HEADER IMMUNE SYSTEM 16-NOV-16 5MEV TITLE MCL1 FAB COMPLEX IN COMPLEX WITH COMPOUND 21 COMPND MOL_ID: 1; COMPND 2 MOLECULE: INDUCED MYELOID LEUKEMIA CELL DIFFERENTIATION PROTEIN MCL-1 COMPND 3 HOMOLOG,INDUCED MYELOID LEUKEMIA CELL DIFFERENTIATION PROTEIN MCL-1; COMPND 4 CHAIN: A; COMPND 5 SYNONYM: BCL-2-RELATED PROTEIN EAT/MCL1,BCL-2-LIKE PROTEIN 3,BCL2-L- COMPND 6 3,BCL-2-RELATED PROTEIN EAT/MCL1,MCL1/EAT; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: FAB HEAVY CHAIN; COMPND 10 CHAIN: H; COMPND 11 ENGINEERED: YES; COMPND 12 MOL_ID: 3; COMPND 13 MOLECULE: FAB LIGHT CHAIN; COMPND 14 CHAIN: L; COMPND 15 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS, HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: MOUSE, HUMAN; SOURCE 4 ORGANISM_TAXID: 10090, 9606; SOURCE 5 GENE: MCL1, MCL1, BCL2L3; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 13 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 14 MOL_ID: 3; SOURCE 15 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 16 ORGANISM_COMMON: HUMAN; SOURCE 17 ORGANISM_TAXID: 9606; SOURCE 18 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 19 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS MCL1 FAB MACROCYCLE, MCL1-FAB_55_C6HIS, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR D.HARGREAVES REVDAT 3 08-MAR-17 5MEV 1 SEQRES REVDAT 2 22-FEB-17 5MEV 1 JRNL REVDAT 1 18-JAN-17 5MEV 0 JRNL AUTH J.W.JOHANNES,S.BATES,C.BEIGIE,M.BELMONTE,J.BREEN,S.CAO, JRNL AUTH 2 P.A.CENTRELLA,M.A.CLARK,J.W.CUOZZO,C.E.DUMELIN,A.D.FERGUSON, JRNL AUTH 3 S.HABESHIAN,D.HARGREAVES,C.JOUBRAN,S.KAZMIRSKI,A.KEEFE, JRNL AUTH 4 M.L.LAMB,H.LAN,Y.LI,H.MA,S.MLYNARSKI,M.J.PACKER,P.RAWLINS, JRNL AUTH 5 D.W.ROBBINS,H.SHEN,E.A.SIGEL,H.H.SOUTTER,N.SU,D.M.TROST, JRNL AUTH 6 H.WANG,K.F.WICKSON,C.WU,Y.ZHANG,Q.ZHAO,X.ZHENG,A.HIRD JRNL TITL STRUCTURE BASED DESIGN OF NON-NATURAL PEPTIDIC MACROCYCLIC JRNL TITL 2 MCL-1 INHIBITORS JRNL REF ACS MED.CHEM.LETT. V. 8 239 2017 JRNL REFN ISSN 1948-5875 JRNL PMID 28197319 JRNL DOI 10.1021/ACSMEDCHEMLETT.6B00464 REMARK 2 REMARK 2 RESOLUTION. 2.94 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0135 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.94 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 26.45 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 3 NUMBER OF REFLECTIONS : 11314 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.229 REMARK 3 R VALUE (WORKING SET) : 0.225 REMARK 3 FREE R VALUE : 0.302 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 597 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.94 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.02 REMARK 3 REFLECTION IN BIN (WORKING SET) : 784 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.35 REMARK 3 BIN R VALUE (WORKING SET) : 0.4150 