HEADER TRANSCRIPTION 17-NOV-16 5MF7 TITLE NEW INSIGHTS INTO THE ROLE OF DNA SHAPE ON ITS RECOGNITION BY P53 TITLE 2 PROTEINS (COMPLEX P53DBD-GADD45) COMPND MOL_ID: 1; COMPND 2 MOLECULE: CELLULAR TUMOR ANTIGEN P53; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: P53 DNA BINDING DOMAIN; COMPND 5 SYNONYM: ANTIGEN NY-CO-13,PHOSPHOPROTEIN P53,TUMOR SUPPRESSOR P53; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: DNA; COMPND 9 CHAIN: C; COMPND 10 FRAGMENT: DNA; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: TP53, P53; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET27-B; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 13 ORGANISM_TAXID: 32630; SOURCE 14 OTHER_DETAILS: SYNTHESISED BY IDT KEYWDS TRANSCRIPTION, P53, TRANSCRIPTION FACTOR, DNA BINDING, DNA KEYWDS 2 RECOGNITION, HOOGSTEEN BASE-PAIRING, TRANSCRIPTION REGULATION, KEYWDS 3 APOPTOSIS, BIOLOGICAL RHYTHMS, CELL CYCLE, NUCLEUS, TUMOR KEYWDS 4 SUPPRESSOR, ANTIGEN NY-CO-13, PHOSPHOPROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR H.ROZENBERG,Y.DISKIN-POSNER,D.GOLOVENKO,Z.SHAKKED REVDAT 4 17-JAN-24 5MF7 1 REMARK REVDAT 3 02-JAN-19 5MF7 1 TITLE JRNL LINK REVDAT 2 27-JUN-18 5MF7 1 REMARK REVDAT 1 30-MAY-18 5MF7 0 JRNL AUTH D.GOLOVENKO,B.BRAUNING,P.VYAS,T.E.HARAN,H.ROZENBERG, JRNL AUTH 2 Z.SHAKKED JRNL TITL NEW INSIGHTS INTO THE ROLE OF DNA SHAPE ON ITS RECOGNITION JRNL TITL 2 BY P53 PROTEINS. JRNL REF STRUCTURE V. 26 1237 2018 JRNL REFN ISSN 1878-4186 JRNL PMID 30057026 JRNL DOI 10.1016/J.STR.2018.06.006 REMARK 2 REMARK 2 RESOLUTION. 1.59 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX DEV-2499_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.59 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.20 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 3 NUMBER OF REFLECTIONS : 60700 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.201 REMARK 3 R VALUE (WORKING SET) : 0.198 REMARK 3 FREE R VALUE : 0.233 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 6.930 REMARK 3 FREE R VALUE TEST SET COUNT : 4207 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 49.2227 - 4.9389 0.94 1888 132 0.1533 0.1414 REMARK 3 2 4.9389 - 3.9207 1.00 1960 143 0.1336 0.1514 REMARK 3 3 3.9207 - 3.4252 1.00 1933 144 0.1532 0.2064 REMARK 3 4 3.4252 - 3.1121 0.99 1923 145 0.1706 0.2054 REMARK 3 5 3.1121 - 2.8891 0.99 1906 145 0.1940 0.2402 REMARK 3 6 2.8891 - 2.7187 0.99 1929 145 0.2119 0.2870 REMARK 3 7 2.7187 - 2.5826 0.99 1897 144 0.1923 0.2758 REMARK 3 8 2.5826 - 2.4702 0.99 1886 138 0.1976 0.2295 REMARK 3 9 2.4702 - 2.3751 0.99 1891 139 0.1998 0.2142 REMARK 3 10 2.3751 - 2.2931 0.99 1925 142 0.2005 0.2605 REMARK 3 11 2.2931 - 2.2214 0.99 1884 140 0.1929 0.2036 REMARK 3 12 2.2214 - 2.1579 0.99 1864 137 0.2042 0.2517 