HEADER HYDROLASE 09-NOV-16 5MC5 TITLE CRYSTAL STRUCTURE OF DELGLU452 MUTANT OF HUMAN PROLIDASE WITH MN IONS TITLE 2 AND GLYPRO LIGAND COMPND MOL_ID: 1; COMPND 2 MOLECULE: XAA-PRO DIPEPTIDASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: X-PRO DIPEPTIDASE,IMIDODIPEPTIDASE,PEPTIDASE D,PROLINE COMPND 5 DIPEPTIDASE,PROLIDASE; COMPND 6 EC: 3.4.13.9; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PEPD, PRD; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: ROSETTA; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS PROLIDASE, PEPTIDASE, HYDROLYSIS, PITA-BREAD, METALLOENZYME, KEYWDS 2 MUTATION, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR P.WILK,U.MUELLER,H.DOBBEK,M.S.WEISS REVDAT 6 13-NOV-24 5MC5 1 REMARK REVDAT 5 17-JAN-24 5MC5 1 LINK REVDAT 4 22-APR-20 5MC5 1 REMARK REVDAT 3 26-SEP-18 5MC5 1 JRNL REVDAT 2 15-AUG-18 5MC5 1 JRNL REVDAT 1 20-DEC-17 5MC5 0 JRNL AUTH P.WILK,M.UEHLEIN,R.PIWOWARCZYK,H.DOBBEK,U.MUELLER,M.S.WEISS JRNL TITL STRUCTURAL BASIS FOR PROLIDASE DEFICIENCY DISEASE JRNL TITL 2 MECHANISMS. JRNL REF FEBS J. V. 285 3422 2018 JRNL REFN ISSN 1742-4658 JRNL PMID 30066404 JRNL DOI 10.1111/FEBS.14620 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.58 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 93464 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.148 REMARK 3 R VALUE (WORKING SET) : 0.148 REMARK 3 FREE R VALUE : 0.181 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.250 REMARK 3 FREE R VALUE TEST SET COUNT : 2101 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.5909 - 4.6807 1.00 6353 147 0.1501 0.1887 REMARK 3 2 4.6807 - 3.7157 1.00 6192 142 0.1081 0.1300 REMARK 3 3 3.7157 - 3.2461 1.00 6148 141 0.1147 0.1397 REMARK 3 4 3.2461 - 2.9494 1.00 6146 142 0.1261 0.1410 REMARK 3 5 2.9494 - 2.7380 1.00 6100 140 0.1381 0.1905 REMARK 3 6 2.7380 - 2.5766 1.00 6054 139 0.1465 0.1824 REMARK 3 7 2.5766 - 2.4476 1.00 6110 141 0.1551 0.1955 REMARK 3 8 2.4476 - 2.3410 1.00 6069 139 0.1572 0.2226 REMARK 3 9 2.3410 - 2.2509 1.00 6054 139 0.1697 0.1975 REMARK 3 10 2.2509 - 2.1732 1.00 6079 140 0.1788 0.2159 REMARK 3 11 2.1732 - 2.1053 1.00 6064 139 0.1886 0.2331 REMARK 3 12 2.1053 - 2.0451 1.00 6061 140 0.2073 0.2580 REMARK 3 13 2.0451 - 1.9913 1.00 6032 138 0.2274 0.2534 REMARK 3 14 1.9913 - 1.9427 1.00 6058 140 0.2485 0.3036 REMARK 3 15 1.9427 - 1.8985 0.97 5843 134 0.2791 0.2964 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.160 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.090 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 28.17 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.93 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 7783 REMARK 3 ANGLE : 0.886 10552 REMARK 3 CHIRALITY : 0.035 1147 REMARK 3 PLANARITY : 0.004 1387 REMARK 3 DIHEDRAL : 12.900 2884 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 13 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 6 THROUGH 124 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.3444 23.8317 95.8140 REMARK 3 T TENSOR REMARK 3 T11: 0.3146 T22: 0.2592 REMARK 3 T33: 0.2845 T12: 0.0445 REMARK 3 T13: 0.0422 T23: 0.0101 REMARK 3 L TENSOR REMARK 3 L11: 1.0746 L22: 0.9878 REMARK 3 L33: 1.3318 L12: 0.0739 REMARK 3 L13: 0.1400 L23: -0.4264 REMARK 3 S TENSOR REMARK 3 S11: 0.0272 S12: -0.0688 S13: 0.1765 REMARK 3 S21: 0.2594 S22: 0.0189 S23: 0.1615 REMARK 3 S31: -0.2797 S32: -0.1482 S33: -0.0529 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 125 THROUGH 212 