REMARK 3 BIN FREE R VALUE SET COUNT : 35 REMARK 3 BIN FREE R VALUE : 0.5520 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4354 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 51 REMARK 3 SOLVENT ATOMS : 83 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 83.87 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 56.54 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.65000 REMARK 3 B22 (A**2) : -0.60000 REMARK 3 B33 (A**2) : -0.18000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.21000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.572 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.424 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 23.329 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.921 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.864 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4505 ; 0.008 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 4184 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6125 ; 1.329 ; 1.940 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9653 ; 0.928 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 566 ; 6.605 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 177 ;39.744 ;23.729 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 720 ;18.327 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 26 ;15.266 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 691 ; 0.068 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5078 ; 0.004 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1018 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2280 ; 2.037 ; 5.647 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2278 ; 2.034 ; 5.646 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2840 ; 3.457 ; 8.461 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2841 ; 3.456 ; 8.462 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2225 ; 1.963 ; 5.750 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2226 ; 1.962 ; 5.751 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3286 ; 3.402 ; 8.530 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 4897 ; 6.562 ;43.251 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 4889 ; 6.545 ;43.281 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5MEV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 16-NOV-16. REMARK 100 THE DEPOSITION ID IS D_1200002366. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-MAY-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97626 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 X 1M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11919 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.940 REMARK 200 RESOLUTION RANGE LOW (A) : 28.900 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 200 DATA REDUNDANCY : 3.200 REMARK 200 R MERGE (I) : 0.13400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.94 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.01 REMARK 200 COMPLETENESS FOR SHELL (%) : 89.