REMARK 3 13 2.1579 - 2.1011 0.99 1904 130 0.2071 0.2250 REMARK 3 14 2.1011 - 2.0499 0.98 1890 150 0.2120 0.2857 REMARK 3 15 2.0499 - 2.0033 0.98 1868 140 0.2216 0.2519 REMARK 3 16 2.0033 - 1.9606 0.98 1885 146 0.2153 0.2560 REMARK 3 17 1.9606 - 1.9214 0.98 1854 134 0.2076 0.2597 REMARK 3 18 1.9214 - 1.8851 0.98 1873 149 0.2332 0.2384 REMARK 3 19 1.8851 - 1.8515 0.98 1864 136 0.2287 0.2909 REMARK 3 20 1.8515 - 1.8201 0.98 1859 142 0.2265 0.2858 REMARK 3 21 1.8201 - 1.7907 0.98 1880 117 0.2324 0.2717 REMARK 3 22 1.7907 - 1.7632 0.98 1889 168 0.2490 0.2624 REMARK 3 23 1.7632 - 1.7372 0.98 1865 128 0.2465 0.2798 REMARK 3 24 1.7372 - 1.7128 0.98 1824 140 0.2588 0.2717 REMARK 3 25 1.7128 - 1.6896 0.98 1895 144 0.2631 0.3185 REMARK 3 26 1.6896 - 1.6677 0.97 1839 141 0.2678 0.2986 REMARK 3 27 1.6677 - 1.6468 0.97 1857 138 0.2765 0.2659 REMARK 3 28 1.6468 - 1.6270 0.97 1847 130 0.2878 0.3634 REMARK 3 29 1.6270 - 1.6081 0.97 1851 134 0.3073 0.3295 REMARK 3 30 1.6081 - 1.5900 0.97 1863 146 0.3328 0.3446 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.190 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 38.080 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 14.56 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.23 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 4138 REMARK 3 ANGLE : 1.073 5820 REMARK 3 CHIRALITY : 0.066 639 REMARK 3 PLANARITY : 0.007 636 REMARK 3 DIHEDRAL : 18.833 2398 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 11 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 94 THROUGH 112 ) REMARK 3 ORIGIN FOR THE GROUP (A): 32.4731 0.1683 19.5125 REMARK 3 T TENSOR REMARK 3 T11: 0.0872 T22: 0.1460 REMARK 3 T33: 0.2896 T12: -0.0124 REMARK 3 T13: -0.0485 T23: 0.0222 REMARK 3 L TENSOR REMARK 3 L11: 0.0557 L22: 0.0004 REMARK 3 L33: 0.2304 L12: 0.0039 REMARK 3 L13: 0.0106 L23: 0.0056 REMARK 3 S TENSOR REMARK 3 S11: 0.0006 S12: -0.0348 S13: 0.0405 REMARK 3 S21: 0.0116 S22: 0.0005 S23: -0.0613 REMARK 3 S31: 0.0097 S32: -0.0602 S33: -0.0303 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 113 THROUGH 123 ) REMARK 3 ORIGIN FOR THE GROUP (A): 20.4165 9.7120 4.6586 REMARK 3 T TENSOR REMARK 3 T11: 0.2123 T22: 0.1807 REMARK 3 T33: 0.1881 T12: 0.0264 REMARK 3 T13: -0.0026 T23: 0.0335 REMARK 3 L TENSOR REMARK 3 L11: 0.0770 L22: 0.0105 REMARK 3 L33: 0.0215 L12: -0.0174 REMARK 3 L13: 0.0307 L23: -0.0106 REMARK 3 S TENSOR REMARK 3 S11: -0.0261 S12: 0.0035 S13: -0.0046 REMARK 3 S21: -0.0203 S22: -0.0396 S23: 0.0152 REMARK 3 S31: 0.0063 S32: -0.0001 S33: 0.0003 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 124 THROUGH 176 ) REMARK 3 ORIGIN FOR THE GROUP (A): 20.9051 1.9783 14.4411 REMARK 3 T TENSOR REMARK 3 T11: 0.0641 T22: 0.0538 REMARK 3 T33: 0.0599 T12: 0.0258 REMARK 