HEADER HYDROLASE 08-NOV-16 5MBL TITLE CATHEPSIN B IN COMPLEX WITH DARPIN 81 COMPND MOL_ID: 1; COMPND 2 MOLECULE: CATHEPSIN B; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: APP SECRETASE,APPS,CATHEPSIN B1; COMPND 5 EC: 3.4.22.1; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: DARPIN 81; COMPND 9 CHAIN: B; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CTSB, CPSB; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 10 ORGANISM_TAXID: 32630; SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PROTEASE, DARPIN, COMPLEX, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR D.TURK,L.KRAMER,M.RENKO,B.TURK REVDAT 2 01-MAY-24 5MBL 1 REMARK REVDAT 1 20-DEC-17 5MBL 0 JRNL AUTH D.TURK,L.KRAMER JRNL TITL CATHEPSIN B IN COMPLEX WITH DARPIN 81 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.81 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : MAIN 2016 REMARK 3 AUTHORS : TURK REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.81 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.10 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 48409 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NONE REMARK 3 FREE R VALUE TEST SET SELECTION : ALL REMARK 3 R VALUE (WORKING SET) : 0.170 REMARK 3 FREE R VALUE : 0.193 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 100.00 REMARK 3 FREE R VALUE TEST SET COUNT : 48409 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.81 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.84 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 1.00 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2370 REMARK 3 BIN R VALUE (WORKING SET) : 0.2566 REMARK 3 BIN FREE R VALUE : 0.2887 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 100.0 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 2370 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3174 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 5 REMARK 3 SOLVENT ATOMS : 541 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.19100 REMARK 3 B22 (A**2) : 1.19100 REMARK 3 B33 (A**2) : -2.38100 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : NULL REMARK 3 BOND ANGLES (DEGREES) : NULL REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5MBL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 08-NOV-16. REMARK 100 THE DEPOSITION ID IS D_1200001751. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-JAN-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.918007 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS 2014 REMARK 200 DATA SCALING SOFTWARE : XDS 2014 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 48460 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.810 REMARK 200 RESOLUTION RANGE LOW (A) : 29.100 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 13.00 REMARK 200 R MERGE (I) : 0.06600 REMARK 200 R SYM (I) : 0.06500 REMARK 200 FOR THE DATA SET : 26.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.81 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.92 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 13.40 REMARK 200 R MERGE FOR SHELL (I) : 0.60000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.020 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: CATHEPSIN B AND ANKIRIN REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.13 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.87 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: BUFFER: 50MM TRIS/HCL, 300MM NACL, REMARK 280 0.05% TWEEN-20 PRECIPITANT: 0.1M MES, 1.8M NH4SO4, PH 7.4, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 42 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 