HEADER HYDROLASE 18-NOV-16 5MFX TITLE ZIKA NS3 HELICASE:RNA COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: GENOME POLYPROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 1685-2125; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: RNA (5'-R(P*AP*GP*AP*CP*U)-3'); COMPND 8 CHAIN: B; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ZIKA VIRUS (STRAIN MR 766); SOURCE 3 ORGANISM_COMMON: ZIKV; SOURCE 4 ORGANISM_TAXID: 64320; SOURCE 5 STRAIN: MR 766; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: ZIKA VIRUS; SOURCE 11 ORGANISM_TAXID: 64320 KEYWDS HELICASE, RNA, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR H.T.JENKINS,M.GE,M.CHECHIK,S.J.GREIVE,A.A.ANTSON REVDAT 2 17-JAN-24 5MFX 1 REMARK REVDAT 1 11-JAN-17 5MFX 0 JRNL AUTH H.T.JENKINS,M.GE,M.CHECHIK,S.J.GREIVE,A.A.ANTSON JRNL TITL HOW ZIKA VIRUS NS3 HELICASE GRIPS THE FIRST NUCLEOTIDE OF JRNL TITL 2 THE LEADING RNA STRAND JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0155 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.69 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 3 NUMBER OF REFLECTIONS : 54856 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.163 REMARK 3 R VALUE (WORKING SET) : 0.162 REMARK 3 FREE R VALUE : 0.191 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2878 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.64 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3969 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.12 REMARK 3 BIN R VALUE (WORKING SET) : 0.2990 REMARK 3 BIN FREE R VALUE SET COUNT : 190 REMARK 3 BIN FREE R VALUE : 0.3000 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3333 REMARK 3 NUCLEIC ACID ATOMS : 92 REMARK 3 HETEROGEN ATOMS : 17 REMARK 3 SOLVENT ATOMS : 387 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 31.27 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.39 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.08000 REMARK 3 B22 (A**2) : -0.30000 REMARK 3 B33 (A**2) : 0.24000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.26000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.083 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.083 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.063 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.768 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.973 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.964 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3553 ; 0.012 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3265 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4858 ; 1.545 ; 1.926 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7486 ; 0.978 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 440 ; 5.849 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 148 ;33.403 ;22.635 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 549 ;11.787 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 32 ;12.545 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 546 ; 0.095 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3983 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 822 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1750 ; 1.662 ; 2.220 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1748 ; 1.637 ; 2.217 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2188 ; 2.573 ; 3.321 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 183 A 327 REMARK 3 ORIGIN FOR THE GROUP (A): -1.4246 13.0400 -17.8551 REMARK 3 T TENSOR REMARK 3 T11: 0.0126 T22: 0.0080 REMARK 3 T33: 0.0400 T12: -0.0077 REMARK 3 T13: -0.0054 T23: 0.0008 REMARK 3 