3 T13: 0.0289 T23: -0.0003 REMARK 3 L TENSOR REMARK 3 L11: 0.1796 L22: 0.4969 REMARK 3 L33: 0.2955 L12: -0.1618 REMARK 3 L13: 0.0096 L23: -0.2380 REMARK 3 S TENSOR REMARK 3 S11: -0.0651 S12: -0.0219 S13: -0.0077 REMARK 3 S21: 0.0099 S22: -0.0101 S23: -0.1159 REMARK 3 S31: 0.0541 S32: 0.0116 S33: -0.6863 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 177 THROUGH 194 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.5213 -7.9594 12.4260 REMARK 3 T TENSOR REMARK 3 T11: 0.0729 T22: 0.1287 REMARK 3 T33: 0.2142 T12: -0.0326 REMARK 3 T13: 0.0218 T23: -0.0533 REMARK 3 L TENSOR REMARK 3 L11: 0.0260 L22: 0.0285 REMARK 3 L33: 0.0810 L12: -0.0242 REMARK 3 L13: 0.0365 L23: -0.0208 REMARK 3 S TENSOR REMARK 3 S11: 0.0095 S12: -0.0092 S13: -0.0498 REMARK 3 S21: 0.0033 S22: 0.0119 S23: -0.0494 REMARK 3 S31: 0.0469 S32: -0.0704 S33: 0.0024 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 195 THROUGH 293 ) REMARK 3 ORIGIN FOR THE GROUP (A): 20.2313 0.2875 13.0430 REMARK 3 T TENSOR REMARK 3 T11: 0.0794 T22: 0.0533 REMARK 3 T33: 0.1119 T12: 0.0112 REMARK 3 T13: -0.0131 T23: -0.0376 REMARK 3 L TENSOR REMARK 3 L11: 0.1811 L22: 0.3809 REMARK 3 L33: 0.2715 L12: -0.1271 REMARK 3 L13: 0.0381 L23: -0.0406 REMARK 3 S TENSOR REMARK 3 S11: -0.0342 S12: -0.0034 S13: 0.1127 REMARK 3 S21: -0.0235 S22: -0.0447 S23: -0.0187 REMARK 3 S31: 0.0437 S32: -0.0520 S33: -0.3431 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 94 THROUGH 112 ) REMARK 3 ORIGIN FOR THE GROUP (A): 30.9818 0.1729 53.0853 REMARK 3 T TENSOR REMARK 3 T11: 0.1282 T22: 0.1044 REMARK 3 T33: 0.2332 T12: 0.0251 REMARK 3 T13: -0.0073 T23: 0.0670 REMARK 3 L TENSOR REMARK 3 L11: 0.0185 L22: 0.0004 REMARK 3 L33: 0.1557 L12: 0.0025 REMARK 3 L13: -0.0537 L23: -0.0073 REMARK 3 S TENSOR REMARK 3 S11: -0.0410 S12: -0.0084 S13: 0.0597 REMARK 3 S21: 0.1135 S22: 0.0575 S23: -0.1103 REMARK 3 S31: 0.0159 S32: -0.0087 S33: -0.0605 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 113 THROUGH 123 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.9383 9.7098 38.2356 REMARK 3 T TENSOR REMARK 3 T11: 0.2054 T22: 0.1919 REMARK 3 T33: 0.1810 T12: 0.0268 REMARK 3 T13: 0.0069 T23: 0.0296 REMARK 3 L TENSOR REMARK 3 L11: 0.0319 L22: 0.0031 REMARK 3 L33: 0.0083 L12: -0.0086 REMARK 3 L13: 0.0094 L23: -0.0040 REMARK 3 S TENSOR REMARK 3 S11: -0.0235 S12: 0.0034 S13: -0.0049 REMARK 3 S21: -0.0183 S22: -0.0377 S23: 0.0119 REMARK 3 S31: 0.0060 S32: -0.0003 S33: 0.0000 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 124 THROUGH 176 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.4520 2.0120 47.8832 REMARK 3 T TENSOR REMARK 3 T11: 0.0657 T22: 0.0991 REMARK 3 T33: 0.1379 T12: -0.0151 REMARK 3 T13: -0.0468 T23: 0.0222 REMARK 3 L TENSOR REMARK 3 L11: 0.2574 L22: 