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.10 REMARK 200 R MERGE FOR SHELL (I) : 0.63700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.41 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.06 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 8K 10%W/V, PEG 1500 10%W/V, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 83.25700 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 19.85250 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 83.25700 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 19.85250 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5000 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24900 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -28.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, H, L REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 166 REMARK 465 PRO A 167 REMARK 465 LEU A 168 REMARK 465 GLY A 169 REMARK 465 SER A 170 REMARK 465 GLU A 171 REMARK 465 ASP A 323 REMARK 465 LEU A 324 REMARK 465 GLU A 325 REMARK 465 GLY A 326 REMARK 465 GLY A 327 REMARK 465 SER H 134 REMARK 465 ALA H 135 REMARK 465 ALA H 136 REMARK 465 GLN H 137 REMARK 465 THR H 138 REMARK 465 ASN H 139 REMARK 465 SER H 140 REMARK 465 PRO H 193 REMARK 465 ARG H 194 REMARK 465 PRO H 195 REMARK 465 SER H 196 REMARK 465 ARG H 219 REMARK 465 ASP H 220 REMARK 465 CYS H 221 REMARK 465 ALA H 222 REMARK 465 ALA H 223 REMARK 465 ALA H 224 REMARK 465 GLU H 225 REMARK 465 ASN H 226 REMARK 465 LEU H 227 REMARK 465 TYR H 228 REMARK 465 PHE H 229 REMARK 465 GLN H 230 REMARK 465 GLN L 1 REMARK 465 CYS L 215 REMARK 465 ALA L 216 REMARK 465 ALA L 217 REMARK 465 ALA L 218 REMARK 465 GLU L 219 REMARK 465 ASN L 220 REMARK 465 LEU L 221 REMARK 465 TYR L 222 REMARK 465 PHE L 223 REMARK 465 GLN L 224 REMARK 465 GLY L 225 REMARK 465 SER L 226 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP L 214 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 238 -53.66 -129.66 REMARK 500 SER A 255 79.78 -69.62 REMARK 500 ASP A 256 -26.54 175.51 REMARK 500 GLN A 309 39.31 -91.68 REMARK 500 SER H 30 -3.24 -58.85 REMARK 500 VAL H 48 -48.35 -131.74 REMARK 500 SER H 55 18.39 51.11 REMARK 500 LEU H 81 108.98 -160.08 REMARK 500 SER H 178 -120.82 64.58 REMARK 500 THR H 198 157.62 -37.07 REMARK 500 ASN L 28 -84.35 -98.31 REMARK 500 PRO L 41 -70.37 -23.49 REMARK 500 SER L 51 48.70 33.81 REMARK 500 ASN L 52 -52.10 85.57 REMARK 500 ASN L 53 11.67 -142.17 REMARK 500 ILE L 76 54.75 -108.09 REMARK 500 SER L 77 86.55 -56.01 REMARK 500 GLU L 82 45.59 -99.75 REMARK 500 ALA L 98 149.10 -171.02 REMARK 500 ASN L 174 -31.04 88.97 REMARK 500 CYS L 197 113.94 -162.95 REMARK 500 ALA L 213 86.05 -64.36 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 7LW A 401 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5MES RELATED DB: PDB REMARK 900 5MES MCL1 FAB COMPLEX WITH COMPOUND 29 REMARK 900 RELATED ID: 5KU9 RELATED DB: PDB REMARK 900 5KU9 MCL1 FAB COMPLEX WITH COMPOUND 1 DBREF 5MEV A 172 240 UNP P97287 MCL1_MOUSE 153 221 DBREF 5MEV A 241 327 UNP Q07820 MCL1_HUMAN 241 327 DBREF 5MEV H 1 230 PDB 5MEV 5MEV 1 230 DBREF 5MEV L 1 226 PDB 5MEV 5MEV 1 226 SEQADV 5MEV GLY A 166 UNP P97287 EXPRESSION TAG SEQADV 5MEV PRO A 167 UNP P97287 EXPRESSION TAG SEQADV 5MEV LEU A 168 UNP P97287 EXPRESSION TAG SEQADV 5MEV GLY A 169 UNP P97287 EXPRESSION TAG SEQADV 5MEV SER A 170 UNP P97287 EXPRESSION TAG SEQADV 5MEV GLU A 171 UNP P97287 EXPRESSION TAG SEQRES 1 A 162 GLY PRO LEU GLY SER GLU ASP ASP LEU TYR ARG GLN SER SEQRES 2 A 162 LEU GLU ILE ILE SER ARG TYR LEU ARG GLU GLN ALA THR SEQRES 3 A 162 GLY SER LYS ASP SER LYS PRO LEU GLY GLU ALA GLY ALA SEQRES 4 A 162 ALA GLY ARG ARG ALA LEU GLU THR LEU ARG ARG VAL GLY SEQRES 5 A 162 ASP GLY VAL GLN ARG ASN HIS GLU THR ALA PHE GLN GLY SEQRES 6 A 162 MET LEU ARG LYS LEU ASP ILE LYS ASN GLU ASP ASP VAL SEQRES 7 A 162 LYS SER LEU SER ARG VAL MET ILE HIS VAL PHE SER ASP SEQRES 8 A 162 GLY VAL THR ASN TRP GLY ARG ILE VAL THR LEU ILE SER SEQRES 9 A 162 PHE GLY ALA PHE VAL ALA LYS HIS LEU LYS THR ILE ASN SEQRES 10 A 162 GLN GLU SER CYS ILE GLU PRO LEU ALA GLU SER ILE THR SEQRES 11 A 162 ASP VAL LEU VAL ARG THR LYS ARG ASP TRP LEU VAL LYS SEQRES 12 A 162 GLN ARG GLY TRP ASP GLY PHE VAL GLU PHE PHE HIS VAL SEQRES 13 A 162 GLU ASP LEU GLU GLY GLY SEQRES 1 H 230 GLN VAL THR LEU LYS GLU SER GLY GLY GLY LEU VAL LYS SEQRES 2 H 230 PRO GLY GLY SER LEU ARG LEU SER CYS ALA ALA SER GLY SEQRES 3 H 230 PHE THR PHE SER SER TYR SER MET ASN TRP VAL ARG GLN SEQRES 4 H 230 ALA PRO GLY LYS GLY LEU GLU TRP VAL SER SER ILE SER SEQRES 5 H 230 SER SER SER SER TYR ILE TYR TYR ALA ASP SER VAL LYS SEQRES 6 H 230 GLY ARG PHE THR ILE SER ARG ASP ASN ALA LYS ASN SER SEQRES 7 H 230 LEU TYR LEU GLN MET ASN SER LEU ARG ALA GLU ASP THR SEQRES 8 H 230 ALA VAL TYR TYR CYS ALA ARG GLN VAL GLY ALA THR TRP SEQRES 9 H 230 ALA PHE ASP ILE TRP GLY GLN GLY THR LEU VAL THR VAL SEQRES 10 H 230 SER ALA ALA LYS THR THR PRO PRO SER VAL TYR PRO LEU SEQRES 11 H 230 ALA PRO GLY SER ALA ALA GLN THR ASN SER MET VAL THR SEQRES 12 H 230 LEU GLY CYS LEU VAL LYS GLY TYR PHE PRO GLU PRO VAL SEQRES 13 H 230 THR VAL THR TRP ASN SER GLY SER LEU SER SER GLY VAL SEQRES 14 H 230 HIS THR PHE PRO ALA VAL LEU GLN SER ASP LEU TYR THR SEQRES 15 H 230 LEU SER SER SER VAL THR VAL PRO SER SER PRO ARG PRO SEQRES 16 H 230 SER GLU THR VAL THR CYS