HEADER LIGASE 22-NOV-16 5MGV TITLE KINETIC AND STRUCTURAL CHANGES IN HSMTPHERS, INDUCED BY PATHOGENIC TITLE 2 MUTATIONS IN HUMAN FARS2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHENYLALANINE--TRNA LIGASE, MITOCHONDRIAL; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PHENYLALANYL-TRNA SYNTHETASE,PHERS; COMPND 5 EC: 6.1.1.20; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: FARS2, FARS1, HSPC320; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS CRYSTAL STRUCTURE OF PATHOGENIC HUMAN MITOCHONDRIAL PHERS, MOLECULAR KEYWDS 2 DYNAMIC, KINETIK STUDY, AMINOACYLATION, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR E.KARTVELISHVILI,D.TWOROWSKI,H.VERNON,Z.CHRZANOWSKA-LIGHTOWLERS, AUTHOR 2 N.MOOR,J.WANG,L.-J.WONG,M.SAFRO REVDAT 5 08-MAY-24 5MGV 1 REMARK REVDAT 4 16-OCT-19 5MGV 1 REMARK REVDAT 3 24-OCT-18 5MGV 1 REMARK LINK REVDAT 2 02-AUG-17 5MGV 1 REVDAT 1 03-MAY-17 5MGV 0 JRNL AUTH E.KARTVELISHVILI,D.TWOROWSKI,H.VERNON,N.MOOR,J.WANG, JRNL AUTH 2 L.J.WONG,Z.CHRZANOWSKA-LIGHTOWLERS,M.SAFRO JRNL TITL KINETIC AND STRUCTURAL CHANGES IN HSMTPHERS, INDUCED BY JRNL TITL 2 PATHOGENIC MUTATIONS IN HUMAN FARS2. JRNL REF PROTEIN SCI. V. 26 1505 2017 JRNL REFN ESSN 1469-896X JRNL PMID 28419689 JRNL DOI 10.1002/PRO.3176 REMARK 2 REMARK 2 RESOLUTION. 2.05 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.05 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 93.2 REMARK 3 NUMBER OF REFLECTIONS : 28291 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : 0.228 REMARK 3 FREE R VALUE : 0.271 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.500 REMARK 3 FREE R VALUE TEST SET COUNT : 1373 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3358 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 249 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.04 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.33600 REMARK 3 B22 (A**2) : -1.16500 REMARK 3 B33 (A**2) : -1.17200 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : NULL REMARK 3 BOND ANGLES (DEGREES) : NULL REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : 41.25 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : CNS_TOPPAR:PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : CNS_TOPPAR:DNA-RNA_REP.PARAM REMARK 3 PARAMETER FILE 3 : CNS_TOPPAR:WATER_REP.PARAM REMARK 3 PARAMETER FILE 4 : CNS_TOPPAR:ION.PARAM REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 TOPOLOGY FILE 2 : NULL REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5MGV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 22-NOV-16. REMARK 100 THE DEPOSITION ID IS D_1200002444. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-FEB-16 REMARK 200 TEMPERATURE (KELVIN) : 295 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28291 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.050 REMARK 200 RESOLUTION RANGE LOW (A) : 50.050 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 19.80 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 25.2200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.37 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.48 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2 MM DTT, 100 MM BIS-TRIS PROPANE PH 7 REMARK 280 AND 1.8 M SODIUM ACETATE PH 7, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 27.38500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 47.58500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 45.18500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 47.58500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 