0.1151 REMARK 3 L33: 0.2482 L12: 0.0014 REMARK 3 L13: 0.0060 L23: -0.1510 REMARK 3 S TENSOR REMARK 3 S11: -0.0666 S12: -0.0066 S13: 0.1056 REMARK 3 S21: 0.0448 S22: -0.0451 S23: -0.1515 REMARK 3 S31: -0.0631 S32: 0.0083 S33: -0.5933 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 177 THROUGH 194 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.0394 -7.9633 46.0001 REMARK 3 T TENSOR REMARK 3 T11: 0.1740 T22: 0.1152 REMARK 3 T33: 0.0923 T12: 0.0165 REMARK 3 T13: 0.0295 T23: 0.0081 REMARK 3 L TENSOR REMARK 3 L11: 0.0075 L22: 0.0090 REMARK 3 L33: 0.0013 L12: 0.0080 REMARK 3 L13: 0.0014 L23: 0.0008 REMARK 3 S TENSOR REMARK 3 S11: 0.0178 S12: 0.0006 S13: -0.0902 REMARK 3 S21: 0.0141 S22: 0.0092 S23: -0.0511 REMARK 3 S31: 0.0295 S32: -0.1036 S33: 0.0003 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 195 THROUGH 277 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.8164 -3.4736 46.1986 REMARK 3 T TENSOR REMARK 3 T11: 0.0717 T22: 0.1289 REMARK 3 T33: 0.0673 T12: 0.0329 REMARK 3 T13: 0.0180 T23: 0.0514 REMARK 3 L TENSOR REMARK 3 L11: 0.0183 L22: 0.1795 REMARK 3 L33: 0.3005 L12: -0.0481 REMARK 3 L13: 0.0472 L23: -0.0278 REMARK 3 S TENSOR REMARK 3 S11: -0.0134 S12: 0.0544 S13: 0.0232 REMARK 3 S21: 0.0176 S22: -0.0626 S23: -0.0895 REMARK 3 S31: 0.0061 S32: 0.0501 S33: -0.4967 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 278 THROUGH 293 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.8687 20.3283 49.0662 REMARK 3 T TENSOR REMARK 3 T11: 0.1758 T22: 0.1062 REMARK 3 T33: 0.2772 T12: -0.0203 REMARK 3 T13: -0.0381 T23: 0.0555 REMARK 3 L TENSOR REMARK 3 L11: 0.0101 L22: 0.0068 REMARK 3 L33: 0.0283 L12: -0.0080 REMARK 3 L13: -0.0158 L23: 0.0134 REMARK 3 S TENSOR REMARK 3 S11: 0.0673 S12: 0.0015 S13: 0.0414 REMARK 3 S21: -0.0131 S22: 0.0016 S23: -0.0135 REMARK 3 S31: -0.0281 S32: 0.0009 S33: 0.0426 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: TRANSLATIONAL NON-CRYSTALLOGRAPHIC REMARK 3 SYMMETRY (TNCS) CORRECTION REMARK 4 REMARK 4 5MF7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 18-NOV-16. REMARK 100 THE DEPOSITION ID IS D_1200002396. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-MAR-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.87260 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 75213 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.480 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 200 DATA REDUNDANCY : 8.000 REMARK 200 R MERGE (I) : 0.10200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 5.