ASN VAL ALA HIS PRO ALA SER SEQRES 17 H 230 SER THR LYS VAL ASP LYS LYS ILE VAL PRO ARG ASP CYS SEQRES 18 H 230 ALA ALA ALA GLU ASN LEU TYR PHE GLN SEQRES 1 L 226 GLN SER VAL LEU THR GLN PRO PRO SER ALA SER GLY THR SEQRES 2 L 226 PRO GLY GLN ARG VAL THR ILE SER CYS SER GLY SER SER SEQRES 3 L 226 SER ASN ILE GLY SER ASN THR VAL ASN TRP TYR GLN GLN SEQRES 4 L 226 LEU PRO GLY THR ALA PRO LYS LEU LEU ILE TYR SER ASN SEQRES 5 L 226 ASN GLN ARG PRO SER GLY VAL PRO ASP ARG PHE SER GLY SEQRES 6 L 226 SER LYS SER GLY THR SER ALA SER LEU ALA ILE SER GLY SEQRES 7 L 226 LEU GLN SER GLU ASP GLU ALA ASP TYR TYR CYS ALA ALA SEQRES 8 L 226 TRP ASP ASP SER LEU ASN ALA TRP VAL PHE GLY GLY GLY SEQRES 9 L 226 THR LYS LEU THR VAL LEU GLY GLN PRO LYS SER SER PRO SEQRES 10 L 226 SER VAL THR LEU PHE PRO PRO SER SER GLU GLU LEU GLU SEQRES 11 L 226 THR ASN LYS ALA THR LEU VAL CYS THR ILE THR ASP PHE SEQRES 12 L 226 TYR PRO GLY VAL VAL THR VAL ASP TRP LYS VAL ASP GLY SEQRES 13 L 226 THR PRO VAL THR GLN GLY MET GLU THR THR GLN PRO SER SEQRES 14 L 226 LYS GLN SER ASN ASN LYS TYR MET ALA SER SER TYR LEU SEQRES 15 L 226 THR LEU THR ALA ARG ALA TRP GLU ARG HIS SER SER TYR SEQRES 16 L 226 SER CYS GLN VAL THR HIS GLU GLY HIS THR VAL GLU LYS SEQRES 17 L 226 SER LEU SER ARG ALA ASP CYS ALA ALA ALA GLU ASN LEU SEQRES 18 L 226 TYR PHE GLN GLY SER HET 7LW A 401 51 HETNAM 7LW (5~{R},13~{S},17~{S})-5-[(3,4-DICHLOROPHENYL)METHYL]-8- HETNAM 2 7LW METHYL-13-[(4-METHYLSULFONYLPHENYL)METHYL]-1,4,8,12, HETNAM 3 7LW 16-PENTAZATRICYCLO[15.8.1.0^{20,25}]HEXACOSA-20,22,24- HETNAM 4 7LW TRIENE-3,7,15,26-TETRONE FORMUL 4 7LW C37 H43 CL2 N5 O6 S FORMUL 5 HOH *83(H2 O) HELIX 1 AA1 ASP A 172 GLY A 192 1 21 HELIX 2 AA2 GLY A 203 HIS A 224 1 22 HELIX 3 AA3 HIS A 224 LEU A 235 1 12 HELIX 4 AA4 ASN A 239 SER A 245 1 7 HELIX 5 AA5 LEU A 246 ILE A 251 1 6 HELIX 6 AA6 HIS A 252 PHE A 254 5 3 HELIX 7 AA7 ASN A 260 ILE A 281 1 22 HELIX 8 AA8 ILE A 287 ARG A 300 1 14 HELIX 9 AA9 LYS A 302 GLN A 309 1 8 HELIX 10 AB1 ARG A 310 HIS A 320 1 11 HELIX 11 AB2 THR H 28 TYR H 32 5 5 HELIX 12 AB3 ARG H 87 THR H 91 5 5 HELIX 13 AB4 SER H 162 SER H 164 5 3 HELIX 14 AB5 SER L 125 GLU L 130 1 6 HELIX 15 AB6 ALA L 186 ARG L 191 1 6 SHEET 1 AA1 4 THR H 3 SER H 7 0 SHEET 2 AA1 4 LEU H 18 SER H 25 -1 O SER H 21 N SER H 7 SHEET 3 AA1 4 SER H 78 MET H 83 -1 O MET H 83 N LEU H 18 SHEET 4 AA1 4 PHE H 68 ASP H 73 -1 N SER H 71 O TYR H 80 SHEET 1 AA2 6 LEU H 11 VAL H 12 0 SHEET 2 AA2 6 THR H 113 VAL H 117 1 O THR H 116 N VAL H 12 SHEET 3 AA2 6 ALA H 92 GLN H 99 -1 N ALA H 92 O VAL H 115 SHEET 4 AA2 6 SER H 33 GLN H 39 -1 N VAL H 37 O TYR H 95 SHEET 5 AA2 6 LEU H 45 ILE H 51 -1 O SER H 49 N TRP H 36 SHEET 6 AA2 6 ILE H 58 TYR H 60 -1 O TYR H 59 N SER H 50 SHEET 1 AA3 4 LEU H 11 VAL H 12 0 SHEET 2 AA3 4 