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.0877 16.0089 95.1552 REMARK 3 T TENSOR REMARK 3 T11: 0.2725 T22: 0.2338 REMARK 3 T33: 0.2681 T12: 0.0204 REMARK 3 T13: 0.0318 T23: 0.0160 REMARK 3 L TENSOR REMARK 3 L11: 0.6500 L22: 1.0176 REMARK 3 L33: 2.1446 L12: 0.0670 REMARK 3 L13: 0.4393 L23: 0.0600 REMARK 3 S TENSOR REMARK 3 S11: 0.0141 S12: -0.1312 S13: 0.0259 REMARK 3 S21: 0.2326 S22: 0.0178 S23: 0.0789 REMARK 3 S31: -0.1904 S32: 0.0194 S33: -0.0410 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 213 THROUGH 277 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.1941 14.5360 65.2750 REMARK 3 T TENSOR REMARK 3 T11: 0.2808 T22: 0.2592 REMARK 3 T33: 0.2919 T12: 0.0417 REMARK 3 T13: -0.0324 T23: 0.0168 REMARK 3 L TENSOR REMARK 3 L11: 0.6262 L22: 1.5807 REMARK 3 L33: 1.5900 L12: 0.0925 REMARK 3 L13: -0.5672 L23: 0.6589 REMARK 3 S TENSOR REMARK 3 S11: -0.0317 S12: -0.1066 S13: -0.1284 REMARK 3 S21: -0.0245 S22: 0.1063 S23: -0.1463 REMARK 3 S31: 0.1297 S32: 0.1722 S33: -0.0624 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 278 THROUGH 452 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.5543 -4.6649 73.0809 REMARK 3 T TENSOR REMARK 3 T11: 0.2216 T22: 0.2136 REMARK 3 T33: 0.2811 T12: 0.0352 REMARK 3 T13: -0.0409 T23: 0.0079 REMARK 3 L TENSOR REMARK 3 L11: 0.6557 L22: 1.0321 REMARK 3 L33: 1.4363 L12: -0.1842 REMARK 3 L13: -0.2115 L23: 0.4475 REMARK 3 S TENSOR REMARK 3 S11: 0.0106 S12: -0.0216 S13: -0.2029 REMARK 3 S21: 0.0183 S22: 0.0494 S23: -0.0390 REMARK 3 S31: 0.1596 S32: 0.1478 S33: -0.0517 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 453 THROUGH 482 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.1916 1.2945 68.6640 REMARK 3 T TENSOR REMARK 3 T11: 0.2422 T22: 0.2886 REMARK 3 T33: 0.4219 T12: 0.0444 REMARK 3 T13: -0.0664 T23: 0.0010 REMARK 3 L TENSOR REMARK 3 L11: 1.0831 L22: 1.2157 REMARK 3 L33: 7.4406 L12: 1.1125 REMARK 3 L13: -0.6431 L23: 0.0241 REMARK 3 S TENSOR REMARK 3 S11: -0.0607 S12: 0.1329 S13: -0.0523 REMARK 3 S21: -0.1307 S22: 0.0697 S23: 0.3751 REMARK 3 S31: -0.1856 S32: -0.6147 S33: -0.0089 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 6 THROUGH 124 ) REMARK 3 ORIGIN FOR THE GROUP (A): 39.7548 25.9981 69.3035 REMARK 3 T TENSOR REMARK 3 T11: 0.2280 T22: 0.2247 REMARK 3 T33: 0.3090 T12: 0.0526 REMARK 3 T13: 0.0245 T23: -0.0018 REMARK 3 L TENSOR REMARK 3 L11: 1.1622 L22: 0.7449 REMARK 3 L33: 0.7897 L12: 0.1461 REMARK 3 L13: 0.1896 L23: 0.0131 REMARK 3 S TENSOR REMARK 3 S11: 0.0014 S12: 0.0209 S13: -0.1735 REMARK 3 S21: -0.0571 S22: 0.0121 S23: -0.2369 REMARK 3 S31: 0.1243 S32: 0.0964 S33: -0.0159 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 125 THROUGH 188 ) REMARK 3 ORIGIN FOR THE GROUP (A): 46.4353 32.6304 78.5375 REMARK 3 T TENSOR REMARK 3 T11: 0.2265 T22: 0.2796 REMARK 3 T33: 0.3562 T12: 0.0400 REMARK 3 T13: -0.0130 T23: -0.0105 REMARK 3 L TENSOR REMARK 3 L11: 1.7020 L22: 1.9986 REMARK 3 L33: 1.0380 L12: -0.6889 REMARK 3 L13: 0.2436 L23: 0.0967 REMARK 3 S TENSOR REMARK 3 S11: -0.1422 S12: -0.2302 S13: 0.0380 REMARK 3 S21: 0.2584 S22: 0.1487 S23: -0.3216 REMARK 3 S31: 0.0680 S32: 0.1777 S33: 0.0048 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 189 THROUGH 271 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.7933 34.8898 69.6226 REMARK 3 T TENSOR REMARK 3 T11: 0.2708 T22: 0.2386 REMARK 3 T33: 0.2964 T12: 0.0627 REMARK 3 T13: -0.0195 T23: 0.0231 REMARK 3 L TENSOR REMARK 3 L11: 2.3983 L22: 0.7193 REMARK 3 L33: 0.5969 L12: 0.1069 REMARK 3 L13: -0.7141 