HEADER HYDROLASE 09-NOV-16 5MC3 TITLE CRYSTAL STRUCTURE OF GLU412LYS MUTANT OF HUMAN PROLIDASE WITH MN IONS TITLE 2 AND GLYPRO LIGAND COMPND MOL_ID: 1; COMPND 2 MOLECULE: XAA-PRO DIPEPTIDASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: X-PRO DIPEPTIDASE,IMIDODIPEPTIDASE,PEPTIDASE D,PROLINE COMPND 5 DIPEPTIDASE,PROLIDASE; COMPND 6 EC: 3.4.13.9; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PEPD, PRD; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: ROSETTA; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS PROLIDASE, PEPTIDASE, HYDROLYSIS, PITA-BREAD, METALLOENZYME, KEYWDS 2 MUTATION, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR P.WILK,U.MUELLER,H.DOBBEK,M.S.WEISS REVDAT 4 17-JAN-24 5MC3 1 LINK REVDAT 3 26-SEP-18 5MC3 1 JRNL REVDAT 2 15-AUG-18 5MC3 1 JRNL REVDAT 1 20-DEC-17 5MC3 0 JRNL AUTH P.WILK,M.UEHLEIN,R.PIWOWARCZYK,H.DOBBEK,U.MUELLER,M.S.WEISS JRNL TITL STRUCTURAL BASIS FOR PROLIDASE DEFICIENCY DISEASE JRNL TITL 2 MECHANISMS. JRNL REF FEBS J. V. 285 3422 2018 JRNL REFN ISSN 1742-4658 JRNL PMID 30066404 JRNL DOI 10.1111/FEBS.14620 REMARK 2 REMARK 2 RESOLUTION. 1.52 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.52 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.79 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 183606 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.131 REMARK 3 R VALUE (WORKING SET) : 0.131 REMARK 3 FREE R VALUE : 0.158 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 1.140 REMARK 3 FREE R VALUE TEST SET COUNT : 2101 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.8135 - 3.7431 1.00 12570 146 0.1394 0.1444 REMARK 3 2 3.7431 - 2.9712 1.00 12264 142 0.1180 0.1444 REMARK 3 3 2.9712 - 2.5956 1.00 12212 141 0.1260 0.1747 REMARK 3 4 2.5956 - 2.3583 1.00 12174 141 0.1120 0.1377 REMARK 3 5 2.3583 - 2.1893 1.00 12109 140 0.1085 0.1288 REMARK 3 6 2.1893 - 2.0602 1.00 12107 140 0.1068 0.1513 REMARK 3 7 2.0602 - 1.9570 1.00 12102 141 0.1124 0.1532 REMARK 3 8 1.9570 - 1.8718 1.00 12155 140 0.1178 0.1555 REMARK 3 9 1.8718 - 1.7998 1.00 12045 140 0.1306 0.1568 REMARK 3 10 1.7998 - 1.7377 1.00 12050 139 0.1443 0.1838 REMARK 3 11 1.7377 - 1.6833 1.00 12048 139 0.1518 0.1900 REMARK 3 12 1.6833 - 1.6352 1.00 12089 140 0.1594 0.1900 REMARK 3 13 1.6352 - 1.5922 1.00 12012 139 0.1819 0.2107 REMARK 3 14 1.5922 - 1.5533 1.00 12012 139 0.2223 0.2897 REMARK 3 15 1.5533 - 1.5180 0.96 11556 134 0.2849 0.3135 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.150 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 15.800 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 17.