HEADER CELL CYCLE 14-NOV-16 5MEB TITLE CRYSTAL STRUCTURE OF YEAST CDT1 C-TERMINAL DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: CELL DIVISION CYCLE PROTEIN CDT1; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 495-604; COMPND 5 SYNONYM: SIC1 INDISPENSABLE PROTEIN 2,TOPOISOMERASE-A HYPERSENSITIVE COMPND 6 PROTEIN 11; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 GENE: TAH11, CDT1, SID2, YJR046W, J1641; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS CDT1, MCM, WINGED HELIX, YEAST, DNA REPLICATION, CELL CYCLE EXPDTA X-RAY DIFFRACTION AUTHOR V.E.PYE,J.FRIGOLA,J.F.X.DIFFLEY,P.CHEREPANOV REVDAT 2 05-JUL-17 5MEB 1 JRNL REVDAT 1 17-MAY-17 5MEB 0 JRNL AUTH J.FRIGOLA,J.HE,K.KINKELIN,V.E.PYE,L.RENAULT,M.E.DOUGLAS, JRNL AUTH 2 D.REMUS,P.CHEREPANOV,A.COSTA,J.F.X.DIFFLEY JRNL TITL CDT1 STABILIZES AN OPEN MCM RING FOR HELICASE LOADING. JRNL REF NAT COMMUN V. 8 15720 2017 JRNL REFN ESSN 2041-1723 JRNL PMID 28643783 JRNL DOI 10.1038/NCOMMS15720 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8.4_1496 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.60 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.450 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 31905 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.185 REMARK 3 R VALUE (WORKING SET) : 0.184 REMARK 3 FREE R VALUE : 0.210 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.060 REMARK 3 FREE R VALUE TEST SET COUNT : 3116 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 44.6087 - 5.0414 0.99 2579 150 0.2034 0.2170 REMARK 3 2 5.0414 - 4.0023 1.00 2608 130 0.1533 0.1733 REMARK 3 3 4.0023 - 3.4966 1.00 2612 168 0.1541 0.1760 REMARK 3 4 3.4966 - 3.1770 1.00 2574 142 0.1603 0.2058 REMARK 3 5 3.1770 - 2.9494 1.00 2617 133 0.1778 0.1772 REMARK 3 6 2.9494 - 2.7755 1.00 2621 121 0.1841 0.2075 REMARK 3 7 2.7755 - 2.6365 1.00 2619 142 0.1753 0.2024 REMARK 3 8 2.6365 - 2.5218 1.00 2560 159 0.1772 0.2057 REMARK 3 9 2.5218 - 2.4247 1.00 2605 124 0.1876 0.2311 REMARK 3 10 2.4247 - 2.3410 1.00 2652 95 0.1931 0.2771 REMARK 3 11 2.3410 - 2.2678 1.00 2598 135 0.1837 0.2275 REMARK 3 12 2.2678 - 2.2030 1.00 2588 135 0.1855 0.2155 REMARK 3 13 2.2030 - 2.1450 0.99 2638 141 0.1875 0.2538 REMARK 3 14 2.1450 - 2.0927 1.00 2578 138 0.1824 0.2258 REMARK 3 15 2.0927 - 2.0451 0.99 2594 131 0.1836 0.2122 REMARK 3 16 2.0451 - 2.0016 1.00 2600 141 0.2036 0.2034 REMARK 3 17 2.0016 - 1.9615 0.99 2581 141 0.2244 0.2142 REMARK 3 18 1.9615 - 1.9245 1.00 2604 158 0.2219 0.2478 REMARK 3 19 1.9245 - 1.8902 0.99 2558 142 0.2503 0.3067 REMARK 3 20 1.8902 - 1.8581 1.00 2604 138 0.2608 0.2816 REMARK 3 21 1.8581 - 1.8281 1.00 2537 137 0.2833 0.2955 REMARK 3 22 1.8281 - 1.8000 0.99 2633 146 0.2895 0.2955 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.190 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.100 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.013 1877 REMARK 3 ANGLE : 1.249 2543 REMARK 3 CHIRALITY : 0.061 283 REMARK 3 PLANARITY : 0.005 324 REMARK 3 DIHEDRAL : 13.948 734 