L23: -0.2237 REMARK 3 S TENSOR REMARK 3 S11: -0.0231 S12: -0.1737 S13: 0.1171 REMARK 3 S21: 0.0229 S22: 0.0520 S23: 0.1465 REMARK 3 S31: -0.0391 S32: 0.0000 S33: -0.0240 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 272 THROUGH 418 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.7417 52.7452 74.2120 REMARK 3 T TENSOR REMARK 3 T11: 0.2694 T22: 0.2111 REMARK 3 T33: 0.2891 T12: 0.0662 REMARK 3 T13: 0.0041 T23: 0.0042 REMARK 3 L TENSOR REMARK 3 L11: 1.7022 L22: 1.3231 REMARK 3 L33: 0.6809 L12: -0.3667 REMARK 3 L13: -0.1783 L23: 0.0765 REMARK 3 S TENSOR REMARK 3 S11: 0.0007 S12: -0.1255 S13: 0.2945 REMARK 3 S21: 0.0417 S22: 0.0282 S23: 0.0518 REMARK 3 S31: -0.1968 S32: -0.0528 S33: -0.0330 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 419 THROUGH 452 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.1052 56.5302 85.0795 REMARK 3 T TENSOR REMARK 3 T11: 0.4073 T22: 0.3541 REMARK 3 T33: 0.3957 T12: 0.0773 REMARK 3 T13: 0.0838 T23: -0.0148 REMARK 3 L TENSOR REMARK 3 L11: 1.2817 L22: 3.0359 REMARK 3 L33: 3.4726 L12: -0.0351 REMARK 3 L13: 0.5432 L23: 1.4514 REMARK 3 S TENSOR REMARK 3 S11: -0.0224 S12: -0.3472 S13: 0.1663 REMARK 3 S21: 0.5811 S22: -0.1191 S23: 0.4778 REMARK 3 S31: -0.2192 S32: -0.4593 S33: 0.1531 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 453 THROUGH 483 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.3705 46.8786 59.9467 REMARK 3 T TENSOR REMARK 3 T11: 0.4026 T22: 0.2420 REMARK 3 T33: 0.3164 T12: 0.0626 REMARK 3 T13: -0.0054 T23: 0.0409 REMARK 3 L TENSOR REMARK 3 L11: 7.4053 L22: 0.6569 REMARK 3 L33: 0.6949 L12: 1.6153 REMARK 3 L13: 0.3136 L23: 0.0565 REMARK 3 S TENSOR REMARK 3 S11: -0.2109 S12: 0.4167 S13: 0.0487 REMARK 3 S21: -0.3130 S22: 0.1498 S23: 0.0568 REMARK 3 S31: -0.0686 S32: -0.0912 S33: 0.0648 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 1 THROUGH 2 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.9568 5.4873 76.2584 REMARK 3 T TENSOR REMARK 3 T11: 0.3861 T22: 0.7435 REMARK 3 T33: 0.5213 T12: 0.0818 REMARK 3 T13: -0.1228 T23: -0.0690 REMARK 3 L TENSOR REMARK 3 L11: 3.2377 L22: 9.6045 REMARK 3 L33: 2.5225 L12: -3.7416 REMARK 3 L13: 1.4055 L23: -2.5477 REMARK 3 S TENSOR REMARK 3 S11: -0.1309 S12: 0.0287 S13: 0.0408 REMARK 3 S21: -0.0441 S22: 0.2131 S23: 0.0146 REMARK 3 S31: 0.0328 S32: 0.2349 S33: -0.0783 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 1 THROUGH 2 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.7581 44.0108 77.5972 REMARK 3 T TENSOR REMARK 3 T11: 0.4688 T22: 0.5640 REMARK 3 T33: 0.6334 T12: 0.1091 REMARK 3 T13: -0.0278 T23: 0.0369 REMARK 3 L TENSOR REMARK 3 L11: 0.6034 L22: 8.7979 REMARK 3 L33: 6.8179 L12: 1.8610 REMARK 3 L13: 1.2592 L23: 7.4629 REMARK 3 S TENSOR REMARK 3 S11: 0.0080 S12: -0.1442 S13: 0.0149 REMARK 3 S21: -0.1323 S22: 0.1617 S23: 0.0214 REMARK 3 S31: 0.1429 S32: -0.0323 S33: -0.1764 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 2 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: CHAIN A REMARK 3 SELECTION : CHAIN B REMARK 3 ATOM PAIRS NUMBER : 5366 REMARK 3 RMSD : NULL REMARK 3 NCS GROUP : 2 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: CHAIN A REMARK 3 SELECTION : CHAIN B REMARK 3 ATOM PAIRS NUMBER : 14 REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5MC5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 10-NOV-16. REMARK 100 THE DEPOSITION ID IS D_1200002255. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-MAY-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.6-8.