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.10 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 8015 REMARK 3 ANGLE : 1.110 10876 REMARK 3 CHIRALITY : 0.046 1178 REMARK 3 PLANARITY : 0.006 1422 REMARK 3 DIHEDRAL : 12.570 3006 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5MC3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 10-NOV-16. REMARK 100 THE DEPOSITION ID IS D_1200002251. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-JAN-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.2-7.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9184 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL MONOCHROMATOR SI REMARK 200 -11 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS, XSCALE REMARK 200 DATA SCALING SOFTWARE : XSCALE, XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 183636 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.518 REMARK 200 RESOLUTION RANGE LOW (A) : 47.790 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 6.750 REMARK 200 R MERGE (I) : 0.08400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.8600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.52 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.61 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.3 REMARK 200 DATA REDUNDANCY IN SHELL : 5.56 REMARK 200 R MERGE FOR SHELL (I) : 0.76400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.820 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5M4J REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.71 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.78 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10MM NABORATE, 690-760MM NACITRATE, REMARK 280 VAPOR DIFFUSION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 108.71700 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 108.71700 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 51.79500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 53.20600 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 51.79500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 53.20600 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 108.71700 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 51.79500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 53.20600 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 108.71700 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 51.79500 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 53.20600 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8770 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 34740 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -55.