27.38500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 45.18500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19140 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O TYR A 289 N ILE A 290 1.34 REMARK 500 O GLN A 269 N ASP A 270 1.51 REMARK 500 O HIS A 372 N LYS A 373 1.68 REMARK 500 NH2 ARG A 40 OE1 GLN A 45 2.01 REMARK 500 OE2 GLU A 55 O HOH A 501 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLN A 46 C HIS A 47 N 0.195 REMARK 500 GLN A 180 C LEU A 181 N 0.193 REMARK 500 GLU A 222 C LEU A 223 N 0.138 REMARK 500 GLU A 248 C TRP A 249 N -0.176 REMARK 500 GLN A 269 C ASP A 270 N -0.323 REMARK 500 LEU A 278 C GLY A 279 N 0.207 REMARK 500 TYR A 289 C ILE A 290 N -0.299 REMARK 500 GLU A 299 C ASP A 300 N 0.144 REMARK 500 PRO A 336 C SER A 337 N -0.144 REMARK 500 LYS A 365 C PHE A 366 N 0.198 REMARK 500 HIS A 372 C LYS A 373 N -0.267 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLN A 180 O - C - N ANGL. DEV. = 10.1 DEGREES REMARK 500 GLU A 248 O - C - N ANGL. DEV. = -15.6 DEGREES REMARK 500 GLN A 269 CA - C - N ANGL. DEV. = 21.3 DEGREES REMARK 500 GLN A 269 O - C - N ANGL. DEV. = -38.9 DEGREES REMARK 500 ASP A 270 C - N - CA ANGL. DEV. = 22.9 DEGREES REMARK 500 ASP A 270 O - C - N ANGL. DEV. = -26.4 DEGREES REMARK 500 LEU A 278 CA - C - N ANGL. DEV. = -12.7 DEGREES REMARK 500 LEU A 278 O - C - N ANGL. DEV. = 10.8 DEGREES REMARK 500 TYR A 288 O - C - N ANGL. DEV. = -10.9 DEGREES REMARK 500 TYR A 289 CB - CA - C ANGL. DEV. = -15.1 DEGREES REMARK 500 TYR A 289 CB - CG - CD1 ANGL. DEV. = -6.2 DEGREES REMARK 500 TYR A 289 CA - C - N ANGL. DEV. = 44.2 DEGREES REMARK 500 TYR A 289 O - C - N ANGL. DEV. = -50.9 DEGREES REMARK 500 ILE A 290 C - N - CA ANGL. DEV. = 24.4 DEGREES REMARK 500 GLU A 301 O - C - N ANGL. DEV. = -11.9 DEGREES REMARK 500 PRO A 336 O - C - N ANGL. DEV. = -23.1 DEGREES REMARK 500 LYS A 365 O - C - N ANGL. DEV. = 9.7 DEGREES REMARK 500 HIS A 372 CA - C - N ANGL. DEV. = 24.7 DEGREES REMARK 500 HIS A 372 O - C - N ANGL. DEV. = -29.1 DEGREES REMARK 500 LYS A 373 C - N - CA ANGL. DEV. = 43.1 DEGREES REMARK 500 LYS A 373 O - C - N ANGL. DEV. = -15.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 29 30.47 -154.24 REMARK 500 HIS A 47 -22.49 79.75 REMARK 500 PHE A 90 -66.59 -120.43 REMARK 500 ASN A 111 -157.27 -164.86 REMARK 500 SER A 185 -145.52 -111.21 REMARK 500 ASP A 221 13.09 -67.19 REMARK 500 HIS A 236 120.62 176.83 REMARK 500 TYR A 289 66.70 20.75 REMARK 500 GLU A 299 25.25 -140.04 REMARK 500 GLU A 301 4.94 -58.17 REMARK 500 LYS A 317 63.16 -115.47 REMARK 500 ASN A 343 -4.42 -48.07 REMARK 500 ASP A 364 148.24 -170.47 REMARK 500 LYS A 370 -70.90 -54.79 REMARK 500 HIS A 372 23.72 89.54 REMARK 500 LYS A 373 97.85 -178.72 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 TYR A 288 TYR A 289 -145.60 REMARK 500 HIS A 372 LYS A 373 -97.46 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 GLU A 222 -13.84 REMARK 500 GLU A 248 12.78 REMARK 500 GLN A 269 41.21 REMARK 500 ASP A 270 33.23 REMARK 500 TYR A 288 -18.77 REMARK 500 TYR A 289 -41.70 REMARK 500 GLU A 301 -18.43 REMARK 500 PRO A 336 -30.49 REMARK 500 HIS A 372 -20.46 REMARK 500 LYS A 373 26.48 REMARK 500 REMARK 500 REMARK: NULL DBREF 5MGV A 11 415 UNP O95363 SYFM_HUMAN 47 451 SEQADV 5MGV TYR A 289 UNP O95363 ASP 325 ENGINEERED MUTATION SEQRES 1 A 405 PRO GLY SER VAL VAL GLU LEU LEU GLY LYS SER TYR PRO SEQRES 2 A 405 GLN ASP ASP HIS SER ASN LEU THR ARG LYS VAL LEU THR SEQRES 3 A 405 ARG VAL GLY ARG ASN LEU HIS ASN GLN GLN HIS HIS PRO SEQRES 4 A 405 LEU TRP LEU ILE LYS GLU ARG VAL LYS GLU