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9184 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL MONOCHROMATOR SI REMARK 200 -11 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS, XSCALE REMARK 200 DATA SCALING SOFTWARE : XSCALE, XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 93478 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.899 REMARK 200 RESOLUTION RANGE LOW (A) : 48.100 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 6.750 REMARK 200 R MERGE (I) : 0.11400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.01 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.8 REMARK 200 DATA REDUNDANCY IN SHELL : 6.67 REMARK 200 R MERGE FOR SHELL (I) : 1.02200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.750 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5M4J REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.75 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.78 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10MM NABORATE, 690-760MM NACITRATE, REMARK 280 VAPOR DIFFUSION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 105.67050 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 105.67050 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 51.88950 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 54.02150 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 51.88950 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 54.02150 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 105.67050 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 51.88950 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 54.02150 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 105.67050 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 51.88950 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 54.02150 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6450 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 35460 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -42.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 483 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 C GLY A 503 N PRO A 504 1.34 REMARK 500 C GLY B 503 N PRO B 504 1.34 REMARK 500 MN MN B 500 O OH B 501 1.41 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 966 O HOH B 1031 5455 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 13 -123.78 47.19 REMARK 500 TYR A 57 -125.94 50.74 REMARK 500 CYS A 245 75.30 -116.52 REMARK 500 ASP A 458 -126.94 -133.55 REMARK 500 ASN B 13 -123.18 47.77 REMARK 500 TYR B 57 -127.16 50.15 REMARK 500 CYS B 245 74.60 -115.00 REMARK 500 ASP B 458 -126.79 -135.61 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 GLY A 503 REMARK 610 GLY B 503 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 500 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 276 OD1 REMARK 620 2 ASP A 276 OD2 58.6 REMARK 620 3 ASP A 287 OD1 80.2 132.2 REMARK 620 4 OH A 501 O 134.4 85.3 112.5 REMARK 620 5 GLY A 503 N 117.1 104.2 116.3 96.9 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 499 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 287 OD2 REMARK 620 2 HIS A 370 NE2 102.9 REMARK 620 3 GLU A 412 OE2 153.3 78.4 REMARK 620 4 GLU A 452 OE2 77.6 109.8 76.9 REMARK 620 5 OH A 501 O 89.0 164.6 95.4 82.0 REMARK 620 6 GLY A 503 O 99.8 88.8 106.9 161.4 79.