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.48 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.51 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.1 REMARK 200 DATA REDUNDANCY IN SHELL : 6.50 REMARK 200 R MERGE FOR SHELL (I) : 1.53300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.7.3 REMARK 200 STARTING MODEL: PDBID 2AC0 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.39 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.25 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 4% TACSIMATE, 12% W/V POLYETHYLENE REMARK 280 GLYCOL 3,350, PH 8.0, EVAPORATION, TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 69.02800 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 25.01700 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 69.02800 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 25.01700 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -2.95475 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 67.13701 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A 115 REMARK 465 SER A 116 REMARK 465 GLY A 117 REMARK 465 THR A 118 REMARK 465 ALA A 119 REMARK 465 LYS A 120 REMARK 465 SER A 121 REMARK 465 SER A 183 REMARK 465 ASP A 184 REMARK 465 SER A 185 REMARK 465 ASP A 186 REMARK 465 GLY A 187 REMARK 465 HIS B 115 REMARK 465 SER B 116 REMARK 465 GLY B 117 REMARK 465 THR B 118 REMARK 465 ALA B 119 REMARK 465 LYS B 120 REMARK 465 SER B 121 REMARK 465 SER B 183 REMARK 465 ASP B 184 REMARK 465 SER B 185 REMARK 465 ASP B 186 REMARK 465 GLY B 187 REMARK 465 DT C 0 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU A 114 CG CD1 CD2 REMARK 470 VAL A 122 CG1 CG2 REMARK 470 LEU A 188 CG CD1 CD2 REMARK 470 GLU A 204 CD OE1 OE2 REMARK 470 GLU A 221 CG CD OE1 OE2 REMARK 470 VAL A 225 CG1 CG2 REMARK 470 ASP A 228 CG OD1 OD2 REMARK 470 GLU A 287 CD OE1 OE2 REMARK 470 ARG A 290 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 291 CG CD CE NZ REMARK 470 LYS A 292 CG CD CE NZ REMARK 470 LEU B 114 CG CD1 CD2 REMARK 470 VAL B 122 CG1 CG2 REMARK 470 LEU B 188 CG CD1 CD2 REMARK 470 GLU B 204 CD OE1 OE2 REMARK 470 GLU B 221 CG CD OE1 OE2 REMARK 470 VAL B 225 CG1 CG2 REMARK 470 ASP B 228 CG OD1 OD2 REMARK 470 GLU B 287 CD OE1 OE2 REMARK 470 ARG B 290 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 291 CG CD CE NZ REMARK 470 LYS B 292 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU B 198 O HOH B 401 2.13 REMARK 500 O HOH C 206 O HOH C 218 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH C 204 O HOH C 213 2556 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DC C 1 C1' DC C 1 N1 0.141 REMARK 500 DC C 1 O3' DA C 2 P -0.130 REMARK 500 DA C 11 O3' DA C 11 C3' -0.037 REMARK 500 DA C 11 O3' DA C 11 C3' -0.038 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS B 124 119.41 -162.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 176 SG REMARK 620 2 HIS A 179 ND1 102.3 REMARK 620 3 CYS A 238 SG 109.8 114.1 REMARK 620 4 CYS A 242 SG 113.9 103.9 112.