HEADER HYDROLASE 18-NOV-16 5MFU TITLE PA3825-EAL MN-PGPG STRUCTURE COMPND MOL_ID: 1; COMPND 2 MOLECULE: DIGUANYLATE PHOSPHODIESTERASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA; SOURCE 3 ORGANISM_TAXID: 287; SOURCE 4 GENE: AO964_02925; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_VARIANT: LEMO21 KEYWDS EAL, PHOSPHODIESTERASE, BIOFILM FORMATION, P AERUGINOSA, PA3825, KEYWDS 2 HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR S.HORRELL,D.BELLINI,R.STRANGE,A.WAGNER,M.WALSH REVDAT 4 17-JAN-24 5MFU 1 LINK REVDAT 3 16-OCT-19 5MFU 1 REMARK REVDAT 2 03-JUL-19 5MFU 1 SOURCE REVDAT 1 01-MAR-17 5MFU 0 JRNL AUTH D.BELLINI,S.HORRELL,A.HUTCHIN,C.W.PHIPPEN,R.W.STRANGE,Y.CAI, JRNL AUTH 2 A.WAGNER,J.S.WEBB,I.TEWS,M.A.WALSH JRNL TITL DIMERISATION INDUCED FORMATION OF THE ACTIVE SITE AND THE JRNL TITL 2 IDENTIFICATION OF THREE METAL SITES IN JRNL TITL 3 EAL-PHOSPHODIESTERASES. JRNL REF SCI REP V. 7 42166 2017 JRNL REFN ESSN 2045-2322 JRNL PMID 28186120 JRNL DOI 10.1038/SREP42166 REMARK 2 REMARK 2 RESOLUTION. 2.15 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0155 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.15 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 26.66 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 3 NUMBER OF REFLECTIONS : 15439 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.205 REMARK 3 R VALUE (WORKING SET) : 0.202 REMARK 3 FREE R VALUE : 0.261 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 808 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.15 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.21 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1114 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.24 REMARK 3 BIN R VALUE (WORKING SET) : 0.2690 REMARK 3 BIN FREE R VALUE SET COUNT : 55 REMARK 3 BIN FREE R VALUE : 0.3210 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1986 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 49 REMARK 3 SOLVENT ATOMS : 118 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.45 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.29000 REMARK 3 B22 (A**2) : 1.29000 REMARK 3 B33 (A**2) : -2.58000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.257 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.217 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.172 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.728 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.944 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.913 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2142 ; 0.016 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2038 ; 0.006 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2924 ; 1.713 ; 1.964 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4692 ; 1.034 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 265 ; 6.365 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 97 ;35.735 ;22.887 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 357 ;13.728 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 21 ;17.012 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 326 ; 0.103 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2411 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 488 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1045 ; 3.358 ; 3.360 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1044 ; 3.360 ; 3.357 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1315 ; 5.387 ; 5.020 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 5MFU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 21-NOV-16. REMARK 100 THE DEPOSITION ID IS D_1200002410. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-AUG-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I02 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.8785 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16288 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.150 REMARK 200 RESOLUTION RANGE LOW (A) : 27.160 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 4Y9M REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.26 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.52 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 6-11% ISOPROPANOL, 0.1 M MES PH 6.5, REMARK 280 0.1 M SODIUM ACETATE PH 4.5 AND 0.2 M MNCL2, PH 5.2, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 67.89350 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 32.39000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 32.39000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 101.84025 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 32.39000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 32.39000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 33.94675 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 32.39000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 32.39000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 101.84025 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 32.39000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 32.39000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 33.94675 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 67.89350 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 170 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12270 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -14.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O3' G A 503 P G A 504 1.58 REMARK 500 OE2 GLU A 258 O HOH A 601 1.92 REMARK 500 NH1 ARG A 243 O HOH A 602 1.98 REMARK 500 O HOH A 663 O HOH A 703 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NH1 ARG A 145 OE2 GLU A 248 3554 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 57 -23.92 -140.55 REMARK 500 ILE A 192 -61.97 -143.43 REMARK 500 THR A 194 -53.69 60.73 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 G A 504 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 501 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 39 OE2 REMARK 620 2 ASN A 98 OD1 87.9 REMARK 620 3 GLU A 130 OE1 86.9 82.0 REMARK 620 4 ASP A 160 OD2 168.1 81.8 85.7 REMARK 620 5 G A 503 OP1 85.5 110.3 165.3 103.6 REMARK 620 6 HOH A 626 O 88.8 168.6 86.9 100.1 80.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 502 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 160 OD2 REMARK 620 2 G A 503 OP2 88.3 REMARK 620 3 G A 504 O2' 103.2 74.2 REMARK 620 4 HOH A 609 O 61.7 146.8 97.9 REMARK 620 5 HOH A 666 O 132.4 129.0 68.0 73.0 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue G A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue G A 504 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4Y9O RELATED DB: PDB REMARK 900 RELATED ID: 4Y9M RELATED DB: PDB REMARK 900 RELATED ID: 4Y9N RELATED DB: PDB REMARK 900 RELATED ID: 4Y9P RELATED DB: PDB REMARK 900 RELATED ID: 4Y9Q RELATED DB: PDB REMARK 900 RELATED ID: 4Y8E RELATED DB: PDB REMARK 900 RELATED ID: 5MF5 RELATED DB: PDB REMARK 900 RELATED ID: 5M1T RELATED DB: PDB DBREF1 5MFU A 5 258 UNP A0A140SMD7_PSEAI DBREF2 5MFU A A0A140SMD7 259 512 SEQRES 1 A 254 ALA SER PRO SER SER GLU LEU ARG ARG ALA LEU GLU ALA SEQRES 2 A 254 ASN GLU PHE ILE PRO TYR TYR GLN PRO LEU SER PRO GLY SEQRES 3 A 254 GLN GLY GLY ARG TRP ILE GLY VAL GLU VAL LEU MET ARG SEQRES 4 A 254 TRP ARG HIS PRO ARG GLU GLY LEU ILE ARG PRO ASP LEU SEQRES 5 A 254 PHE ILE PRO PHE ALA