HIS PHE TYR SEQRES 5 A 405 LYS GLN TYR VAL GLY ARG PHE GLY THR PRO LEU PHE SER SEQRES 6 A 405 VAL TYR ASP ASN LEU SER PRO VAL VAL THR THR TRP GLN SEQRES 7 A 405 ASN PHE ASP SER LEU LEU ILE PRO ALA ASP HIS PRO SER SEQRES 8 A 405 ARG LYS LYS GLY ASP ASN TYR TYR LEU ASN ARG THR HIS SEQRES 9 A 405 MET LEU ARG ALA HIS THR SER ALA HIS GLN TRP ASP LEU SEQRES 10 A 405 LEU HIS ALA GLY LEU ASP ALA PHE LEU VAL VAL GLY ASP SEQRES 11 A 405 VAL TYR ARG ARG ASP GLN ILE ASP SER GLN HIS TYR PRO SEQRES 12 A 405 ILE PHE HIS GLN LEU GLU ALA VAL ARG LEU PHE SER LYS SEQRES 13 A 405 HIS GLU LEU PHE ALA GLY ILE LYS ASP GLY GLU SER LEU SEQRES 14 A 405 GLN LEU PHE GLU GLN SER SER ARG SER ALA HIS LYS GLN SEQRES 15 A 405 GLU THR HIS THR MET GLU ALA VAL LYS LEU VAL GLU PHE SEQRES 16 A 405 ASP LEU LYS GLN THR LEU THR ARG LEU MET ALA HIS LEU SEQRES 17 A 405 PHE GLY ASP GLU LEU GLU ILE ARG TRP VAL ASP CYS TYR SEQRES 18 A 405 PHE PRO PHE THR HIS PRO SER PHE GLU MET GLU ILE ASN SEQRES 19 A 405 PHE HIS GLY GLU TRP LEU GLU VAL LEU GLY CYS GLY VAL SEQRES 20 A 405 MET GLU GLN GLN LEU VAL ASN SER ALA GLY ALA GLN ASP SEQRES 21 A 405 ARG ILE GLY TRP ALA PHE GLY LEU GLY LEU GLU ARG LEU SEQRES 22 A 405 ALA MET ILE LEU TYR TYR ILE PRO ASP ILE ARG LEU PHE SEQRES 23 A 405 TRP CYS GLU ASP GLU ARG PHE LEU LYS GLN PHE CYS VAL SEQRES 24 A 405 SER ASN ILE ASN GLN LYS VAL LYS PHE GLN PRO LEU SER SEQRES 25 A 405 LYS TYR PRO ALA VAL ILE ASN ASP ILE SER PHE TRP LEU SEQRES 26 A 405 PRO SER GLU ASN TYR ALA GLU ASN ASP PHE TYR ASP LEU SEQRES 27 A 405 VAL ARG THR ILE GLY GLY ASP LEU VAL GLU LYS VAL ASP SEQRES 28 A 405 LEU ILE ASP LYS PHE VAL HIS PRO LYS THR HIS LYS THR SEQRES 29 A 405 SER HIS CYS TYR ARG ILE THR TYR ARG HIS MET GLU ARG SEQRES 30 A 405 THR LEU SER GLN ARG GLU VAL ARG HIS ILE HIS GLN ALA SEQRES 31 A 405 LEU GLN GLU ALA ALA VAL GLN LEU LEU GLY VAL GLU GLY SEQRES 32 A 405 ARG PHE FORMUL 2 HOH *249(H2 O) HELIX 1 AA1 THR A 31 VAL A 38 1 8 HELIX 2 AA2 ASN A 41 GLN A 45 5 5 HELIX 3 AA3 HIS A 48 ARG A 68 1 21 HELIX 4 AA4 THR A 86 PHE A 90 1 5 HELIX 5 AA5 ASP A 91 LEU A 94 5 4 HELIX 6 AA6 HIS A 99 ASN A 107 5 9 HELIX 7 AA7 HIS A 119 ALA A 122 5 4 HELIX 8 AA8 HIS A 123 ALA A 130 1 8 HELIX 9 AA9 SER A 165 PHE A 170 1 6 HELIX 10 AB1 ASP A 175 LEU A 179 5 5 HELIX 11 AB2 THR A 196 GLY A 220 1 25 HELIX 12 AB3 GLU A 259 ALA A 266 1 8 HELIX 13 AB4 LEU A 280 TYR A 289 1 10 HELIX 14 AB5 ASP A 292 TRP A 297 5 6 HELIX 15 AB6 ASP A 300 LYS A 305 1 6 HELIX 16 AB7 GLN A 306 CYS A 308 5 3 HELIX 17 AB8 ALA A 341 GLY A 353 1 13 HELIX 18 AB9 SER A 390 GLN A 407 1 18 SHEET 1 AA1 2 VAL A 14 LEU A 17 0 SHEET 2 AA1 2 LYS A 20 PRO A 23 -1 O TYR A 22 N VAL A 15 SHEET 1 AA2 7 SER A 75 TYR A 77 0 SHEET 2 AA2 7 ALA A 134 TYR A 142 1 O LEU A 136 N TYR A 77 SHEET 3 AA2 7 ILE A 154 PHE A 164 -1 O GLU A 159 N VAL A 137 SHEET 4 AA2 7 ILE A 272 GLY A 279 -1 O ILE A 272 N PHE A 164 SHEET 5 AA2 7 TRP A 249 MET A 258 -1 N GLY A 254 O GLY A 277 SHEET 6 AA2 7 THR A 235 ASN A 244 -1 N ILE A 243 O LEU A 250 SHEET 7 AA2 7 ILE A 225 PHE A 232 -1 N ARG A 226 O GLU A 242 SHEET 1 AA3 2 VAL A 83 THR A 85 0 SHEET 2 AA3 2 HIS A 114 LEU A 116 -1 O MET A 115 N VAL A 84 SHEET 1 AA4 3 VAL A 327 TRP A 334 0 SHEET 2 AA4 3 THR A 374 TYR A 382 -1 O TYR A 382 N VAL A 327 SHEET 3 AA4 3 VAL A 357 VAL A 367 -1 N PHE A 366 O SER A 375 CISPEP 1 HIS A 236 PRO A 237 0 0.03 CRYST1 54.770 90.370 95.170 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018258 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011066 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010508 0.00000