52.89500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 52.89500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 46.30500 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 52.89500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 52.89500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 46.30500 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 52.89500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 52.89500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 46.30500 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 52.89500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 52.89500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 46.30500 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1900 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17500 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -13.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 566 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LEU A 0 REMARK 465 MET B 251 REMARK 465 ARG B 252 REMARK 465 GLY B 253 REMARK 465 SER B 254 REMARK 465 HIS B 255 REMARK 465 ASN B 421 REMARK 475 REMARK 475 ZERO OCCUPANCY RESIDUES REMARK 475 THE FOLLOWING RESIDUES WERE MODELED WITH ZERO OCCUPANCY. REMARK 475 THE LOCATION AND PROPERTIES OF THESE RESIDUES MAY NOT REMARK 475 BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 475 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE) REMARK 475 M RES C SSEQI REMARK 475 LEU B 420 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LYS A 1 CD CE NZ REMARK 480 LYS A 128 CG CD CE NZ REMARK 480 LYS B 419 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NZ LYS B 419 O HOH B 601 1.85 REMARK 500 O HOH A 305 O HOH A 631 2.13 REMARK 500 O HOH A 366 O HOH A 527 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ARG A 86 CA ARG A 86 CB -0.158 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 22 CB - CG - CD ANGL. DEV. = 19.5 DEGREES REMARK 500 ARG A 22 CG - CD - NE ANGL. DEV. = -17.8 DEGREES REMARK 500 ARG A 22 CD - NE - CZ ANGL. DEV. = 9.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 121 -164.25 -114.47 REMARK 500 THR A 121 -158.61 -114.47 REMARK 500 PRO A 139 -171.61 -62.66 REMARK 500 LYS A 185 -39.65 -130.26 REMARK 500 ASN A 223 178.34 73.71 REMARK 500 CYS A 241 18.81 57.86 REMARK 500 HIS B 259 51.27 -171.90 REMARK 500 ASN B 306 49.34 -81.61 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 655 DISTANCE = 5.84 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 501 DBREF 5MBL A 0 255 UNP P07858 CATB_HUMAN 78 333 DBREF 5MBL B 251 421 PDB 5MBL 5MBL 251 421 SEQRES 1 A 256 LEU LYS LEU PRO ALA SER PHE ASP ALA ARG GLU GLN TRP SEQRES 2 A 256 PRO GLN CYS PRO THR ILE LYS GLU ILE ARG ASP GLN GLY SEQRES 3 A 256 SER CYS GLY SER SCH TRP ALA PHE GLY ALA VAL GLU ALA SEQRES 4 A 256 ILE SER ASP ARG ILE CYS ILE HIS THR ASN ALA HIS VAL SEQRES 5 A 256 SER VAL GLU VAL SER ALA GLU ASP LEU LEU THR CYS CYS SEQRES 6 A 256 GLY SER MET CYS GLY ASP GLY CYS ASN GLY GLY TYR PRO SEQRES 7 A 256 ALA GLU ALA TRP ASN PHE TRP THR ARG LYS GLY LEU VAL SEQRES 8 A 256 SER GLY GLY LEU TYR GLU SER HIS VAL GLY CYS ARG PRO SEQRES 9 A 256 TYR SER ILE PRO PRO CYS GLU HIS HIS VAL ASN GLY SER SEQRES 10 A 256 ARG PRO PRO CYS THR GLY GLU GLY ASP THR PRO LYS CYS SEQRES 11 A 256 SER LYS ILE CYS GLU PRO GLY TYR SER PRO THR TYR LYS SEQRES 12 A 256 GLN ASP LYS HIS TYR GLY TYR ASN SER TYR SER VAL SER SEQRES 13 A 256 ASN SER GLU LYS ASP ILE MET ALA GLU ILE TYR LYS ASN SEQRES 14 A 256 GLY PRO VAL GLU GLY ALA PHE SER VAL TYR SER ASP PHE SEQRES 15 A 256 LEU LEU TYR LYS SER GLY VAL