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 493:513) REMARK 3 ORIGIN FOR THE GROUP (A): 29.9943 54.6815 63.2003 REMARK 3 T TENSOR REMARK 3 T11: 0.4178 T22: 0.4128 REMARK 3 T33: 0.2984 T12: -0.0311 REMARK 3 T13: 0.0666 T23: -0.0181 REMARK 3 L TENSOR REMARK 3 L11: 1.0628 L22: 1.1736 REMARK 3 L33: 0.5511 L12: 0.5218 REMARK 3 L13: -0.0427 L23: 0.4478 REMARK 3 S TENSOR REMARK 3 S11: -0.0693 S12: -0.2601 S13: -0.2136 REMARK 3 S21: 0.3520 S22: -0.2155 S23: 0.2290 REMARK 3 S31: 0.5610 S32: -0.6042 S33: -0.0001 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 514:586) REMARK 3 ORIGIN FOR THE GROUP (A): 42.3171 59.9104 45.8245 REMARK 3 T TENSOR REMARK 3 T11: 0.1355 T22: 0.1423 REMARK 3 T33: 0.1334 T12: -0.0176 REMARK 3 T13: -0.0076 T23: 0.0018 REMARK 3 L TENSOR REMARK 3 L11: 5.0217 L22: 3.0478 REMARK 3 L33: 1.5861 L12: 0.1311 REMARK 3 L13: 0.6540 L23: -0.5594 REMARK 3 S TENSOR REMARK 3 S11: 0.0897 S12: -0.1081 S13: -0.1903 REMARK 3 S21: 0.0456 S22: -0.0637 S23: -0.0327 REMARK 3 S31: 0.0516 S32: -0.0414 S33: -0.0066 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 587:604) REMARK 3 ORIGIN FOR THE GROUP (A): 31.2753 47.7548 47.3732 REMARK 3 T TENSOR REMARK 3 T11: 0.3282 T22: 0.2520 REMARK 3 T33: 0.3215 T12: -0.0013 REMARK 3 T13: 0.0178 T23: -0.0613 REMARK 3 L TENSOR REMARK 3 L11: 0.9920 L22: 1.3390 REMARK 3 L33: 0.3634 L12: -0.1478 REMARK 3 L13: -0.0478 L23: 0.2426 REMARK 3 S TENSOR REMARK 3 S11: -0.3124 S12: -0.2440 S13: 0.0844 REMARK 3 S21: 0.6994 S22: 0.0649 S23: 0.2518 REMARK 3 S31: -0.3976 S32: -0.2340 S33: 0.0006 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN B AND RESID 493:514) REMARK 3 ORIGIN FOR THE GROUP (A): 28.3563 30.0654 26.7729 REMARK 3 T TENSOR REMARK 3 T11: 0.3488 T22: 0.3248 REMARK 3 T33: 0.2671 T12: 0.0301 REMARK 3 T13: 0.0007 T23: 0.0072 REMARK 3 L TENSOR REMARK 3 L11: 0.6352 L22: 0.1829 REMARK 3 L33: 0.5880 L12: -0.5683 REMARK 3 L13: 0.2018 L23: -0.1289 REMARK 3 S TENSOR REMARK 3 S11: 0.0040 S12: 0.1475 S13: 0.1322 REMARK 3 S21: -0.1458 S22: -0.1281 S23: 0.0153 REMARK 3 S31: -0.1955 S32: -0.2123 S33: -0.0003 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN B AND RESID 515:584) REMARK 3 ORIGIN FOR THE GROUP (A): 41.0661 25.4615 42.5307 REMARK 3 T TENSOR REMARK 3 T11: 0.1444 T22: 0.1367 REMARK 3 T33: 0.1204 T12: 0.0162 REMARK 3 T13: 0.0105 T23: -0.0022 REMARK 3 L TENSOR REMARK 3 L11: 4.3117 L22: 2.5186 REMARK 3 L33: 1.7543 L12: -0.8668 REMARK 3 L13: -0.5136 L23: -0.4945 REMARK 3 S TENSOR REMARK 3 S11: 0.0995 S12: 0.1781 S13: 0.0507 REMARK 3 S21: -0.0441 S22: -0.0557 S23: -0.0009 REMARK 3 S31: 0.0069 S32: 0.0092 S33: -0.0021 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN B AND RESID 585:601) REMARK 3 ORIGIN FOR THE GROUP (A): 30.0127 37.1446 43.1725 REMARK 3 T TENSOR REMARK 3 T11: 0.2945 T22: 0.2255 REMARK 3 T33: 0.3501 T12: 0.0409 REMARK 3 T13: -0.0089 T23: -0.0281 REMARK 3 L TENSOR REMARK 3 L11: 0.7406 L22: 1.2837 REMARK 3 L33: 0.2983 L12: -0.0303 REMARK 3 L13: -0.1852 L23: 0.5731 REMARK 3 S TENSOR REMARK 3 S11: 0.0521 S12: 0.1379 S13: 0.2411 REMARK 3 S21: -0.3483 S22: -0.2971 S23: 0.2720 REMARK 3 S31: 0.0892 S32: -0.3733 S33: -0.0001 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5MEB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 14-NOV-16. REMARK 100 THE DEPOSITION ID IS D_1200002330. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-JUN-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97246 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31908 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 45.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 18.00 REMARK 200 R MERGE (I) : 0.11000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.85 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.9 REMARK 200 DATA REDUNDANCY IN SHELL : 18.40 REMARK 200 R MERGE FOR SHELL (I) : 1.91000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.910 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHENIX PHENIX.AUTOSOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: 64.94 REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.17 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.51 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% GLYCEROL, 0.1M MES PH 6.5, 1.8M REMARK 280 AMMONIUM SULPHATE, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 21.96500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 44.59500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 42.93500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 44.59500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 21.96500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 42.93500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN B 602 REMARK 465 GLN B 603 REMARK 465 ASP B 604 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP A 575 O HOH A 801 2.11 REMARK 500 OG1 THR A 551 O HOH A 802 2.13 REMARK 500 O HOH A 888 O HOH A 925 2.14 REMARK 500 O HOH B 769 O HOH B 823 2.16 REMARK 500 O HOH A 915 O HOH A 933 2.17 REMARK 500 O HOH A 903 O HOH B 812 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 926 O HOH A 933 4566 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 565 51.47 -115.56 REMARK 500 ASN A 584 -100.77 -106.70 REMARK 500 ILE B 549 127.15 -170.34 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 949 DISTANCE = 6.65 ANGSTROMS REMARK 525 HOH A 950 DISTANCE = 6.81 ANGSTROMS REMARK 525 HOH B 869 DISTANCE = 5.84 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 702 DBREF 5MEB A 495 604 UNP P47112 CDT1_YEAST 495 604 DBREF 5MEB B 495 604 UNP P47112 CDT1_YEAST 495 604 SEQADV 5MEB GLY A 493 UNP P47112 EXPRESSION TAG SEQADV 5MEB MSE A 494 UNP P47112 EXPRESSION TAG SEQADV 5MEB GLY B 493 UNP P47112 EXPRESSION TAG SEQADV 5MEB MSE B 494 UNP P47112 EXPRESSION TAG SEQRES 1 A 112 GLY MSE ALA ALA LEU LEU SER GLN ARG GLN LYS ARG TYR SEQRES 2 A 112 GLN GLN PHE LEU ALA MSE LYS MSE THR GLN VAL PHE ASP SEQRES 3 A 112 ILE LEU PHE SER LEU THR ARG GLY GLN PRO TYR THR GLU SEQRES 4 A 112 THR TYR LEU SER SER LEU ILE VAL ASP SER LEU GLN ASP SEQRES 5 A 112 SER ASN ASN PRO ILE GLY THR LYS GLU ALA SER