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 483 REMARK 465 LYS A 484 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 THR B 487 OG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 C GLY B 503 N PRO B 504 1.35 REMARK 500 C GLY A 503 N PRO A 504 1.35 REMARK 500 O1 GOL A 507 O HOH A 601 2.02 REMARK 500 OD1 ASP B 328 O HOH B 601 2.09 REMARK 500 O LEU A 435 O HOH A 602 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 13 -124.44 49.72 REMARK 500 TYR A 57 -127.32 48.28 REMARK 500 CYS A 245 75.90 -119.28 REMARK 500 ALA A 261 68.28 -151.85 REMARK 500 ARG A 470 -38.13 -130.01 REMARK 500 ASN B 13 -124.09 50.37 REMARK 500 TYR B 57 -126.89 49.58 REMARK 500 CYS B 245 75.48 -118.93 REMARK 500 PRO B 262 58.06 -91.03 REMARK 500 ARG B 470 -35.77 -130.56 REMARK 500 CYS B 482 56.80 -107.42 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1062 DISTANCE = 6.50 ANGSTROMS REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 GLY A 503 REMARK 610 GLY B 503 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 500 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 276 OD1 REMARK 620 2 ASP A 276 OD2 55.2 REMARK 620 3 ASP A 287 OD1 80.9 134.6 REMARK 620 4 GLU A 452 OE1 96.1 99.2 72.2 REMARK 620 5 OH A 501 O 120.2 67.0 145.2 77.9 REMARK 620 6 GLY A 503 N 99.1 87.9 112.1 164.7 92.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 505 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 648 O REMARK 620 2 HOH A 690 O 86.6 REMARK 620 3 HOH A1024 O 92.4 103.5 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 505 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LYS B 211 O REMARK 620 2 MET B 479 O 119.0 REMARK 620 3 HOH B 752 O 82.4 83.9 REMARK 620 4 HOH B 948 O 158.5 82.0 105.9 REMARK 620 5 HOH B 986 O 81.5 152.0 80.0 80.5 REMARK 620 6 HOH B 997 O 88.9 103.4 170.7 81.2 95.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 500 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 276 OD1 REMARK 620 2 ASP B 276 OD2 54.5 REMARK 620 3 ASP B 287 OD1 81.1 133.8 REMARK 620 4 ASP B 287 OD2 125.2 168.2 51.4 REMARK 620 5 GLU B 452 OE1 93.8 98.4 70.0 93.4 REMARK 620 6 OH B 501 O 116.2 65.8 140.5 117.9 73.5 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN A 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OH A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GLY A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PRO A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 506 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 507 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 508 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 509 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN B 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OH B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GLY B 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PRO B 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA B 