TYR GLN HIS VAL THR GLY SEQRES 16 A 256 GLU MET MET GLY GLY HIS ALA ILE ARG ILE LEU GLY TRP SEQRES 17 A 256 GLY VAL GLU ASN GLY THR PRO TYR TRP LEU VAL ALA ASN SEQRES 18 A 256 SER TRP ASN THR ASP TRP GLY ASP ASN GLY PHE PHE LYS SEQRES 19 A 256 ILE LEU ARG GLY GLN ASP HIS CYS GLY ILE GLU SER GLU SEQRES 20 A 256 VAL VAL ALA GLY ILE PRO ARG THR ASP SEQRES 1 B 171 MET ARG GLY SER HIS HIS HIS HIS HIS HIS GLY SER ASP SEQRES 2 B 171 LEU GLY LYS LYS LEU LEU ASP ALA ALA SER ALA GLY GLN SEQRES 3 B 171 ASP ASP GLU VAL ARG ILE LEU MET ALA ASN GLY ALA ASP SEQRES 4 B 171 VAL ASN ALA SER ASN SER TYR GLY ARG THR PRO LEU HIS SEQRES 5 B 171 ALA ALA ALA ASN GLY HIS LEU GLU ILE VAL ASP VAL LEU SEQRES 6 B 171 LEU ALA TYR GLY ALA ASP VAL ASN ALA SER ASP GLN TRP SEQRES 7 B 171 GLY TYR THR PRO LEU HIS LEU ALA ALA ALA GLU GLY HIS SEQRES 8 B 171 LEU GLU ILE VAL VAL VAL LEU LEU ALA ASN GLY ALA ASP SEQRES 9 B 171 VAL ASN ALA SER SER LYS ARG GLY ASN THR PRO LEU HIS SEQRES 10 B 171 VAL ALA ALA GLN SER GLY HIS LEU GLU ILE ALA ASP VAL SEQRES 11 B 171 LEU LEU ALA HIS GLY ALA ASP ILE ASN ALA ASN ASP TYR SEQRES 12 B 171 ASN GLY LYS THR PRO PHE ASP LEU ALA ILE ASP ASN GLY SEQRES 13 B 171 ASN ALA ASP ILE ALA GLU VAL LEU GLN LYS ALA ALA LYS SEQRES 14 B 171 LEU ASN MODRES 5MBL SCH A 30 CYS MODIFIED RESIDUE HET SCH A 30 16 HET SO4 B 501 5 HETNAM SCH S-METHYL-THIO-CYSTEINE HETNAM SO4 SULFATE ION FORMUL 1 SCH C4 H9 N O2 S2 FORMUL 3 SO4 O4 S 2- FORMUL 4 HOH *541(H2 O) HELIX 1 AA1 ALA A 8 TRP A 12 1 5 HELIX 2 AA2 CYS A 15 GLU A 20 5 6 HELIX 3 AA3 SER A 29 THR A 47 1 19 HELIX 4 AA4 SER A 56 CYS A 64 1 9 HELIX 5 AA5 GLY A 65 GLY A 69 5 5 HELIX 6 AA6 ASP A 70 GLY A 74 5 5 HELIX 7 AA7 TYR A 76 LYS A 87 1 12 HELIX 8 AA8 THR A 140 LYS A 145 1 6 HELIX 9 AA9 SER A 157 GLY A 169 1 13 HELIX 10 AB1 SER A 179 LEU A 183 1 5 HELIX 11 AB2 ASP A 239 ILE A 243 5 5 HELIX 12 AB3 SER B 262 ALA B 274 1 13 HELIX 13 AB4 GLN B 276 ASN B 286 1 11 HELIX 14 AB5 THR B 299 ALA B 305 1 7 HELIX 15 AB6 HIS B 308 TYR B 318 1 11 HELIX 16 AB7 THR B 331 GLU B 339 1 9 HELIX 17 AB8 HIS B 341 ASN B 351 1 11 HELIX 18 AB9 THR B 364 GLY B 373 1 10 HELIX 19 AC1 HIS B 374 HIS B 384 1 11 HELIX 20 AC2 THR B 397 ASN B 405 1 9 HELIX 21 AC3 ASN B 407 LEU B 420 1 14 SHEET 1 AA1 3 PHE A 6 ASP A 7 0 SHEET 2 AA1 3 MET A 196 GLU A 210 -1 O TRP A 207 N PHE A 6 SHEET 3 AA1 3 VAL A 171 TYR A 178 -1 N VAL A 177 O MET A 197 SHEET 1 AA2 5 PHE A 6 ASP A 7 0 SHEET 2 AA2 5 MET A 196 GLU A 210 -1 O TRP A 207 N PHE A 6 SHEET 3 AA2 5 THR A 213 ALA A 219 -1 O ALA A 219 N ARG A 203 SHEET 4 AA2 5 PHE A 231 LEU A 235 -1 O PHE A 232 N VAL A 218 SHEET 5 AA2 5 VAL A 188 TYR A 189 1 N TYR A 189 O LYS A 233 SHEET 1 AA3 2 GLY A 148 SER A 153 0 SHEET 2 AA3 2 VAL A 248 PRO A 252 -1 O ILE A 251 N TYR A 149 SSBOND 1 CYS A 15 CYS A 44 1555 1555 2.06 SSBOND 2 CYS A 27 CYS A 72 1555 1555 2.07 SSBOND 3 CYS A 63 CYS A 129 1555 1555 2.09 SSBOND 4 CYS A 64 CYS A 68 1555 1555 2.02 SSBOND 5 CYS A 101 CYS A 133 1555 1555 2.05 SSBOND 6 CYS A 109 CYS A 120 1555 1555 2.05 LINK C SER A 29 N ASCH A 30 1555 1555 1.35 LINK C SER A 29 N BSCH A 30 1555 1555 1.39 LINK C ASCH A 30 N TRP A 31 1555 1555 1.35 LINK C BSCH A 30 N TRP A 31 1555 1555 1.27 CISPEP 1 SER A 138 PRO A 139 0 -0.21 SITE 1 AC1 10 GLY B 340 HIS B 341 LEU B 342 GLU B 343 SITE 2 AC1 10 HOH B 611 HOH B 629 HOH B 652 HOH B 666 SITE 3 AC1 10 HOH B 714 HOH B 720 CRYST1 105.790 105.790 92.610 90.00 90.00 90.00 P 42 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009453 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009453 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010798 0.00000