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 500 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 276 OD1 REMARK 620 2 ASP B 276 OD2 62.0 REMARK 620 3 ASP B 287 OD1 79.2 139.0 REMARK 620 4 GLU B 452 OE1 94.9 101.6 67.4 REMARK 620 5 GLY B 503 N 105.5 98.3 104.6 156.5 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 499 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 287 OD2 REMARK 620 2 HIS B 370 NE2 104.3 REMARK 620 3 GLU B 412 OE2 161.6 81.6 REMARK 620 4 GLU B 452 OE2 79.6 117.7 82.3 REMARK 620 5 OH B 501 O 82.3 160.7 97.8 81.1 REMARK 620 6 GLY B 503 O 92.8 84.3 105.3 157.9 77.3 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN A 499 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN A 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OH A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GLY A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PRO A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 506 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN B 499 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN B 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OH B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GLY B 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PRO B 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 506 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5M4J RELATED DB: PDB REMARK 900 WILD-TYPE HUMAN PROLIDASE REMARK 900 RELATED ID: 5MBY RELATED DB: PDB REMARK 900 MUTATIONS OF HUMAN PROLIDASE REMARK 900 RELATED ID: 5MBZ RELATED DB: PDB REMARK 900 MUTATIONS OF HUMAN PROLIDASE REMARK 900 RELATED ID: 5MC0 RELATED DB: PDB REMARK 900 MUTATIONS OF HUMAN PROLIDASE REMARK 900 RELATED ID: 5MC1 RELATED DB: PDB REMARK 900 MUTATIONS OF HUMAN PROLIDASE REMARK 900 RELATED ID: 5MC2 RELATED DB: PDB REMARK 900 MUTATIONS OF HUMAN PROLIDASE REMARK 900 RELATED ID: 5MC3 RELATED DB: PDB REMARK 900 MUTATIONS OF HUMAN PROLIDASE REMARK 900 RELATED ID: 5MC4 RELATED DB: PDB REMARK 900 MUTATIONS OF HUMAN PROLIDASE DBREF 5MC5 A 6 483 UNP P12955 PEPD_HUMAN 6 484 DBREF 5MC5 B 6 483 UNP P12955 PEPD_HUMAN 6 484 SEQADV 5MC5 A UNP P12955 GLU 452 DELETION SEQADV 5MC5 B UNP P12955 GLU 452 DELETION SEQRES 1 A 478 GLY PRO SER PHE TRP LEU GLY ASN GLU THR LEU LYS VAL SEQRES 2 A 478 PRO LEU ALA LEU PHE ALA LEU ASN ARG GLN ARG LEU CYS SEQRES 3 A 478 GLU ARG LEU ARG LYS ASN PRO ALA VAL GLN ALA GLY SER SEQRES 4 A 478 ILE VAL VAL LEU GLN GLY GLY GLU GLU THR GLN ARG TYR SEQRES 5 A 478 CYS THR ASP THR GLY VAL LEU PHE ARG GLN GLU SER PHE SEQRES 6 A 478 PHE HIS TRP ALA PHE GLY VAL THR GLU PRO GLY CYS TYR SEQRES 7 A 478 GLY VAL ILE ASP VAL ASP THR GLY LYS SER THR LEU PHE SEQRES 8 A 478 VAL PRO ARG LEU PRO ALA SER HIS ALA THR TRP MET GLY SEQRES 9 A 478 LYS ILE HIS SER LYS GLU HIS PHE LYS GLU LYS TYR ALA SEQRES 10 A 478 VAL ASP ASP VAL GLN TYR VAL ASP GLU ILE ALA SER VAL SEQRES 11 A 478 LEU THR SER GLN LYS PRO SER VAL LEU LEU THR LEU ARG SEQRES 12 A 478 GLY VAL ASN THR ASP SER GLY SER VAL CYS ARG GLU ALA SEQRES 13 A 478 SER PHE ASP GLY ILE SER LYS PHE GLU VAL ASN ASN THR SEQRES 14 A 478 ILE LEU HIS PRO GLU ILE VAL GLU CYS ARG VAL PHE LYS SEQRES 15 A 478 THR ASP MET GLU LEU GLU VAL LEU ARG TYR THR ASN LYS SEQRES 16 A 478 ILE SER SER GLU ALA HIS ARG GLU VAL MET LYS ALA VAL SEQRES 17 A 478 LYS VAL GLY MET LYS GLU TYR GLU LEU GLU SER LEU PHE SEQRES 18 A 478 GLU HIS TYR CYS TYR SER ARG GLY GLY MET ARG HIS SER SEQRES 19 A 478 SER TYR THR CYS ILE CYS GLY SER GLY GLU ASN SER ALA SEQRES 20 A 478 VAL LEU HIS TYR GLY HIS ALA GLY ALA PRO ASN ASP ARG SEQRES 21 A 478 THR ILE GLN ASN GLY ASP MET CYS LEU PHE ASP MET GLY SEQRES 22 A 478 GLY GLU TYR TYR