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 506 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 507 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 508 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 509 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 510 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 511 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5M4J RELATED DB: PDB REMARK 900 WILD-TYPE HUMAN PROLIDASE REMARK 900 RELATED ID: 5MBY RELATED DB: PDB REMARK 900 MUTATIONS OF HUMAN PROLIDASE REMARK 900 RELATED ID: 5MBZ RELATED DB: PDB REMARK 900 MUTATIONS OF HUMAN PROLIDASE REMARK 900 RELATED ID: 5MC0 RELATED DB: PDB REMARK 900 MUTATIONS OF HUMAN PROLIDASE REMARK 900 RELATED ID: 5MC1 RELATED DB: PDB REMARK 900 MUTATIONS OF HUMAN PROLIDASE REMARK 900 RELATED ID: 5MC2 RELATED DB: PDB REMARK 900 MUTATIONS OF HUMAN PROLIDASE REMARK 900 RELATED ID: 5MC4 RELATED DB: PDB REMARK 900 MUTATIONS OF HUMAN PROLIDASE REMARK 900 RELATED ID: 5MC5 RELATED DB: PDB REMARK 900 MUTATIONS OF HUMAN PROLIDASE DBREF 5MC3 A 6 489 UNP P12955 PEPD_HUMAN 6 489 DBREF 5MC3 B 6 489 UNP P12955 PEPD_HUMAN 6 489 SEQADV 5MC3 LYS A 412 UNP P12955 GLU 412 ENGINEERED MUTATION SEQADV 5MC3 LYS B 412 UNP P12955 GLU 412 ENGINEERED MUTATION SEQRES 1 A 484 GLY PRO SER PHE TRP LEU GLY ASN GLU THR LEU LYS VAL SEQRES 2 A 484 PRO LEU ALA LEU PHE ALA LEU ASN ARG GLN ARG LEU CYS SEQRES 3 A 484 GLU ARG LEU ARG LYS ASN PRO ALA VAL GLN ALA GLY SER SEQRES 4 A 484 ILE VAL VAL LEU GLN GLY GLY GLU GLU THR GLN ARG TYR SEQRES 5 A 484 CYS THR ASP THR GLY VAL LEU PHE ARG GLN GLU SER PHE SEQRES 6 A 484 PHE HIS TRP ALA PHE GLY VAL THR GLU PRO GLY CYS TYR SEQRES 7 A 484 GLY VAL ILE ASP VAL ASP THR GLY LYS SER THR LEU PHE SEQRES 8 A 484 VAL PRO ARG LEU PRO ALA SER HIS ALA THR TRP MET GLY SEQRES 9 A 484 LYS ILE HIS SER LYS GLU HIS PHE LYS GLU LYS TYR ALA SEQRES 10 A 484 VAL ASP ASP VAL GLN TYR VAL ASP GLU ILE ALA SER VAL SEQRES 11 A 484 LEU THR SER GLN LYS PRO SER VAL LEU LEU THR LEU ARG SEQRES 12 A 484 GLY VAL ASN THR ASP SER GLY SER VAL CYS ARG GLU ALA SEQRES 13 A 484 SER PHE ASP GLY ILE SER LYS PHE GLU VAL ASN ASN THR SEQRES 14 A 484 ILE LEU HIS PRO GLU ILE VAL GLU CYS ARG VAL PHE LYS SEQRES 15 A 484 THR ASP MET GLU LEU GLU VAL LEU ARG TYR THR ASN LYS SEQRES 16 A 484 ILE SER SER GLU ALA HIS ARG GLU VAL MET LYS ALA VAL SEQRES 17 A 484 LYS VAL GLY MET LYS GLU TYR GLU LEU GLU SER LEU PHE SEQRES 18 A 484 GLU HIS TYR CYS TYR SER ARG GLY GLY MET ARG HIS SER SEQRES 19 A 484 SER TYR THR CYS ILE CYS GLY SER GLY GLU ASN SER ALA SEQRES 20 A 484 VAL LEU HIS TYR GLY HIS ALA GLY ALA PRO ASN ASP ARG SEQRES 21 A 484 THR ILE GLN ASN GLY ASP MET CYS LEU PHE ASP MET GLY SEQRES 22 A 484 GLY GLU TYR TYR CYS PHE ALA SER ASP