L TENSOR REMARK 3 L11: 0.2483 L22: 0.4796 REMARK 3 L33: 0.3139 L12: 0.0223 REMARK 3 L13: 0.0741 L23: -0.1151 REMARK 3 S TENSOR REMARK 3 S11: -0.0054 S12: 0.0009 S13: 0.0076 REMARK 3 S21: 0.0363 S22: -0.0327 S23: -0.0390 REMARK 3 S31: -0.0515 S32: 0.0139 S33: 0.0381 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 328 A 480 REMARK 3 ORIGIN FOR THE GROUP (A): -16.7174 -8.1460 -9.0765 REMARK 3 T TENSOR REMARK 3 T11: 0.0221 T22: 0.0111 REMARK 3 T33: 0.0231 T12: -0.0105 REMARK 3 T13: 0.0042 T23: 0.0061 REMARK 3 L TENSOR REMARK 3 L11: 0.1060 L22: 0.5172 REMARK 3 L33: 0.3172 L12: 0.1129 REMARK 3 L13: 0.0189 L23: 0.1547 REMARK 3 S TENSOR REMARK 3 S11: 0.0203 S12: -0.0224 S13: -0.0265 REMARK 3 S21: 0.0613 S22: -0.0464 S23: 0.0251 REMARK 3 S31: 0.0027 S32: -0.0160 S33: 0.0260 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 481 A 616 REMARK 3 ORIGIN FOR THE GROUP (A): -19.3310 4.1605 -37.1610 REMARK 3 T TENSOR REMARK 3 T11: 0.0074 T22: 0.0128 REMARK 3 T33: 0.0383 T12: -0.0007 REMARK 3 T13: 0.0027 T23: -0.0066 REMARK 3 L TENSOR REMARK 3 L11: 1.0758 L22: 0.1369 REMARK 3 L33: 0.2610 L12: -0.1006 REMARK 3 L13: 0.2447 L23: -0.1170 REMARK 3 S TENSOR REMARK 3 S11: 0.0177 S12: 0.0142 S13: 0.0112 REMARK 3 S21: 0.0153 S22: -0.0027 S23: -0.0075 REMARK 3 S31: 0.0046 S32: -0.0213 S33: -0.0150 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 5 REMARK 3 ORIGIN FOR THE GROUP (A): -17.9170 4.0949 -22.0672 REMARK 3 T TENSOR REMARK 3 T11: 0.0228 T22: 0.0253 REMARK 3 T33: 0.0453 T12: -0.0202 REMARK 3 T13: -0.0083 T23: 0.0004 REMARK 3 L TENSOR REMARK 3 L11: 1.3508 L22: 6.8579 REMARK 3 L33: 1.1477 L12: 3.0292 REMARK 3 L13: -0.7708 L23: -1.5544 REMARK 3 S TENSOR REMARK 3 S11: -0.0529 S12: 0.1241 S13: 0.0659 REMARK 3 S21: -0.0859 S22: 0.2617 S23: 0.1111 REMARK 3 S31: 0.0728 S32: -0.0639 S33: -0.2087 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 5MFX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 18-NOV-16. REMARK 100 THE DEPOSITION ID IS D_1200002413. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-SEP-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.976300 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS, XSCALE REMARK 200 DATA SCALING SOFTWARE : XSCALE, XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 57739 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.598 REMARK 200 RESOLUTION RANGE LOW (A) : 45.690 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 200 DATA REDUNDANCY : 3.000 REMARK 200 R MERGE (I) : 0.04000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.9500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.64 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.2 REMARK 200 DATA REDUNDANCY IN SHELL : 2.86 REMARK 200 R MERGE FOR SHELL (I) : 0.75600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.460 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2JLQ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.56 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.22 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% (W/V) ETHYLENE GLYCOL, 10% (W/V) REMARK 280 POLYETHYLENE GLYCOL 8000, 0.1 M MES/IMIDAZOLE PH 6.5, 20MM REMARK 280 SODIUM FORMATE, 20MM AMMONIUM ACETATE, 20MM TRI-SODIUM CITRATE, REMARK 280 20MM SODIUM POTASSIUM L-TARTRATE., VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 36.51850 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2210 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19640 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -15.