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 176 SG REMARK 620 2 HIS B 179 ND1 101.5 REMARK 620 3 CYS B 238 SG 110.0 115.3 REMARK 620 4 CYS B 242 SG 113.1 103.9 112.5 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG C 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-nucleotide DG C 1 and DG C REMARK 800 20 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-nucleotide DG C 1 and DG C REMARK 800 20 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3KZ8 RELATED DB: PDB REMARK 900 RELATED ID: 5MCT RELATED DB: PDB REMARK 900 RELATED ID: 5MCU RELATED DB: PDB REMARK 900 RELATED ID: 5MCV RELATED DB: PDB REMARK 900 RELATED ID: 5MCW RELATED DB: PDB REMARK 900 RELATED ID: 5MG7 RELATED DB: PDB REMARK 900 RELATED ID: 6FJ5 RELATED DB: PDB DBREF 5MF7 A 94 293 UNP P04637 P53_HUMAN 55 254 DBREF 5MF7 B 94 293 UNP P04637 P53_HUMAN 55 254 DBREF 5MF7 C 0 20 PDB 5MF7 5MF7 0 20 SEQRES 1 A 200 SER SER SER VAL PRO SER GLN LYS THR TYR GLN GLY SER SEQRES 2 A 200 TYR GLY PHE ARG LEU GLY PHE LEU HIS SER GLY THR ALA SEQRES 3 A 200 LYS SER VAL THR CYS THR TYR SER PRO ALA LEU ASN LYS SEQRES 4 A 200 MET PHE CYS GLN LEU ALA LYS THR CYS PRO VAL GLN LEU SEQRES 5 A 200 TRP VAL ASP SER THR PRO PRO PRO GLY THR ARG VAL ARG SEQRES 6 A 200 ALA MET ALA ILE TYR LYS GLN SER GLN HIS MET THR GLU SEQRES 7 A 200 VAL VAL ARG ARG CYS PRO HIS HIS GLU ARG CYS SER ASP SEQRES 8 A 200 SER ASP GLY LEU ALA PRO PRO GLN HIS LEU ILE ARG VAL SEQRES 9 A 200 GLU GLY ASN LEU ARG VAL GLU TYR LEU ASP ASP ARG ASN SEQRES 10 A 200 THR PHE ARG HIS SER VAL VAL VAL PRO TYR GLU PRO PRO SEQRES 11 A 200 GLU VAL GLY SER ASP CYS THR THR ILE HIS TYR ASN TYR SEQRES 12 A 200 MET CYS ASN SER SER CYS MET GLY GLY MET ASN ARG ARG SEQRES 13 A 200 PRO ILE LEU THR ILE ILE THR LEU GLU ASP SER SER GLY SEQRES 14 A 200 ASN LEU LEU GLY ARG ASN SER PHE GLU VAL ARG VAL CYS SEQRES 15 A 200 ALA CYS PRO GLY ARG ASP ARG ARG THR GLU GLU GLU ASN SEQRES 16 A 200 LEU ARG LYS LYS GLY SEQRES 1 B 200 SER SER SER VAL PRO SER GLN LYS THR TYR GLN GLY SER SEQRES 2 B 200 TYR GLY PHE ARG LEU GLY PHE LEU HIS SER GLY THR ALA SEQRES 3 B 200 LYS SER VAL THR CYS THR TYR SER PRO ALA LEU ASN LYS SEQRES 4 B 200 MET PHE CYS GLN LEU ALA LYS THR CYS PRO VAL GLN LEU SEQRES 5 B 200 TRP VAL ASP SER THR PRO PRO PRO GLY THR ARG VAL ARG SEQRES 6 B 200 ALA MET ALA ILE TYR LYS GLN SER GLN HIS MET THR GLU SEQRES 7 B 200 VAL VAL ARG ARG CYS PRO HIS HIS GLU ARG CYS SER ASP SEQRES 8 B 200 SER ASP GLY LEU ALA PRO PRO GLN HIS LEU ILE ARG VAL SEQRES 9 B 200 GLU GLY ASN LEU ARG VAL GLU TYR LEU ASP ASP ARG ASN SEQRES 10 B 200 THR PHE ARG HIS SER VAL VAL VAL PRO TYR GLU PRO PRO SEQRES 11 B 200 GLU VAL GLY SER ASP CYS THR THR ILE HIS TYR ASN TYR SEQRES 12 B 200 MET CYS ASN SER SER CYS MET GLY GLY MET ASN ARG ARG SEQRES 13 B 200 PRO ILE LEU