THR H 113 VAL H 117 1 O THR H 116 N VAL H 12 SHEET 3 AA3 4 ALA H 92 GLN H 99 -1 N ALA H 92 O VAL H 115 SHEET 4 AA3 4 PHE H 106 TRP H 109 -1 O ILE H 108 N ARG H 98 SHEET 1 AA4 4 SER H 126 LEU H 130 0 SHEET 2 AA4 4 VAL H 142 TYR H 151 -1 O GLY H 145 N LEU H 130 SHEET 3 AA4 4 LEU H 180 VAL H 189 -1 O TYR H 181 N TYR H 151 SHEET 4 AA4 4 VAL H 169 THR H 171 -1 N HIS H 170 O SER H 186 SHEET 1 AA5 4 SER H 126 LEU H 130 0 SHEET 2 AA5 4 VAL H 142 TYR H 151 -1 O GLY H 145 N LEU H 130 SHEET 3 AA5 4 LEU H 180 VAL H 189 -1 O TYR H 181 N TYR H 151 SHEET 4 AA5 4 VAL H 175 GLN H 177 -1 N VAL H 175 O THR H 182 SHEET 1 AA6 3 THR H 157 TRP H 160 0 SHEET 2 AA6 3 VAL H 199 HIS H 205 -1 O ASN H 202 N THR H 159 SHEET 3 AA6 3 THR H 210 ILE H 216 -1 O LYS H 214 N CYS H 201 SHEET 1 AA7 2 SER L 11 GLY L 12 0 SHEET 2 AA7 2 THR L 108 VAL L 109 1 O THR L 108 N GLY L 12 SHEET 1 AA8 3 THR L 19 ILE L 20 0 SHEET 2 AA8 3 LEU L 74 ALA L 75 -1 O LEU L 74 N ILE L 20 SHEET 3 AA8 3 SER L 64 GLY L 65 -1 N SER L 64 O ALA L 75 SHEET 1 AA9 4 LYS L 46 ILE L 49 0 SHEET 2 AA9 4 ASN L 35 GLN L 39 -1 N TRP L 36 O LEU L 48 SHEET 3 AA9 4 ASP L 86 ASP L 93 -1 O ALA L 90 N ASN L 35 SHEET 4 AA9 4 ALA L 98 PHE L 101 -1 O ALA L 98 N ASP L 93 SHEET 1 AB1 4 LYS L 46 ILE L 49 0 SHEET 2 AB1 4 ASN L 35 GLN L 39 -1 N TRP L 36 O LEU L 48 SHEET 3 AB1 4 ASP L 86 ASP L 93 -1 O ALA L 90 N ASN L 35 SHEET 4 AB1 4 THR L 105 LYS L 106 -1 O THR L 105 N TYR L 87 SHEET 1 AB2 4 SER L 118 PHE L 122 0 SHEET 2 AB2 4 LYS L 133 PHE L 143 -1 O THR L 141 N SER L 118 SHEET 3 AB2 4 TYR L 176 THR L 185 -1 O LEU L 184 N ALA L 134 SHEET 4 AB2 4 MET L 163 THR L 165 -1 N GLU L 164 O TYR L 181 SHEET 1 AB3 4 SER L 118 PHE L 122 0 SHEET 2 AB3 4 LYS L 133 PHE L 143 -1 O THR L 141 N SER L 118 SHEET 3 AB3 4 TYR L 176 THR L 185 -1 O LEU L 184 N ALA L 134 SHEET 4 AB3 4 SER L 169 LYS L 170 -1 N SER L 169 O MET L 177 SHEET 1 AB4 3 THR L 149 ASP L 151 0 SHEET 2 AB4 3 GLN L 198 HIS L 201 -1 O GLN L 198 N ASP L 151 SHEET 3 AB4 3 HIS L 204 GLU L 207 -1 O VAL L 206 N VAL L 199 SHEET 1 AB5 2 LYS L 153 VAL L 154 0 SHEET 2 AB5 2 THR L 157 PRO L 158 -1 O THR L 157 N VAL L 154 SHEET 1 AB6 2 SER L 194 TYR L 195 0 SHEET 2 AB6 2 LEU L 210 SER L 211 -1 O LEU L 210 N TYR L 195 SSBOND 1 CYS L 22 CYS L 89 1555 1555 2.04 CISPEP 1 PHE H 152 PRO H 153 0 -5.50 CISPEP 2 GLU H 154 PRO H 155 0 5.22 CISPEP 3 TYR L 144 PRO L 145 0 2.45 SITE 1 AC1 13 HIS A 224 ALA A 227 MET A 231 VAL A 249 SITE 2 AC1 13 HIS A 252 VAL A 253 ARG A 263 THR A 266 SITE 3 AC1 13 PHE A 270 GLU L 82 SER L 172 ASN L 173 SITE 4 AC1 13 ASN L 174 CRYST1 166.514 39.705 103.515 90.00 125.74 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006006 0.000000 0.004322 0.00000 SCALE2 0.000000 0.025186 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011902 0.00000