ILE THR CYS SER SEQRES 23 A 484 PHE PRO ALA ASN GLY LYS PHE THR ALA ASP GLN LYS ALA SEQRES 24 A 484 VAL TYR GLU ALA VAL LEU ARG SER SER ARG ALA VAL MET SEQRES 25 A 484 GLY ALA MET LYS PRO GLY VAL TRP TRP PRO ASP MET HIS SEQRES 26 A 484 ARG LEU ALA ASP ARG ILE HIS LEU GLU GLU LEU ALA HIS SEQRES 27 A 484 MET GLY ILE LEU SER GLY SER VAL ASP ALA MET VAL GLN SEQRES 28 A 484 ALA HIS LEU GLY ALA VAL PHE MET PRO HIS GLY LEU GLY SEQRES 29 A 484 HIS PHE LEU GLY ILE ASP VAL HIS ASP VAL GLY GLY TYR SEQRES 30 A 484 PRO GLU GLY VAL GLU ARG ILE ASP GLU PRO GLY LEU ARG SEQRES 31 A 484 SER LEU ARG THR ALA ARG HIS LEU GLN PRO GLY MET VAL SEQRES 32 A 484 LEU THR VAL LYS PRO GLY ILE TYR PHE ILE ASP HIS LEU SEQRES 33 A 484 LEU ASP GLU ALA LEU ALA ASP PRO ALA ARG ALA SER PHE SEQRES 34 A 484 LEU ASN ARG GLU VAL LEU GLN ARG PHE ARG GLY PHE GLY SEQRES 35 A 484 GLY VAL ARG ILE GLU GLU ASP VAL VAL VAL THR ASP SER SEQRES 36 A 484 GLY ILE GLU LEU LEU THR CYS VAL PRO ARG THR VAL GLU SEQRES 37 A 484 GLU ILE GLU ALA CYS MET ALA GLY CYS ASP LYS ALA PHE SEQRES 38 A 484 THR PRO PHE SEQRES 1 B 484 GLY PRO SER PHE TRP LEU GLY ASN GLU THR LEU LYS VAL SEQRES 2 B 484 PRO LEU ALA LEU PHE ALA LEU ASN ARG GLN ARG LEU CYS SEQRES 3 B 484 GLU ARG LEU ARG LYS ASN PRO ALA VAL GLN ALA GLY SER SEQRES 4 B 484 ILE VAL VAL LEU GLN GLY GLY GLU GLU THR GLN ARG TYR SEQRES 5 B 484 CYS THR ASP THR GLY VAL LEU PHE ARG GLN GLU SER PHE SEQRES 6 B 484 PHE HIS TRP ALA PHE GLY VAL THR GLU PRO GLY CYS TYR SEQRES 7 B 484 GLY VAL ILE ASP VAL ASP THR GLY LYS SER THR LEU PHE SEQRES 8 B 484 VAL PRO ARG LEU PRO ALA SER HIS ALA THR TRP MET GLY SEQRES 9 B 484 LYS ILE HIS SER LYS GLU HIS PHE LYS GLU LYS TYR ALA SEQRES 10 B 484 VAL ASP ASP VAL GLN TYR VAL ASP GLU ILE ALA SER VAL SEQRES 11 B 484 LEU THR SER GLN LYS PRO SER VAL LEU LEU THR LEU ARG SEQRES 12 B 484 GLY VAL ASN THR ASP SER GLY SER VAL CYS ARG GLU ALA SEQRES 13 B 484 SER PHE ASP GLY ILE SER LYS PHE GLU VAL ASN ASN THR SEQRES 14 B 484 ILE LEU HIS PRO GLU ILE VAL GLU CYS ARG VAL PHE LYS SEQRES 15 B 484 THR ASP MET GLU LEU GLU VAL LEU ARG TYR THR ASN LYS SEQRES 16 B 484 ILE SER SER GLU ALA HIS ARG GLU VAL MET LYS ALA VAL SEQRES 17 B 484 LYS VAL GLY MET LYS GLU TYR GLU LEU GLU SER LEU PHE SEQRES 18 B 484 GLU HIS TYR CYS TYR SER ARG GLY GLY MET ARG HIS SER SEQRES 19 B 484 SER TYR THR CYS ILE CYS GLY SER GLY GLU ASN SER ALA SEQRES 20 B 484 VAL LEU HIS TYR GLY HIS ALA GLY ALA PRO ASN ASP ARG SEQRES 21 B 484 THR ILE GLN ASN GLY ASP MET CYS LEU PHE ASP MET GLY SEQRES 22 B 484 GLY GLU TYR TYR CYS PHE ALA SER ASP ILE THR CYS SER SEQRES 23 B 484 PHE PRO ALA ASN GLY LYS PHE THR ALA ASP GLN LYS ALA SEQRES 24 B 484 VAL TYR GLU ALA VAL LEU ARG SER SER ARG ALA VAL MET SEQRES 25 B 484 GLY ALA MET