THR ILE ILE THR LEU GLU ASP SER SER GLY SEQRES 14 B 200 ASN LEU LEU GLY ARG ASN SER PHE GLU VAL ARG VAL CYS SEQRES 15 B 200 ALA CYS PRO GLY ARG ASP ARG ARG THR GLU GLU GLU ASN SEQRES 16 B 200 LEU ARG LYS LYS GLY SEQRES 1 C 21 DT DG DA DA DC DA DT DG DT DC DT DA DA SEQRES 2 C 21 DG DC DA DT DG DC DT DG HET ZN A 301 1 HET ZN B 301 1 HET PEG C 101 7 HETNAM ZN ZINC ION HETNAM PEG DI(HYDROXYETHYL)ETHER FORMUL 4 ZN 2(ZN 2+) FORMUL 6 PEG C4 H10 O3 FORMUL 7 HOH *462(H2 O) HELIX 1 AA1 CYS A 176 CYS A 182 1 7 HELIX 2 AA2 CYS A 277 GLY A 293 1 17 HELIX 3 AA3 CYS B 176 CYS B 182 1 7 HELIX 4 AA4 CYS B 277 GLY B 293 1 17 SHEET 1 AA1 4 ARG A 110 GLY A 112 0 SHEET 2 AA1 4 CYS A 141 TRP A 146 -1 O GLN A 144 N GLY A 112 SHEET 3 AA1 4 THR A 230 TYR A 236 -1 O TYR A 234 N CYS A 141 SHEET 4 AA1 4 ILE A 195 GLU A 198 -1 N GLU A 198 O HIS A 233 SHEET 1 AA2 7 CYS A 124 SER A 127 0 SHEET 2 AA2 7 LYS A 132 CYS A 135 -1 O LYS A 132 N SER A 127 SHEET 3 AA2 7 LEU A 264 VAL A 274 1 O GLU A 271 N MET A 133 SHEET 4 AA2 7 ILE A 251 GLU A 258 -1 N THR A 253 O PHE A 270 SHEET 5 AA2 7 ARG A 156 TYR A 163 -1 N MET A 160 O ILE A 254 SHEET 6 AA2 7 HIS A 214 PRO A 219 -1 O VAL A 218 N VAL A 157 SHEET 7 AA2 7 GLU A 204 ASP A 207 -1 N GLU A 204 O VAL A 217 SHEET 1 AA3 4 ARG B 110 GLY B 112 0 SHEET 2 AA3 4 CYS B 141 TRP B 146 -1 O GLN B 144 N GLY B 112 SHEET 3 AA3 4 THR B 230 TYR B 236 -1 O TYR B 234 N CYS B 141 SHEET 4 AA3 4 ILE B 195 GLU B 198 -1 N GLU B 198 O HIS B 233 SHEET 1 AA4 7 CYS B 124 SER B 127 0 SHEET 2 AA4 7 LYS B 132 CYS B 135 -1 O LYS B 132 N SER B 127 SHEET 3 AA4 7 LEU B 264 VAL B 274 1 O GLU B 271 N MET B 133 SHEET 4 AA4 7 ILE B 251 GLU B 258 -1 N ILE B 255 O ASN B 268 SHEET 5 AA4 7 ARG B 156 TYR B 163 -1 N ARG B 156 O GLU B 258 SHEET 6 AA4 7 HIS B 214 PRO B 219 -1 O VAL B 218 N VAL B 157 SHEET 7 AA4 7 GLU B 204 ASP B 207 -1 N LEU B 206 O SER B 215 LINK SG CYS A 176 ZN ZN A 301 1555 1555 2.20 LINK ND1 HIS A 179 ZN ZN A 301 1555 1555 2.06 LINK SG CYS A 238 ZN ZN A 301 1555 1555 2.32 LINK SG CYS A 242 ZN ZN A 301 1555 1555 2.35 LINK SG CYS B 176 ZN ZN B 301 1555 1555 2.38 LINK ND1 HIS B 179 ZN ZN B 301 1555 1555 2.01 LINK SG CYS B 238 ZN ZN B 301 1555 1555 2.32 LINK SG CYS B 242 ZN ZN B 301 1555 1555 2.37 SITE 1 AC1 4 CYS A 176 HIS A 179 CYS A 238 CYS A 242 SITE 1 AC2 4 CYS B 176 HIS B 179 CYS B 238 CYS B 242 SITE 1 AC3 12 DA C 5 DT C 6 DG C 7 DA C 15 SITE 2 AC3 12 DT C 16 DG C 17 HOH C 201 HOH C 204 SITE 3 AC3 12 HOH C 205 HOH C 206 HOH C 213 HOH C 218 SITE 1 AC4 2 DA C 2 DT C 19 SITE 1 AC5 2 DA C 2 DT C 19 CRYST1 138.056 50.034 67.202 90.00 92.52 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007243 0.000000 0.000319 0.00000 SCALE2 0.000000 0.019986 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014895 0.00000