CYS PHE ALA SER ASP ILE THR CYS SER SEQRES 23 A 478 PHE PRO ALA ASN GLY LYS PHE THR ALA ASP GLN LYS ALA SEQRES 24 A 478 VAL TYR GLU ALA VAL LEU ARG SER SER ARG ALA VAL MET SEQRES 25 A 478 GLY ALA MET LYS PRO GLY VAL TRP TRP PRO ASP MET HIS SEQRES 26 A 478 ARG LEU ALA ASP ARG ILE HIS LEU GLU GLU LEU ALA HIS SEQRES 27 A 478 MET GLY ILE LEU SER GLY SER VAL ASP ALA MET VAL GLN SEQRES 28 A 478 ALA HIS LEU GLY ALA VAL PHE MET PRO HIS GLY LEU GLY SEQRES 29 A 478 HIS PHE LEU GLY ILE ASP VAL HIS ASP VAL GLY GLY TYR SEQRES 30 A 478 PRO GLU GLY VAL GLU ARG ILE ASP GLU PRO GLY LEU ARG SEQRES 31 A 478 SER LEU ARG THR ALA ARG HIS LEU GLN PRO GLY MET VAL SEQRES 32 A 478 LEU THR VAL GLU PRO GLY ILE TYR PHE ILE ASP HIS LEU SEQRES 33 A 478 LEU ASP GLU ALA LEU ALA ASP PRO ALA ARG ALA SER PHE SEQRES 34 A 478 LEU ASN ARG GLU VAL LEU GLN ARG PHE ARG GLY PHE GLY SEQRES 35 A 478 GLY VAL ARG ILE GLU ASP VAL VAL VAL THR ASP SER GLY SEQRES 36 A 478 ILE GLU LEU LEU THR CYS VAL PRO ARG THR VAL GLU GLU SEQRES 37 A 478 ILE GLU ALA CYS MET ALA GLY CYS ASP LYS SEQRES 1 B 478 GLY PRO SER PHE TRP LEU GLY ASN GLU THR LEU LYS VAL SEQRES 2 B 478 PRO LEU ALA LEU PHE ALA LEU ASN ARG GLN ARG LEU CYS SEQRES 3 B 478 GLU ARG LEU ARG LYS ASN PRO ALA VAL GLN ALA GLY SER SEQRES 4 B 478 ILE VAL VAL LEU GLN GLY GLY GLU GLU THR GLN ARG TYR SEQRES 5 B 478 CYS THR ASP THR GLY VAL LEU PHE ARG GLN GLU SER PHE SEQRES 6 B 478 PHE HIS TRP ALA PHE GLY VAL THR GLU PRO GLY CYS TYR SEQRES 7 B 478 GLY VAL ILE ASP VAL ASP THR GLY LYS SER THR LEU PHE SEQRES 8 B 478 VAL PRO ARG LEU PRO ALA SER HIS ALA THR TRP MET GLY SEQRES 9 B 478 LYS ILE HIS SER LYS GLU HIS PHE LYS GLU LYS TYR ALA SEQRES 10 B 478 VAL ASP ASP VAL GLN TYR VAL ASP GLU ILE ALA SER VAL SEQRES 11 B 478 LEU THR SER GLN LYS PRO SER VAL LEU LEU THR LEU ARG SEQRES 12 B 478 GLY VAL ASN THR ASP SER GLY SER VAL CYS ARG GLU ALA SEQRES 13 B 478 SER PHE ASP GLY ILE SER LYS PHE GLU VAL ASN ASN THR SEQRES 14 B 478 ILE LEU HIS PRO GLU ILE VAL GLU CYS ARG VAL PHE LYS SEQRES 15 B 478 THR ASP MET GLU LEU GLU VAL LEU ARG TYR THR ASN LYS SEQRES 16 B 478 ILE SER SER GLU ALA HIS ARG GLU VAL MET LYS ALA VAL SEQRES 17 B 478 LYS VAL GLY MET LYS GLU TYR GLU LEU GLU SER LEU PHE SEQRES 18 B 478 GLU HIS TYR CYS TYR SER ARG GLY GLY MET ARG HIS SER SEQRES 19 B 478 SER TYR THR CYS ILE CYS GLY SER GLY GLU ASN SER ALA SEQRES 20 B 478 VAL LEU HIS TYR GLY HIS ALA GLY ALA PRO ASN ASP ARG SEQRES 21 B 478 THR ILE GLN ASN GLY ASP MET CYS LEU PHE ASP MET GLY SEQRES 22 B 478 GLY GLU TYR TYR CYS PHE ALA SER ASP ILE THR CYS SER SEQRES 23 B 478 PHE PRO ALA ASN GLY LYS PHE THR ALA ASP GLN LYS ALA SEQRES 24 B 478 VAL TYR GLU ALA VAL LEU ARG SER SER ARG ALA VAL MET SEQRES 25 B 478 GLY ALA MET LYS PRO GLY VAL TRP TRP PRO ASP MET HIS SEQRES 26 B 478 ARG LEU ALA ASP ARG ILE HIS LEU GLU GLU LEU ALA HIS SEQRES 27 B 478 MET GLY ILE LEU SER GLY SER VAL ASP ALA MET VAL GLN SEQRES 28 B 478 ALA HIS LEU GLY ALA VAL PHE MET PRO HIS GLY LEU GLY SEQRES 29 B 478 HIS PHE LEU GLY ILE ASP VAL HIS ASP VAL GLY GLY TYR SEQRES 30 B 478 PRO GLU GLY VAL GLU ARG ILE ASP GLU PRO GLY LEU ARG SEQRES 31 B 478 SER LEU ARG THR ALA ARG HIS LEU GLN PRO GLY MET VAL SEQRES 32 B 478 LEU THR VAL GLU PRO GLY ILE TYR PHE ILE ASP HIS LEU SEQRES 33 B 478 LEU ASP GLU ALA LEU ALA ASP PRO ALA ARG ALA SER PHE SEQRES 34 B 478 LEU ASN ARG GLU VAL LEU GLN ARG PHE ARG GLY PHE GLY SEQRES 35 B 478 GLY VAL ARG ILE GLU ASP VAL VAL VAL THR ASP SER GLY SEQRES 36 B 478 ILE GLU LEU LEU THR CYS VAL PRO ARG THR