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 173 REMARK 465 GLY A 174 REMARK 465 SER A 175 REMARK 465 SER A 176 REMARK 465 HIS A 177 REMARK 465 HIS A 178 REMARK 465 HIS A 179 REMARK 465 HIS A 180 REMARK 465 HIS A 181 REMARK 465 HIS A 182 REMARK 465 ARG A 617 REMARK 465 GLY A 618 REMARK 465 ALA A 619 REMARK 465 ALA A 620 REMARK 465 PHE A 621 REMARK 465 GLY A 622 REMARK 465 VAL A 623 REMARK 465 C B 6 REMARK 465 C B 7 REMARK 465 A B 8 REMARK 465 U B 9 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A 183 CG SD CE REMARK 470 LYS A 185 CG CD CE NZ REMARK 470 LYS A 186 CG CD CE NZ REMARK 470 LYS A 187 CG CD CE NZ REMARK 470 ARG A 202 CG CD NE CZ NH1 NH2 REMARK 470 ILE A 274 CG1 CG2 CD1 REMARK 470 ARG A 275 CG CD NE CZ NH1 NH2 REMARK 470 VAL A 276 CG1 CG2 REMARK 470 ARG A 367 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 389 CG CD CE NZ REMARK 470 GLU A 402 CG CD OE1 OE2 REMARK 470 LYS A 431 CG CD CE NZ REMARK 470 GLU A 438 CG CD OE1 OE2 REMARK 470 LYS A 466 CG CD CE NZ REMARK 470 GLU A 479 CG CD OE1 OE2 REMARK 470 ASP A 483 CG OD1 OD2 REMARK 470 TYR A 498 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLN A 500 CG CD OE1 NE2 REMARK 470 ILE A 518 CG1 CG2 CD1 REMARK 470 GLU A 519 CG CD OE1 OE2 REMARK 470 ASP A 574 CG OD1 OD2 REMARK 470 SER A 575 OG REMARK 470 ARG A 583 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 616 CG CD CE NZ REMARK 470 U B 5 C5' C4' O4' C3' O3' C2' O2' REMARK 470 U B 5 C1' N1 C2 O2 N3 C4 O4 REMARK 470 U B 5 C5 C6 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 1064 O HOH A 1106 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 A B 1 P A B 1 OP3 -0.096 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 203 -50.44 -120.29 REMARK 500 MET A 244 55.06 -103.14 REMARK 500 ARG A 323 70.24 -117.08 REMARK 500 ASP A 410 2.38 -64.45 REMARK 500 LYS A 591 74.07 -157.22 REMARK 500 CYS A 600 17.89 -144.25 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FLC A 702 DBREF1 5MFX A 183 623 UNP A0A160JCU6_ZIKV DBREF2 5MFX A A0A160JCU6 1685 2125 DBREF 5MFX B 1 9 PDB 5MFX 5MFX 1 9 SEQADV 5MFX MET A 173 UNP A0A160JCU INITIATING METHIONINE SEQADV 5MFX GLY A 174 UNP A0A160JCU EXPRESSION TAG SEQADV 5MFX SER A 175 UNP A0A160JCU EXPRESSION TAG SEQADV 5MFX SER A 176 UNP A0A160JCU EXPRESSION TAG SEQADV 5MFX HIS A 177 UNP A0A160JCU EXPRESSION TAG SEQADV 5MFX HIS A 178 UNP A0A160JCU EXPRESSION TAG SEQADV 5MFX HIS A 179 UNP A0A160JCU EXPRESSION TAG SEQADV 5MFX HIS A 180 UNP A0A160JCU EXPRESSION TAG SEQADV 5MFX HIS A 181 UNP A0A160JCU EXPRESSION TAG SEQADV 5MFX HIS A 182 UNP A0A160JCU EXPRESSION TAG SEQRES 1 A 451 MET GLY SER SER HIS HIS HIS HIS HIS HIS MET LEU LYS SEQRES 2 A 451 LYS LYS GLN LEU THR VAL LEU ASP LEU HIS PRO GLY ALA SEQRES 3 A 451 GLY LYS THR ARG ARG VAL LEU PRO GLU ILE VAL ARG GLU SEQRES 4 A 451 ALA ILE LYS THR ARG LEU ARG THR VAL ILE LEU ALA PRO SEQRES 5 A 451 THR ARG VAL VAL ALA ALA GLU MET GLU GLU ALA LEU ARG SEQRES 6 A 451 GLY LEU PRO VAL ARG TYR MET THR THR ALA VAL ASN VAL SEQRES 7 A 451 THR HIS SER GLY THR GLU ILE VAL ASP LEU MET CYS HIS SEQRES 8 A 451 ALA THR PHE THR SER ARG LEU LEU GLN PRO ILE ARG VAL SEQRES 9 A 451 PRO ASN TYR ASN LEU TYR ILE MET ASP GLU ALA HIS PHE SEQRES 10 A 451 THR ASP PRO SER SER ILE ALA ALA ARG GLY TYR ILE SER SEQRES 11 A 451 THR ARG VAL GLU MET GLY GLU ALA ALA ALA ILE PHE MET SEQRES 12 A 451 THR ALA THR PRO PRO GLY THR ARG ASP ALA PHE PRO ASP SEQRES 13 A 451 SER ASN SER PRO ILE MET ASP THR GLU VAL GLU VAL PRO SEQRES 14 A 451 GLU ARG ALA TRP SER SER GLY PHE ASP TRP VAL THR ASP SEQRES 15 A 451 TYR SER GLY LYS THR VAL TRP PHE VAL PRO SER VAL ARG SEQRES 16 A 451 ASN GLY ASN GLU ILE ALA ALA CYS LEU THR LYS ALA GLY SEQRES 17 A 451 