LYS PRO GLY VAL TRP TRP PRO ASP MET HIS SEQRES 26 B 484 ARG LEU ALA ASP ARG ILE HIS LEU GLU GLU LEU ALA HIS SEQRES 27 B 484 MET GLY ILE LEU SER GLY SER VAL ASP ALA MET VAL GLN SEQRES 28 B 484 ALA HIS LEU GLY ALA VAL PHE MET PRO HIS GLY LEU GLY SEQRES 29 B 484 HIS PHE LEU GLY ILE ASP VAL HIS ASP VAL GLY GLY TYR SEQRES 30 B 484 PRO GLU GLY VAL GLU ARG ILE ASP GLU PRO GLY LEU ARG SEQRES 31 B 484 SER LEU ARG THR ALA ARG HIS LEU GLN PRO GLY MET VAL SEQRES 32 B 484 LEU THR VAL LYS PRO GLY ILE TYR PHE ILE ASP HIS LEU SEQRES 33 B 484 LEU ASP GLU ALA LEU ALA ASP PRO ALA ARG ALA SER PHE SEQRES 34 B 484 LEU ASN ARG GLU VAL LEU GLN ARG PHE ARG GLY PHE GLY SEQRES 35 B 484 GLY VAL ARG ILE GLU GLU ASP VAL VAL VAL THR ASP SER SEQRES 36 B 484 GLY ILE GLU LEU LEU THR CYS VAL PRO ARG THR VAL GLU SEQRES 37 B 484 GLU ILE GLU ALA CYS MET ALA GLY CYS ASP LYS ALA PHE SEQRES 38 B 484 THR PRO PHE HET MN A 500 1 HET OH A 501 1 HET GLY A 503 4 HET PRO A 504 8 HET NA A 505 1 HET GOL A 506 6 HET GOL A 507 6 HET GOL A 508 6 HET GOL A 509 6 HET MN B 500 1 HET OH B 501 1 HET GLY B 503 4 HET PRO B 504 8 HET NA B 505 1 HET GOL B 506 6 HET GOL B 507 12 HET GOL B 508 6 HET GOL B 509 6 HET GOL B 510 6 HET GOL B 511 6 HETNAM MN MANGANESE (II) ION HETNAM OH HYDROXIDE ION HETNAM GLY GLYCINE HETNAM PRO PROLINE HETNAM NA SODIUM ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 MN 2(MN 2+) FORMUL 4 OH 2(H O 1-) FORMUL 5 GLY 2(C2 H5 N O2) FORMUL 6 PRO 2(C5 H9 N O2) FORMUL 7 NA 2(NA 1+) FORMUL 8 GOL 10(C3 H8 O3) FORMUL 23 HOH *939(H2 O) HELIX 1 AA1 LEU A 20 LYS A 36 1 17 HELIX 2 AA2 GLU A 68 GLY A 76 1 9 HELIX 3 AA3 SER A 103 MET A 108 1 6 HELIX 4 AA4 SER A 113 ALA A 122 1 10 HELIX 5 AA5 GLU A 131 LYS A 140 1 10 HELIX 6 AA6 GLY A 165 PHE A 169 5 5 HELIX 7 AA7 ILE A 175 PHE A 186 1 12 HELIX 8 AA8 THR A 188 VAL A 213 1 26 HELIX 9 AA9 LYS A 218 GLY A 235 1 18 HELIX 10 AB1 GLU A 249 VAL A 253 5 5 HELIX 11 AB2 THR A 299 MET A 320 1 22 HELIX 12 AB3 TRP A 325 MET A 344 1 20 HELIX 13 AB4 SER A 350 ALA A 357 1 8 HELIX 14 AB5 LEU A 359 MET A 364 1 6 HELIX 15 AB6 GLY A 393 LEU A 397 5 5 HELIX 16 AB7 ILE A 418 ASP A 428 1 11 HELIX 17 AB8 ASP A 428 SER A 433 1 6 HELIX 18 AB9 ASN A 436 GLN A 441 1 6 HELIX 19 AC1 ARG A 442 ARG A 444 5 3 HELIX 20 AC2 THR A 471 ALA A 480 1 10 HELIX 21 AC3 LEU B 20 LYS B 36 1 17 HELIX 22 AC4 GLU B 68 GLY B 76 1 9 HELIX 23 AC5 SER B 103 MET B 108 1 6 HELIX 24 AC6 SER B 113 ALA B 122 1 10 HELIX 25 AC7 GLU B 131 LYS B 140 1 10 HELIX 26 AC8 GLY B 165 PHE B 169 5 5 HELIX 27 AC9 ILE B 175 PHE B 186 1 12 HELIX 28 AD1 THR B 188 VAL B 213 1 26 HELIX 29 AD2 LYS B 218 GLY B 235 1 18 HELIX 30 AD3 GLU B 249 VAL B 253 5 5 HELIX 31 AD4 THR B 299 MET B 320 1 22 HELIX 32 AD5 TRP B 325 MET B 344 1 20 HELIX 