VAL GLU GLU SEQRES 37 B 478 ILE GLU ALA CYS MET ALA GLY CYS ASP LYS HET MN A 499 1 HET MN A 500 1 HET OH A 501 1 HET GLY A 503 4 HET PRO A 504 8 HET GOL A 506 6 HET MN B 499 1 HET MN B 500 1 HET OH B 501 1 HET GLY B 503 4 HET PRO B 504 8 HET GOL B 506 6 HETNAM MN MANGANESE (II) ION HETNAM OH HYDROXIDE ION HETNAM GLY GLYCINE HETNAM PRO PROLINE HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 MN 4(MN 2+) FORMUL 5 OH 2(H O 1-) FORMUL 6 GLY 2(C2 H5 N O2) FORMUL 7 PRO 2(C5 H9 N O2) FORMUL 8 GOL 2(C3 H8 O3) FORMUL 15 HOH *961(H2 O) HELIX 1 AA1 LEU A 20 ASN A 37 1 18 HELIX 2 AA2 GLU A 68 GLY A 76 1 9 HELIX 3 AA3 SER A 103 MET A 108 1 6 HELIX 4 AA4 SER A 113 ALA A 122 1 10 HELIX 5 AA5 GLU A 131 GLN A 139 1 9 HELIX 6 AA6 GLY A 165 PHE A 169 5 5 HELIX 7 AA7 ILE A 175 PHE A 186 1 12 HELIX 8 AA8 THR A 188 VAL A 213 1 26 HELIX 9 AA9 LYS A 218 GLY A 235 1 18 HELIX 10 AB1 GLU A 249 VAL A 253 5 5 HELIX 11 AB2 THR A 299 MET A 320 1 22 HELIX 12 AB3 TRP A 325 MET A 344 1 20 HELIX 13 AB4 SER A 350 ALA A 357 1 8 HELIX 14 AB5 LEU A 359 MET A 364 1 6 HELIX 15 AB6 GLY A 393 LEU A 397 5 5 HELIX 16 AB7 ILE A 418 ASP A 428 1 11 HELIX 17 AB8 ASP A 428 SER A 433 1 6 HELIX 18 AB9 ASN A 436 GLN A 441 1 6 HELIX 19 AC1 ARG A 442 ARG A 444 5 3 HELIX 20 AC2 THR A 470 ALA A 479 1 10 HELIX 21 AC3 LEU B 20 ASN B 37 1 18 HELIX 22 AC4 GLU B 68 GLY B 76 1 9 HELIX 23 AC5 SER B 103 MET B 108 1 6 HELIX 24 AC6 SER B 113 ALA B 122 1 10 HELIX 25 AC7 GLU B 131 LYS B 140 1 10 HELIX 26 AC8 GLY B 165 PHE B 169 5 5 HELIX 27 AC9 ILE B 175 PHE B 186 1 12 HELIX 28 AD1 THR B 188 VAL B 213 1 26 HELIX 29 AD2 LYS B 218 GLY B 235 1 18 HELIX 30 AD3 GLU B 249 VAL B 253 5 5 HELIX 31 AD4 THR B 299 MET B 320 1 22 HELIX 32 AD5 TRP B 325 MET B 344 1 20 HELIX 33 AD6 SER B 350 ALA B 357 1 8 HELIX 34 AD7 LEU B 359 MET B 364 1 6 HELIX 35 AD8 GLY B 393 LEU B 397 5 5 HELIX 36 AD9 ILE B 418 ASP B 428 1 11 HELIX 37 AE1 ASP B 428 SER B 433 1 6 HELIX 38 AE2 ASN B 436 GLN B 441 1 6 HELIX 39 AE3 ARG B 442 ARG B 444 5 3 HELIX 40 AE4 THR B 470 ALA B 479 1 10 SHEET 1 AA1 2 SER A 8 PHE A 9 0 SHEET 2 AA1 2 VAL A 18 PRO A 19 -1 O VAL A 18 N PHE A 9 SHEET 1 AA2 6 ASP A 125 TYR A 128 0 SHEET 2 AA2 6 SER A 93 VAL A 97 1 N LEU A 95 O ASP A 125 SHEET 3 AA2 6 TYR A 83 ASP A 87 -1 N TYR A 83 O PHE A 96 SHEET 4 AA2 6 ILE A 45 GLN A 49 -1 N LEU A 48 O GLY A 84 SHEET 5 AA2 6 LEU A 144 LEU A 145 1 O LEU A 145 N VAL A 47 SHEET 6 AA2 6 VAL A 171 ASN A 172 1 O ASN A 172 N LEU A 144 SHEET 1 AA3 2 THR A 54 GLN A 55 0 SHEET 2 AA3 2 GLY A 62 VAL A 63 -1 O VAL A 63 N THR A 54 SHEET 1 AA4 2 GLY A 149 VAL A 150 0 SHEET 2 AA4 2 VAL A 157 CYS A 158 -1 O CYS A 158 N GLY A 149 SHEET 1 AA5 2 HIS A 238 SER A 239 0 SHEET 2 AA5 2 GLY A 279 GLU A 280 -1 O GLU A 280 N HIS A 238 SHEET 1 AA6 3 ILE A 244 SER A 247 0 SHEET 2 AA6 3 MET A 272 MET A 277 -1 O ASP A 276 N ILE A 244 SHEET 3 AA6 3 ILE A 288 PRO A 293 -1 O PHE A 292 N CYS A 273 SHEET 1 AA7 3 VAL A 408 VAL A 411 0 SHEET 2 AA7 3 ASP A 453 THR A 457 -1 O VAL A 455 N LEU A 409 SHEET 3 AA7 3 ILE A 461 LEU A 463 -1 O GLU A 462 N VAL A 456 SHEET 1 AA8 2 GLY A 414 TYR A 416 0 SHEET 2 AA8 2 GLY A 448 ARG A 450 -1 O VAL A 449 N ILE A 415 SHEET 1 AA9 2 SER B 8 PHE B 9 0 SHEET 2 AA9 2 VAL B 18 PRO B 19 -1 O VAL B 18 N PHE B 9 SHEET 1 AB1 6 ASP B 125 TYR B 128 0 SHEET 2 AB1 6 SER B 93 VAL B 97 1 N VAL B 97 O GLN B 127 SHEET 3 AB1 6 TYR B 83 ASP B 87 -1 N TYR B 83 O PHE B 96 SHEET 4 AB1 6 ILE B 45 GLN B 49 -1 N LEU B 48 O GLY B 84 SHEET 5 AB1 6 LEU B 144 LEU B 145 1 O LEU B 