GLU ARG SER GLY LEU ILE VAL PRO SEQRES 6 A 254 MET THR ARG ALA LEU MET ARG GLN VAL ALA GLU ASP LEU SEQRES 7 A 254 GLY GLY HIS ALA GLY LYS LEU GLU PRO GLY PHE HIS ILE SEQRES 8 A 254 GLY PHE ASN ILE SER ALA THR HIS CYS HIS GLU LEU ALA SEQRES 9 A 254 LEU VAL ASP ASP CYS ARG GLU LEU LEU ALA ALA PHE PRO SEQRES 10 A 254 PRO GLY HIS ILE THR LEU VAL LEU GLU LEU THR GLU ARG SEQRES 11 A 254 GLU LEU ILE GLU SER SER GLU VAL THR ASP ARG LEU PHE SEQRES 12 A 254 ASP GLU LEU HIS ALA LEU GLY VAL LYS ILE ALA ILE ASP SEQRES 13 A 254 ASP PHE GLY THR GLY HIS SER SER LEU ALA TYR LEU ARG SEQRES 14 A 254 LYS PHE GLN VAL ASP CYS LEU LYS ILE ASP GLN SER PHE SEQRES 15 A 254 VAL ALA ARG ILE GLY ILE ASP THR LEU SER GLY HIS ILE SEQRES 16 A 254 LEU ASP SER ILE VAL GLU LEU SER ALA LYS LEU ASP LEU SEQRES 17 A 254 ASP ILE VAL ALA GLU GLY VAL GLU THR PRO GLU GLN ARG SEQRES 18 A 254 ASP TYR LEU ALA ALA ARG GLY VAL ASP TYR LEU GLN GLY SEQRES 19 A 254 TYR LEU ILE GLY ARG PRO MET PRO LEU GLU SER LEU LEU SEQRES 20 A 254 SER SER LEU THR VAL GLN GLU HET MN A 501 1 HET NA A 502 1 HET G A 503 24 HET G A 504 23 HETNAM MN MANGANESE (II) ION HETNAM NA SODIUM ION HETNAM G GUANOSINE-5'-MONOPHOSPHATE FORMUL 2 MN MN 2+ FORMUL 3 NA NA 1+ FORMUL 4 G 2(C10 H14 N5 O8 P) FORMUL 6 HOH *118(H2 O) HELIX 1 AA1 SER A 6 ALA A 17 1 12 HELIX 2 AA2 ARG A 53 LEU A 56 5 4 HELIX 3 AA3 PHE A 57 SER A 64 1 8 HELIX 4 AA4 LEU A 66 GLY A 83 1 18 HELIX 5 AA5 HIS A 85 LEU A 89 5 5 HELIX 6 AA6 ALA A 101 GLU A 106 5 6 HELIX 7 AA7 LEU A 107 ALA A 118 1 12 HELIX 8 AA8 SER A 140 GLY A 154 1 15 HELIX 9 AA9 SER A 168 PHE A 175 1 8 HELIX 10 AB1 ASP A 183 ARG A 189 1 7 HELIX 11 AB2 THR A 194 ASP A 211 1 18 HELIX 12 AB3 THR A 221 ALA A 230 1 10 HELIX 13 AB4 PRO A 246 GLU A 258 1 13 SHEET 1 AA110 GLY A 50 ILE A 52 0 SHEET 2 AA110 GLY A 37 HIS A 46 -1 N TRP A 44 O ILE A 52 SHEET 3 AA110 PHE A 93 ASN A 98 1 O GLY A 96 N VAL A 40 SHEET 4 AA110 ILE A 125 THR A 132 1 O GLU A 130 N PHE A 97 SHEET 5 AA110 LYS A 156 PHE A 162 1 O LYS A 156 N LEU A 129 SHEET 6 AA110 CYS A 179 ILE A 182 1 O LYS A 181 N PHE A 162 SHEET 7 AA110 ASP A 213 GLU A 217 1 O VAL A 215 N ILE A 182 SHEET 8 AA110 TYR A 235 GLN A 237 1 O TYR A 235 N ALA A 216 SHEET 9 AA110 PHE A 20 PRO A 29 -1 N SER A 28 O LEU A 236 SHEET 10 AA110 GLY A 37 HIS A 46 -1 O LEU A 41 N TYR A 23 LINK OE2 GLU A 39 MN MN A 501 1555 1555 2.20 LINK OD1 ASN A 98 MN MN A 501 1555 1555 2.46 LINK OE1 GLU A 130 MN MN A 501 1555 1555 2.11 LINK OD2 ASP A 160 MN MN A 501 1555 1555 2.21 LINK OD2 ASP A 160 NA NA A 502 1555 1555 2.68 LINK MN MN A 501 OP1 G A 503 1555 1555 2.25 LINK MN MN A 501 O HOH A 626 1555 1555 2.75 LINK NA NA A 502 OP2 G A 503 1555 1555 2.51 LINK NA NA A 502 O2' G A 504 1555 1555 2.72 LINK NA NA A 502 O HOH A 609 1555 1555 2.83 LINK NA NA A 502 O HOH A 666 1555 1555 2.37 SITE 1 AC1 7 GLU A 39 ASN A 98 GLU A 130 ASP A 160 SITE 2 AC1 7 G A 503 G A 504 HOH A 626 SITE 1 AC2 6 ASP A 160 ASP A 161 G A 503 G A 504 SITE 2 AC2 6 HOH A 609 HOH A 666 SITE 1 AC3 19 GLN A 25 GLU A 39 ARG A 53 ASP A 160 SITE 2 AC3 19 ASP A 161 GLN A 184 GLU A 217 GLY A 218 SITE 3 AC3 19 GLU A 220 GLY A 238 TYR A 239 PRO A 244 SITE 4 AC3 19 MN A 501 NA A 502 G A 504 HOH A 605 SITE 5 AC3 19 HOH A 620 HOH A 626 HOH A 677 SITE 1 AC4 17 LEU A 41 MET A 42 ARG A 43 ARG A 53 SITE 2 AC4 17 PRO A 54 ASP A 55 LEU A 74 ASN A 98 SITE 3 AC4 17 MN A 501 NA A 502 G A 503 HOH A 603 SITE 4 AC4 17 HOH A 610 HOH A 619 HOH A 621 HOH A 666 SITE 5 AC4 17 HOH A 689 CRYST1 64.780 64.780 135.787 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015437 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015437 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007364 0.00000