33 AD6 SER B 350 ALA B 357 1 8 HELIX 34 AD7 LEU B 359 MET B 364 1 6 HELIX 35 AD8 GLY B 393 LEU B 397 5 5 HELIX 36 AD9 ILE B 418 ASP B 428 1 11 HELIX 37 AE1 ARG B 431 LEU B 435 5 5 HELIX 38 AE2 ASN B 436 GLN B 441 1 6 HELIX 39 AE3 ARG B 442 ARG B 444 5 3 HELIX 40 AE4 THR B 471 ALA B 480 1 10 SHEET 1 AA1 2 SER A 8 PHE A 9 0 SHEET 2 AA1 2 VAL A 18 PRO A 19 -1 O VAL A 18 N PHE A 9 SHEET 1 AA2 6 ASP A 125 TYR A 128 0 SHEET 2 AA2 6 SER A 93 VAL A 97 1 N LEU A 95 O ASP A 125 SHEET 3 AA2 6 TYR A 83 ASP A 87 -1 N TYR A 83 O PHE A 96 SHEET 4 AA2 6 ILE A 45 GLN A 49 -1 N LEU A 48 O GLY A 84 SHEET 5 AA2 6 LEU A 144 LEU A 145 1 O LEU A 145 N ILE A 45 SHEET 6 AA2 6 VAL A 171 ASN A 172 1 O ASN A 172 N LEU A 144 SHEET 1 AA3 2 THR A 54 GLN A 55 0 SHEET 2 AA3 2 GLY A 62 VAL A 63 -1 O VAL A 63 N THR A 54 SHEET 1 AA4 2 HIS A 238 SER A 239 0 SHEET 2 AA4 2 GLY A 279 GLU A 280 -1 O GLU A 280 N HIS A 238 SHEET 1 AA5 3 ILE A 244 SER A 247 0 SHEET 2 AA5 3 MET A 272 MET A 277 -1 O ASP A 276 N ILE A 244 SHEET 3 AA5 3 ILE A 288 PRO A 293 -1 O PHE A 292 N CYS A 273 SHEET 1 AA6 3 VAL A 408 VAL A 411 0 SHEET 2 AA6 3 GLU A 453 VAL A 457 -1 O GLU A 453 N VAL A 411 SHEET 3 AA6 3 ILE A 462 LEU A 464 -1 O GLU A 463 N VAL A 456 SHEET 1 AA7 2 GLY A 414 TYR A 416 0 SHEET 2 AA7 2 GLY A 448 ARG A 450 -1 O VAL A 449 N ILE A 415 SHEET 1 AA8 2 SER B 8 PHE B 9 0 SHEET 2 AA8 2 VAL B 18 PRO B 19 -1 O VAL B 18 N PHE B 9 SHEET 1 AA9 6 ASP B 125 TYR B 128 0 SHEET 2 AA9 6 SER B 93 VAL B 97 1 N LEU B 95 O ASP B 125 SHEET 3 AA9 6 TYR B 83 ASP B 87 -1 N TYR B 83 O PHE B 96 SHEET 4 AA9 6 ILE B 45 GLN B 49 -1 N LEU B 48 O GLY B 84 SHEET 5 AA9 6 LEU B 144 LEU B 145 1 O LEU B 145 N ILE B 45 SHEET 6 AA9 6 VAL B 171 ASN B 172 1 O ASN B 172 N LEU B 144 SHEET 1 AB1 2 THR B 54 GLN B 55 0 SHEET 2 AB1 2 GLY B 62 VAL B 63 -1 O VAL B 63 N THR B 54 SHEET 1 AB2 2 HIS B 238 SER B 239 0 SHEET 2 AB2 2 GLY B 279 GLU B 280 -1 O GLU B 280 N HIS B 238 SHEET 1 AB3 3 ILE B 244 SER B 247 0 SHEET 2 AB3 3 MET B 272 MET B 277 -1 O ASP B 276 N ILE B 244 SHEET 3 AB3 3 ILE B 288 PRO B 293 -1 O PHE B 292 N CYS B 273 SHEET 1 AB4 3 VAL B 408 VAL B 411 0 SHEET 2 AB4 3 GLU B 453 VAL B 457 -1 O VAL B 455 N LEU B 409 SHEET 3 AB4 3 ILE B 462 LEU B 464 -1 O GLU B 463 N VAL B 456 SHEET 1 AB5 2 GLY B 414 TYR B 416 0 SHEET 2 AB5 2 GLY B 448 ARG B 450 -1 O VAL B 449 N ILE B 415 SSBOND 1 CYS A 482 CYS A 482 1555 3555 2.03 LINK OD1 ASP A 276 MN MN A 500 1555 1555 2.30 LINK OD2 ASP A 276 MN MN A 500 1555 1555 2.45 LINK OD1 ASP A 287 MN MN A 500 1555 1555 2.16 LINK OE1 GLU A 452 MN MN A 500 1555 1555 2.62 LINK MN MN A 500 O OH A 501 1555 1555 1.75 LINK MN MN A 500 N GLY A 503 1555 1555 2.80 LINK NA NA A 505 O HOH A 648 1555 1555 2.30 LINK NA NA A 505 O HOH A 690 