145 N ILE B 45 SHEET 6 AB1 6 VAL B 171 ASN B 172 1 O ASN B 172 N LEU B 144 SHEET 1 AB2 2 THR B 54 GLN B 55 0 SHEET 2 AB2 2 GLY B 62 VAL B 63 -1 O VAL B 63 N THR B 54 SHEET 1 AB3 2 GLY B 149 VAL B 150 0 SHEET 2 AB3 2 VAL B 157 CYS B 158 -1 O CYS B 158 N GLY B 149 SHEET 1 AB4 2 HIS B 238 SER B 239 0 SHEET 2 AB4 2 GLY B 279 GLU B 280 -1 O GLU B 280 N HIS B 238 SHEET 1 AB5 3 ILE B 244 SER B 247 0 SHEET 2 AB5 3 MET B 272 MET B 277 -1 O LEU B 274 N GLY B 246 SHEET 3 AB5 3 ILE B 288 PRO B 293 -1 O PHE B 292 N CYS B 273 SHEET 1 AB6 3 VAL B 408 VAL B 411 0 SHEET 2 AB6 3 ASP B 453 THR B 457 -1 O VAL B 455 N LEU B 409 SHEET 3 AB6 3 ILE B 461 LEU B 463 -1 O GLU B 462 N VAL B 456 SHEET 1 AB7 2 GLY B 414 TYR B 416 0 SHEET 2 AB7 2 GLY B 448 ARG B 450 -1 O VAL B 449 N ILE B 415 SSBOND 1 CYS A 58 CYS B 158 1555 1555 2.05 SSBOND 2 CYS A 158 CYS B 58 1555 1555 2.05 SSBOND 3 CYS A 481 CYS A 481 1555 3555 2.03 SSBOND 4 CYS B 481 CYS B 481 1555 3555 2.02 LINK OD1 ASP A 276 MN MN A 500 1555 1555 2.10 LINK OD2 ASP A 276 MN MN A 500 1555 1555 2.35 LINK OD2 ASP A 287 MN MN A 499 1555 1555 2.47 LINK OD1 ASP A 287 MN MN A 500 1555 1555 2.36 LINK NE2 HIS A 370 MN MN A 499 1555 1555 2.42 LINK OE2 GLU A 412 MN MN A 499 1555 1555 2.49 LINK OE2 GLU A 452 MN MN A 499 1555 1555 2.60 LINK MN MN A 499 O OH A 501 1555 1555 2.29 LINK MN MN A 499 O GLY A 503 1555 1555 2.53 LINK MN MN A 500 O OH A 501 1555 1555 1.77 LINK MN MN A 500 N GLY A 503 1555 1555 2.48 LINK OD1 ASP B 276 MN MN B 500 1555 1555 2.06 LINK OD2 ASP B 276 MN MN B 500 1555 1555 2.18 LINK OD2 ASP B 287 MN MN B 499 1555 1555 2.47 LINK OD1 ASP B 287 MN MN B 500 1555 1555 2.31 LINK NE2 HIS B 370 MN MN B 499 1555 1555 2.32 LINK OE2 GLU B 412 MN MN B 499 1555 1555 2.34 LINK OE2 GLU B 452 MN MN B 499 1555 1555 2.47 LINK OE1 GLU B 452 MN MN B 500 1555 1555 2.63 LINK MN MN B 499 O OH B 501 1555 1555 2.66 LINK MN MN B 499 O GLY B 503 1555 1555 2.76 LINK MN MN B 500 N GLY B 503 1555 1555 2.80 SITE 1 AC1 7 ASP A 287 HIS A 370 GLU A 412 GLU A 452 SITE 2 AC1 7 MN A 500 OH A 501 GLY A 503 SITE 1 AC2 7 TYR A 241 ASP A 276 ASP A 287 GLU A 452 SITE 2 AC2 7 MN A 499 OH A 501 GLY A 503 SITE 1 AC3 8 ASP A 276 ASP A 287 GLU A 412 GLU A 452 SITE 2 AC3 8 MN A 499 MN A 500 GLY A 503 PRO A 504 SITE 1 AC4 10 TYR A 241 ILE A 244 ASP A 276 ASP A 287 SITE 2 AC4 10 HIS A 370 HIS A 377 MN A 499 MN A 500 SITE 3 AC4 10 OH A 501 PRO A 504 SITE 1 AC5 11 LEU A 254 HIS A 255 HIS A 366 HIS A 377 SITE 2 AC5 11 ARG A 398 GLU A 412 ARG A 450 OH A 501 SITE 3 AC5 11 GLY A 503 HOH A 657 HOH A 752 SITE 1 AC6 6 THR A 152 ARG A 388 HOH A 602 HOH A 642 SITE 2 AC6 6 HOH A 731 HOH A 934 SITE 1 AC7 7 ASP B 287 HIS B 370 GLU B 412 GLU B 452 SITE 2 AC7 7 MN B 500 OH B 501 GLY B 503 SITE 1 AC8 8 TYR B 241 ASP B 276 ASP B 287 THR B 289 SITE 2 AC8 8 GLU B 452 MN B 499 OH B 501 GLY B 503 SITE 1 AC9 8 ASP B 276 ASP B 287 GLU B 412 GLU B 452 SITE 2 AC9 8 MN B 499 MN B 500 GLY B 503 PRO B 504 SITE 1 AD1 10 TYR B 241 ASP B 276 ASP B 287 HIS B 370 SITE 2 AD1 10 HIS B 377 MN B 499 MN B 500 OH B 501 SITE 3 AD1 10 PRO B 504 HOH B 636 SITE 1 AD2 11 LEU B 254 HIS B 255 HIS B 366 HIS B 377 SITE 2 AD2 11 ARG B 398 GLU B 412 ARG B 450 OH B 501 SITE 3 AD2 11 GLY B 503 HOH B 690 HOH B 709 SITE 1 AD3 4 LYS B 114 GLU B 115 ASP B 125 VAL B 126 CRYST1 103.779 108.043 211.341 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009636 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009256 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004732 0.00000