 5 ALA A 105 TRP A 111 -1 SHEET 4 B 5 GLN A 13 ALA A 20 -1 SHEET 5 B 5 ALA A 48 ASN A 56 -1 SHEET 1 C 4 VAL B 5 THR B 7 0 SHEET 2 C 4 LYS B 62 VAL B 69 -1 SHEET 3 C 4 GLN B 26 VAL B 32 -1 SHEET 4 C 4 GLU B 35 GLY B 42 -1 SHEET 1 D 5 ASP B 75 LEU B 83 0 SHEET 2 D 5 LEU B 87 GLU B 95 -1 SHEET 3 D 5 ALA B 105 TRP B 111 -1 SHEET 4 D 5 GLN B 13 ALA B 20 -1 SHEET 5 D 5 ALA B 48 ASN B 56 -1 SHEET 1 E 4 VAL C 5 THR C 7 0 SHEET 2 E 4 LYS C 62 VAL C 69 -1 SHEET 3 E 4 GLN C 26 VAL C 32 -1 SHEET 4 E 4 GLU C 35 GLY C 42 -1 SHEET 1 F 5 ASP C 75 LEU C 83 0 SHEET 2 F 5 LEU C 87 GLU C 95 -1 SHEET 3 F 5 ALA C 105 TRP C 111 -1 SHEET 4 F 5 GLN C 13 ALA C 20 -1 SHEET 5 F 5 ALA C 48 ASN C 56 -1 SHEET 1 G 4 VAL D 5 THR D 7 0 SHEET 2 G 4 LYS D 62 VAL D 69 -1 SHEET 3 G 4 GLN D 26 VAL D 32 -1 SHEET 4 G 4 GLU D 35 GLY D 42 -1 SHEET 1 H 5 ASP D 75 LEU D 83 0 SHEET 2 H 5 LEU D 87 GLU D 95 -1 SHEET 3 H 5 ALA D 105 TRP D 111 -1 SHEET 4 H 5 GLN D 13 ALA D 20 -1 SHEET 5 H 5 ALA D 48 ASN D 56 -1 LINK C1 FUL A 203 C1 7KT A 204 1555 1555 1.55 LINK C1 FUL B 203 C1 7KT B 204 1555 1555 1.54 LINK CB BTHR D 98 C1 7KT D 204 1555 1555 1.31 LINK CG2BTHR D 98 C4 7KT D 204 1555 1555 1.61 LINK CG2BTHR D 98 C2 7KT D 204 1555 1555 1.22 LINK N BASP D 99 O2 FUL D 203 1555 1555 1.41 LINK CB BASP D 99 C2 FUL D 203 1555 1555 1.63 LINK CB BASP D 99 O3 FUL D 203 1555 1555 1.28 LINK C1 FUL D 203 C1 7KT D 204 1555 1555 1.52 LINK O ASN A 21 CA CA A 202 1555 1555 2.33 LINK OE1 GLU A 95 CA CA A 201 1555 1555 2.52 LINK OE2 GLU A 95 CA CA A 201 1555 1555 2.41 LINK OD1 ASP A 99 CA CA A 201 1555 1555 2.35 LINK OD1 ASP A 101 CA CA A 201 1555 1555 2.36 LINK OD1 ASP A 101 CA CA A 202 1555 1555 3.11 LINK OD2 ASP A 101 CA CA A 202 1555 1555 2.43 LINK OD1 ASN A 103 CA CA A 202 1555 1555 2.36 LINK OD1 ASP A 104 CA CA A 201 1555 1555 2.65 LINK OD2 ASP A 104 CA CA A 201 1555 1555 2.39 LINK OD1 ASP A 104 CA CA A 202 1555 1555 2.40 LINK O GLY A 114 CA CA B 202 1555 1555 2.45 LINK CA CA A 201 O2 FUL A 203 1555 1555 2.54 LINK CA CA A 201 O3 FUL A 203 1555 1555 2.44 LINK CA CA A 202 O3 FUL A 203 1555 1555 2.49 LINK CA CA A 202 O4 FUL A 203 1555 1555 2.50 LINK CA CA A 202 O GLY B 114 1555 1555 2.40 LINK O ASN B 21 CA CA B 202 1555 1555 2.39 LINK OE1 GLU B 95 CA CA B 201 1555 1555 2.50 LINK OE2 GLU B 95 CA CA B 201 1555 1555 2.39 LINK OD1 ASP B 99 CA CA B 201 1555 1555 2.41 LINK OD1 ASP B 101 CA CA B 201 1555 1555 2.40 LINK OD1 ASP B 101 CA CA B 202 1555 1555 3.11 LINK OD2 ASP B 101 CA CA B 202 1555 1555 2.44 LINK OD1 ASN B 103 CA CA B 202 1555 1555 2.33 LINK OD1 ASP B 104 CA CA B 201 1555 1555 2.66 LINK OD2 ASP B 104 CA CA B 201 1555 1555 2.37 LINK OD1 ASP B 104 CA CA B 202 1555 1555 2.34 LINK CA CA B 201 O3 FUL B 203 1555 1555 2.39 LINK CA CA B 201 O2 FUL B 203 1555 1555 2.53 LINK CA CA B 202 O3 FUL B 203 1555 1555 2.55 LINK CA CA B 202 O4 FUL B 203 1555 1555 2.51 LINK O ASN C 21 CA CA C 201 1555 1555 2.26 LINK OD2 ASP C 99 CA CA C 201 1555 1555 2.32 LINK OD1 ASN C 103 CA CA C 201 1555 1555 2.31 LINK OD1 ASP C 104 CA CA C 201 1555 1555 2.41 LINK O GLY C 114 CA CA D 202 1555 1555 2.55 LINK CA CA C 201 O GLY D 114 1555 1555 2.55 LINK CA CA C 201 O HOH D 306 1555 1555 2.55 LINK O HOH C 301 CA CA D 202 1555 1555 2.62 LINK O ASN D 21 CA CA D 202 1555 1555 2.34 LINK OE1AGLU D 95 CA CA D 201 1555 1555 2.44 LINK OE2AGLU D 95 CA CA D 201 1555 1555 2.57 LINK OD1AASP D 99 CA CA D 201 1555 1555 2.36 LINK OD2BASP D 99 CA CA D 201 1555 1555 3.05 LINK OD2BASP D 99 CA CA D 202 1555 1555 2.29 LINK O BASP D 101 CA CA D 201 1555 1555 2.91 LINK OD1AASP D 101 CA CA D 201 1555 1555 2.39 LINK OD2AASP D 101 CA CA D 202 1555 1555 2.57 LINK OD1 ASN D 103 CA CA D 202 1555 1555 2.34 LINK OD1 ASP D 104 CA CA D 201 1555 1555 2.56 LINK OD2 ASP D 104 CA CA D 201 1555 1555 2.36 LINK OD1 ASP D 104 CA CA D 202 1555 1555 2.35 LINK CA CA D 201 O2 FUL D 203 1555 1555 2.53 LINK CA CA D 201 O3 FUL D 203 1555 1555 2.54 LINK CA CA D 202 O4 FUL D 203 1555 1555 2.46 LINK CA CA D 202 O3 FUL D 203 1555 1555 2.62 CISPEP 1 TRP A 111 PRO A 112 0 -7.03 CISPEP 2 TRP B 111 PRO B 112 0 -9.05 CISPEP 3 TRP C 111 PRO C 112 0 -6.35 CISPEP 4 TRP D 111 PRO D 112 0 -6.05 CRYST1 52.904 65.251 108.987 90.00 90.00 90.00 P 21 21 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018902 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015325 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009175 0.00000