1555 1555 2.82 LINK NA NA A 505 O HOH A1024 1555 1555 3.13 LINK O LYS B 211 NA NA B 505 1555 1555 2.38 LINK OD1 ASP B 276 MN MN B 500 1555 1555 2.31 LINK OD2 ASP B 276 MN MN B 500 1555 1555 2.51 LINK OD1 ASP B 287 MN MN B 500 1555 1555 2.16 LINK OD2 ASP B 287 MN MN B 500 1555 1555 2.72 LINK OE1 GLU B 452 MN MN B 500 1555 1555 2.61 LINK O MET B 479 NA NA B 505 1555 1555 2.40 LINK MN MN B 500 O OH B 501 1555 1555 1.78 LINK NA NA B 505 O HOH B 752 1555 1555 2.48 LINK NA NA B 505 O HOH B 948 1555 1555 2.39 LINK NA NA B 505 O HOH B 986 1555 1555 2.53 LINK NA NA B 505 O HOH B 997 1555 1555 2.40 SITE 1 AC1 6 ASP A 276 ASP A 287 LYS A 412 GLU A 452 SITE 2 AC1 6 OH A 501 GLY A 503 SITE 1 AC2 7 ASP A 276 LYS A 412 ARG A 450 GLU A 452 SITE 2 AC2 7 MN A 500 GLY A 503 PRO A 504 SITE 1 AC3 11 TYR A 241 ILE A 244 HIS A 255 ASP A 276 SITE 2 AC3 11 ASP A 287 HIS A 377 LYS A 412 MN A 500 SITE 3 AC3 11 OH A 501 PRO A 504 HOH A 757 SITE 1 AC4 11 LEU A 254 HIS A 255 HIS A 366 HIS A 377 SITE 2 AC4 11 ARG A 398 ARG A 450 OH A 501 GLY A 503 SITE 3 AC4 11 HOH A 759 HOH A 792 TRP B 107 SITE 1 AC5 4 GLY A 235 TYR A 282 HOH A 648 HOH A 690 SITE 1 AC6 8 PHE A 9 TRP A 10 LEU A 11 LYS A 120 SITE 2 AC6 8 HOH A 608 HOH A 626 HOH A 681 ASP B 264 SITE 1 AC7 5 GLY A 109 LYS A 110 HOH A 601 HOH A 917 SITE 2 AC7 5 HOH B 661 SITE 1 AC8 3 ASP A 390 PRO A 392 ARG A 395 SITE 1 AC9 3 GLU A 387 ARG A 388 HOH A 761 SITE 1 AD1 6 ASP B 276 ASP B 287 LYS B 412 GLU B 452 SITE 2 AD1 6 OH B 501 GLY B 503 SITE 1 AD2 7 ASP B 276 LYS B 412 ARG B 450 GLU B 452 SITE 2 AD2 7 MN B 500 GLY B 503 PRO B 504 SITE 1 AD3 11 TYR B 241 ILE B 244 HIS B 255 ASP B 276 SITE 2 AD3 11 ASP B 287 HIS B 377 LYS B 412 MN B 500 SITE 3 AD3 11 OH B 501 PRO B 504 HOH B 637 SITE 1 AD4 12 TRP A 107 LEU B 254 HIS B 255 HIS B 366 SITE 2 AD4 12 HIS B 377 ARG B 398 LYS B 412 ARG B 450 SITE 3 AD4 12 OH B 501 GLY B 503 HOH B 778 HOH B 782 SITE 1 AD5 7 LYS B 211 MET B 479 GOL B 507 HOH B 752 SITE 2 AD5 7 HOH B 948 HOH B 986 HOH B 997 SITE 1 AD6 6 ARG A 311 HOH A 845 HOH A1033 ARG B 35 SITE 2 AD6 6 ALA B 42 ASP B 89 SITE 1 AD7 12 PRO A 429 VAL B 213 LYS B 214 VAL B 215 SITE 2 AD7 12 ALA B 294 ASN B 295 MET B 479 NA B 505 SITE 3 AD7 12 HOH B 611 HOH B 752 HOH B 852 HOH B 948 SITE 1 AD8 5 SER B 134 SER B 138 SER B 350 VAL B 351 SITE 2 AD8 5 ASP B 352 SITE 1 AD9 6 GLY B 270 ARG B 442 ARG B 444 PHE B 446 SITE 2 AD9 6 HOH B 671 HOH B 863 SITE 1 AE1 4 LYS B 187 ASP B 189 GLY B 406 VAL B 457 SITE 1 AE2 4 THR B 152 GLU B 387 ARG B 388 HOH B 646 CRYST1 103.590 106.412 217.434 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009653 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009397 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004599 0.00000