GLU ILE SEQRES 6 A 112 LEU ALA GLY LEU GLN GLY ILE LEU PRO MSE ASP ILE SER SEQRES 7 A 112 VAL HIS GLN VAL ASP GLY GLY LEU LYS VAL TYR ARG TRP SEQRES 8 A 112 ASN SER LEU ASP LYS ASN ARG PHE SER LYS LEU LEU GLN SEQRES 9 A 112 ILE HIS LYS SER LYS GLN GLN ASP SEQRES 1 B 112 GLY MSE ALA ALA LEU LEU SER GLN ARG GLN LYS ARG TYR SEQRES 2 B 112 GLN GLN PHE LEU ALA MSE LYS MSE THR GLN VAL PHE ASP SEQRES 3 B 112 ILE LEU PHE SER LEU THR ARG GLY GLN PRO TYR THR GLU SEQRES 4 B 112 THR TYR LEU SER SER LEU ILE VAL ASP SER LEU GLN ASP SEQRES 5 B 112 SER ASN ASN PRO ILE GLY THR LYS GLU ALA SER GLU ILE SEQRES 6 B 112 LEU ALA GLY LEU GLN GLY ILE LEU PRO MSE ASP ILE SER SEQRES 7 B 112 VAL HIS GLN VAL ASP GLY GLY LEU LYS VAL TYR ARG TRP SEQRES 8 B 112 ASN SER LEU ASP LYS ASN ARG PHE SER LYS LEU LEU GLN SEQRES 9 B 112 ILE HIS LYS SER LYS GLN GLN ASP MODRES 5MEB MSE A 511 MET MODIFIED RESIDUE MODRES 5MEB MSE A 513 MET MODIFIED RESIDUE MODRES 5MEB MSE A 567 MET MODIFIED RESIDUE MODRES 5MEB MSE B 511 MET MODIFIED RESIDUE MODRES 5MEB MSE B 513 MET MODIFIED RESIDUE MODRES 5MEB MSE B 567 MET MODIFIED RESIDUE HET MSE A 494 13 HET MSE A 511 13 HET MSE A 513 8 HET MSE A 567 8 HET MSE B 494 8 HET MSE B 511 13 HET MSE B 513 8 HET MSE B 567 8 HET SO4 A 701 5 HET SO4 A 702 5 HETNAM MSE SELENOMETHIONINE HETNAM SO4 SULFATE ION FORMUL 1 MSE 8(C5 H11 N O2 SE) FORMUL 3 SO4 2(O4 S 2-) FORMUL 5 HOH *319(H2 O) HELIX 1 AA1 GLY A 493 LEU A 523 1 31 HELIX 2 AA2 GLU A 531 GLN A 543 1 13 HELIX 3 AA3 GLY A 550 LEU A 565 1 16 HELIX 4 AA4 ASP A 587 GLN A 603 1 17 HELIX 5 AA5 MSE B 494 LEU B 523 1 30 HELIX 6 AA6 GLU B 531 GLN B 543 1 13 HELIX 7 AA7 GLY B 550 LEU B 565 1 16 HELIX 8 AA8 ASP B 587 SER B 600 1 14 SHEET 1 AA1 3 TYR A 529 THR A 530 0 SHEET 2 AA1 3 VAL A 580 TRP A 583 -1 O TYR A 581 N TYR A 529 SHEET 3 AA1 3 ILE A 569 HIS A 572 -1 N SER A 570 O ARG A 582 SHEET 1 AA2 3 TYR B 529 THR B 530 0 SHEET 2 AA2 3 LYS B 579 TRP B 583 -1 O TYR B 581 N TYR B 529 SHEET 3 AA2 3 ILE B 569 GLN B 573 -1 N SER B 570 O ARG B 582 LINK C GLY A 493 N MSE A 494 1555 1555 1.33 LINK C MSE A 494 N ALA A 495 1555 1555 1.34 LINK C ALA A 510 N MSE A 511 1555 1555 1.33 LINK C MSE A 511 N LYS A 512 1555 1555 1.33 LINK C LYS A 512 N MSE A 513 1555 1555 1.32 LINK C MSE A 513 N THR A 514 1555 1555 1.32 LINK C PRO A 566 N MSE A 567 1555 1555 1.33 LINK C MSE A 567 N ASP A 568 1555 1555 1.33 LINK C GLY B 493 N MSE B 494 1555 1555 1.33 LINK C MSE B 494 N ALA B 495 1555 1555 1.33 LINK C ALA B 510 N MSE B 511 1555 1555 1.35 LINK C MSE B 511 N LYS B 512 1555 1555 1.34 LINK C LYS B 512 N MSE B 513 1555 1555 1.32 LINK C MSE B 513 N THR B 514 1555 1555 1.34 LINK C PRO B 566 N MSE B 567 1555 1555 1.33 LINK C MSE B 567 N ASP B 568 1555 1555 1.34 SITE 1 AC1 4 ARG A 501 ARG A 504 HOH A 842 ARG B 501 SITE 1 AC2 4 ARG A 501 HOH A 816 ARG B 501 ARG B 504 CRYST1 43.930 85.870 89.190 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022763 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011646 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011212 0.00000