LYS ARG VAL ILE GLN LEU SER ARG LYS THR PHE GLU THR SEQRES 18 A 451 GLU PHE GLN LYS THR LYS HIS GLN GLU TRP ASP PHE VAL SEQRES 19 A 451 VAL THR THR ASP ILE SER GLU MET GLY ALA ASN PHE LYS SEQRES 20 A 451 ALA ASP ARG VAL ILE ASP SER ARG ARG CYS LEU LYS PRO SEQRES 21 A 451 VAL ILE LEU ASP GLY GLU ARG VAL ILE LEU ALA GLY PRO SEQRES 22 A 451 MET PRO VAL THR HIS ALA SER ALA ALA GLN ARG ARG GLY SEQRES 23 A 451 ARG ILE GLY ARG ASN PRO ASN LYS PRO GLY ASP GLU TYR SEQRES 24 A 451 LEU TYR GLY GLY GLY CYS ALA GLU THR ASP GLU ASP HIS SEQRES 25 A 451 ALA HIS TRP LEU GLU ALA ARG MET LEU LEU ASP ASN ILE SEQRES 26 A 451 TYR LEU GLN ASP GLY LEU ILE ALA SER LEU TYR ARG PRO SEQRES 27 A 451 GLU ALA ASP LYS VAL ALA ALA ILE GLU GLY GLU PHE LYS SEQRES 28 A 451 LEU ARG THR GLU GLN ARG LYS THR PHE VAL GLU LEU MET SEQRES 29 A 451 LYS ARG GLY ASP LEU PRO VAL TRP LEU ALA TYR GLN VAL SEQRES 30 A 451 ALA SER ALA GLY ILE THR TYR THR ASP ARG ARG TRP CYS SEQRES 31 A 451 PHE ASP GLY THR THR ASN ASN THR ILE MET GLU ASP SER SEQRES 32 A 451 VAL PRO ALA GLU VAL TRP THR ARG HIS GLY GLU LYS ARG SEQRES 33 A 451 VAL LEU LYS PRO ARG TRP MET ASP ALA ARG VAL CYS SER SEQRES 34 A 451 ASP HIS ALA ALA LEU LYS SER PHE LYS GLU PHE ALA ALA SEQRES 35 A 451 GLY LYS ARG GLY ALA ALA PHE GLY VAL SEQRES 1 B 9 A G A C U C C A U HET ACT A 701 4 HET FLC A 702 13 HETNAM ACT ACETATE ION HETNAM FLC CITRATE ANION FORMUL 3 ACT C2 H3 O2 1- FORMUL 4 FLC C6 H5 O7 3- FORMUL 5 HOH *387(H2 O) HELIX 1 AA1 ARG A 203 THR A 215 1 13 HELIX 2 AA2 THR A 225 LEU A 236 1 12 HELIX 3 AA3 HIS A 263 GLN A 272 1 10 HELIX 4 AA4 ASP A 291 MET A 307 1 17 HELIX 5 AA5 PHE A 349 ASP A 354 1 6 HELIX 6 AA6 SER A 365 ALA A 379 1 15 HELIX 7 AA7 THR A 390 GLN A 401 1 12 HELIX 8 AA8 ASP A 410 MET A 414 5 5 HELIX 9 AA9 THR A 449 GLY A 458 1 10 HELIX 10 AB1 ALA A 485 ASP A 495 1 11 HELIX 11 AB2 LEU A 499 LEU A 503 5 5 HELIX 12 AB3 TYR A 508 ASP A 513 1 6 HELIX 13 AB4 ARG A 525 ARG A 538 1 14 HELIX 14 AB5 PRO A 542 ALA A 552 1 11 HELIX 15 AB6 ARG A 559 PHE A 563 5 5 HELIX 16 AB7 THR A 566 THR A 570 5 5 HELIX 17 AB8 ASP A 596 CYS A 600 5 5 HELIX 18 AB9 ASP A 602 GLY A 615 1 14 SHEET 1 AA1 6 LEU A 189 ASP A 193 0 SHEET 2 AA1 6 ALA A 311 THR A 316 1 O PHE A 314 N LEU A 192 SHEET 3 AA1 6 LEU A 281 ASP A 285 1 N MET A 284 O ILE A 313 SHEET 4 AA1 6 THR A 219 ALA A 223 1 N LEU A 222 O ILE A 283 SHEET 5 AA1 6 VAL A 258 CYS A 262 1 O ASP A 259 N THR A 219 SHEET 6 AA1 6 VAL A 241 TYR A 243 1 N ARG A 242 O VAL A 258 SHEET 1 AA2 6 MET A 334 GLU A 337 0 SHEET 2 AA2 6 GLU A 470 TYR A 473 1 O TYR A 471 N MET A 334 SHEET 3 AA2 6 ARG A 422 ASP A 425 1 N ASP A 425 O LEU A 472 SHEET 4 AA2 6 THR A 359 PHE A 362 1 N VAL A 360 O ARG A 422 SHEET 5 AA2 6 PHE A 405 THR A 408 1 O VAL A 406 N TRP A 361 SHEET 6 AA2 6 VAL A 383 LEU A 386 1 N ILE A 384 O VAL A 407 SHEET 1 AA3 2 ARG A 428 LEU A 435 0 SHEET 2 AA3 2 ARG A 439 PRO A 447 -1 O ILE A 441 N VAL A 433 SHEET 1 AA4 2 MET A 572 GLU A 573 0 SHEET 2 AA4 2 VAL A 576 PRO A 577 -1 O VAL A 576 N GLU A 573 SHEET 1 AA5 2 GLU A 579 TRP A 581 0 SHEET 2 AA5 2 LYS A 587 VAL A 589 -1 O ARG A 588 N VAL A 580 CISPEP 1 GLY A 444 PRO A 445 0 5.23 SITE 1 AC1 6 ARG A 323 THR A 449 HIS A 450 ALA A 478 SITE 2 AC1 6 ASP A 481 HOH A 914 SITE 1 AC2 12 PRO A 196 GLY A 197 ALA A 198 GLY A 199 SITE 2 AC2 12 LYS A 200 THR A 201 ARG A 202 ARG A 459 SITE 3 AC2 12 ARG A 462 HOH A 805 HOH A 810 HOH A1045 CRYST1 52.355 73.037 58.696 90.00 93.97 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019100 0.000000 0.001325 0.00000 SCALE2 0.000000 0.013692 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017078 0.00000