HEADER TRANSFERASE 22-NOV-16 5MGZ TITLE STREPTOMYCES SPHEROIDES NOVO (8-DEMETHYLNOVBIOCIC ACID TITLE 2 METHYLTRANSFERASE) WITH SAH COMPND MOL_ID: 1; COMPND 2 MOLECULE: 8-DEMETHYLNOVOBIOCIC ACID C(8)-METHYLTRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: NOVOBIOCIN BIOSYNTHESIS PROTEIN O; COMPND 5 EC: 2.1.1.284; COMPND 6 ENGINEERED: YES; COMPND 7 OTHER_DETAILS: SAH SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOMYCES NIVEUS; SOURCE 3 ORGANISM_TAXID: 193462; SOURCE 4 GENE: NOVO; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET26B+ KEYWDS C METHYLTRANSFERASE, NOVOBIOCIN BIOSYNTHESIS, SAM DEPENDENT, KEYWDS 2 TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR C.-W.CHUNG,J.MOSLEY,J.C.SADLER REVDAT 2 01-MAR-17 5MGZ 1 JRNL REVDAT 1 18-JAN-17 5MGZ 0 JRNL AUTH J.C.SADLER,C.H.CHUNG,J.E.MOSLEY,G.A.BURLEY,L.D.HUMPHREYS JRNL TITL STRUCTURAL AND FUNCTIONAL BASIS OF C-METHYLATION OF COUMARIN JRNL TITL 2 SCAFFOLDS BY NOVO. JRNL REF ACS CHEM. BIOL. V. 12 374 2017 JRNL REFN ESSN 1554-8937 JRNL PMID 28068060 JRNL DOI 10.1021/ACSCHEMBIO.6B01053 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0073 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 80.45 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 90.7 REMARK 3 NUMBER OF REFLECTIONS : 31566 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.179 REMARK 3 R VALUE (WORKING SET) : 0.178 REMARK 3 FREE R VALUE : 0.202 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1654 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1304 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 51.30 REMARK 3 BIN R VALUE (WORKING SET) : 0.2000 REMARK 3 BIN FREE R VALUE SET COUNT : 62 REMARK 3 BIN FREE R VALUE : 0.2010 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3572 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 62 REMARK 3 SOLVENT ATOMS : 650 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.73 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.66000 REMARK 3 B22 (A**2) : -0.92000 REMARK 3 B33 (A**2) : 0.12000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 1.37000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.196 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.149 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.092 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.210 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.949 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.929 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3765 ; 0.005 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3515 ; 0.006 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5112 ; 1.032 ; 1.961 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8050 ; 0.700 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 472 ; 9.199 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 183 ;30.275 ;23.005 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 595 ;12.287 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 37 ;10.845 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 555 ; 0.053 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4344 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 913 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1874 ; 0.739 ; 2.574 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1872 ; 0.739 ; 2.574 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2344 ; 1.337 ; 5.776 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2345 ; 1.337 ; 5.775 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1891 ; 0.665 ; 2.612 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1892 ; 0.666 ; 2.612 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2767 ; 1.259 ; 5.801 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 4862 ; 4.052 ;11.973 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 4862 ; 4.052 ;11.973 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 230 REMARK 3 ORIGIN FOR THE GROUP (A): 15.5741 2.7342 49.8537 REMARK 3 T TENSOR REMARK 3 T11: 0.0287 T22: 0.0214 REMARK 3 T33: 0.0335 T12: 0.0095 REMARK 3 T13: -0.0060 T23: -0.0222 REMARK 3 L TENSOR REMARK 3 L11: 0.3885 L22: 0.5432 REMARK 3 L33: 0.4924 L12: -0.0306 REMARK 3 L13: -0.2186 L23: 0.4590 REMARK 3 S TENSOR REMARK 3 S11: -0.0107 S12: 0.0513 S13: -0.0865 REMARK 3 S21: -0.0250 S22: -0.0242 S23: -0.0287 REMARK 3 S31: -0.0260 S32: -0.0593 S33: 0.0349 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 230 REMARK 3 ORIGIN FOR THE GROUP (A): 1.9841 36.3935 71.9327 REMARK 3 T TENSOR REMARK 3 T11: 0.0263 T22: 0.0300 REMARK 3 T33: 0.0226 T12: 0.0027 REMARK 3 T13: -0.0152 T23: 0.0018 REMARK 3 L TENSOR REMARK 3 L11: 0.0999 L22: 0.3969 REMARK 3 L33: 0.2189 L12: -0.1577 REMARK 3 L13: -0.0736 L23: 0.2252 REMARK 3 S TENSOR REMARK 3 S11: 0.0370 S12: -0.0062 S13: -0.0014 REMARK 3 S21: -0.0443 S22: -0.0453 S23: -0.0254 REMARK 3 S31: -0.0243 S32: -0.0359 S33: 0.0082 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5MGZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 22-NOV-16. REMARK 100 THE DEPOSITION ID IS D_1200002448. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-SEP-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97916 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 201009 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 80.450 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 90.7 REMARK 200 DATA REDUNDANCY : 6.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 22.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 53.2 REMARK 200 DATA REDUNDANCY IN SHELL : 3.80 REMARK 200 R MERGE FOR SHELL (I) : 0.08000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 10.60 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: AUTOSHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.89 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.32 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M 2-(N-MORPHOLINO)ETHANESULFONIC REMARK 280 ACID (MES) PH 6.5, 20% W/V POLY(ETHYLENE GLYCOL) (PEG)-4K, 0.6 M REMARK 280 NACL, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 33.48500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2240 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18470 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -12.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A 231 REMARK 465 HIS A 232 REMARK 465 HIS A 233 REMARK 465 HIS A 234 REMARK 465 HIS A 235 REMARK 465 HIS A 236 REMARK 465 HIS B 231 REMARK 465 HIS B 232 REMARK 465 HIS B 233 REMARK 465 HIS B 234 REMARK 465 HIS B 235 REMARK 465 HIS B 236 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ARG A 168 C PRO A 169 N 0.131 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 169 C - N - CA ANGL. DEV. = -14.7 DEGREES REMARK 500 PRO B 169 C - N - CA ANGL. DEV. = -14.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 118 -41.54 -141.62 REMARK 500 SER A 172 -116.28 50.58 REMARK 500 ALA B 21 55.53 -148.50 REMARK 500 ALA B 118 -36.43 -140.82 REMARK 500 SER B 172 -121.03 52.27 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ARG A 168 PRO A 169 55.14 REMARK 500 ARG B 168 PRO B 169 -64.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 773 DISTANCE = 6.27 ANGSTROMS REMARK 525 HOH B 774 DISTANCE = 6.41 ANGSTROMS REMARK 525 HOH B 775 DISTANCE = 6.81 ANGSTROMS REMARK 525 HOH B 776 DISTANCE = 6.85 ANGSTROMS REMARK 525 HOH B 777 DISTANCE = 7.20 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SAH A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SAH B 301 DBREF 5MGZ A 1 230 UNP Q9L9F3 NOVO_STRNV 1 230 DBREF 5MGZ B 1 230 UNP Q9L9F3 NOVO_STRNV 1 230 SEQADV 5MGZ HIS A 231 UNP Q9L9F3 EXPRESSION TAG SEQADV 5MGZ HIS A 232 UNP Q9L9F3 EXPRESSION TAG SEQADV 5MGZ HIS A 233 UNP Q9L9F3 EXPRESSION TAG SEQADV 5MGZ HIS A 234 UNP Q9L9F3 EXPRESSION TAG SEQADV 5MGZ HIS A 235 UNP Q9L9F3 EXPRESSION TAG SEQADV 5MGZ HIS A 236 UNP Q9L9F3 EXPRESSION TAG SEQADV 5MGZ HIS B 231 UNP Q9L9F3 EXPRESSION TAG SEQADV 5MGZ HIS B 232 UNP Q9L9F3 EXPRESSION TAG SEQADV 5MGZ HIS B 233 UNP Q9L9F3 EXPRESSION TAG SEQADV 5MGZ HIS B 234 UNP Q9L9F3 EXPRESSION TAG SEQADV 5MGZ HIS B 235 UNP Q9L9F3 EXPRESSION TAG SEQADV 5MGZ HIS B 236 UNP Q9L9F3 EXPRESSION TAG SEQRES 1 A 236 MET LYS ILE GLU ALA ILE THR GLY SER GLU ALA GLU ALA SEQRES 2 A 236 PHE HIS ARG MET GLY SER GLN ALA SER HIS ARG TYR ASP SEQRES 3 A 236 GLU PHE VAL ASP LEU LEU VAL GLY ALA GLY ILE ALA ASP SEQRES 4 A 236 GLY GLN THR VAL VAL ASP LEU CYS CYS GLY SER GLY GLU SEQRES 5 A 236 LEU GLU VAL ILE LEU SER SER ARG PHE PRO SER LEU ASN SEQRES 6 A 236 LEU VAL GLY VAL ASP LEU SER GLU ASP MET VAL ARG ILE SEQRES 7 A 236 ALA ARG GLU TYR ALA ALA GLU GLN GLY LYS ALA LEU GLU SEQRES 8 A 236 PHE ARG HIS GLY ASP ALA GLN LEU LEU ALA GLY MET GLU SEQRES 9 A 236 ASP LEU ALA GLY LYS ALA ASP LEU VAL VAL SER ARG ASN SEQRES 10 A 236 ALA PHE HIS ARG LEU THR ARG LEU PRO ALA ALA PHE ASP SEQRES 11 A 236 THR MET LEU ARG LEU ALA LYS PRO GLY GLY ALA VAL LEU SEQRES 12 A 236 ASN CYS SER PHE ILE HIS PRO SER ASP PHE ASP GLU SER SEQRES 13 A 236 GLY PHE ARG ALA TRP VAL THR PHE LEU ASN GLN ARG PRO SEQRES 14 A 236 TRP ASP SER GLU MET GLN ILE VAL TRP ALA LEU ALA HIS SEQRES 15 A 236 HIS TYR ALA PRO ARG LEU ASP ASP TYR ARG GLU ALA LEU SEQRES 16 A 236 ALA GLN ALA ALA ARG GLU THR PRO VAL SER GLU GLN ARG SEQRES 17 A 236 VAL TRP ILE ASP ASP GLN GLY TYR GLY VAL PRO THR VAL SEQRES 18 A 236 LYS CYS PHE ALA ARG ARG ALA ALA ALA HIS HIS HIS HIS SEQRES 19 A 236 HIS HIS SEQRES 1 B 236 MET LYS ILE GLU ALA ILE THR GLY SER GLU ALA GLU ALA SEQRES 2 B 236 PHE HIS ARG MET GLY SER GLN ALA SER HIS ARG TYR ASP SEQRES 3 B 236 GLU PHE VAL ASP LEU LEU VAL GLY ALA GLY ILE ALA ASP SEQRES 4 B 236 GLY GLN THR VAL VAL ASP LEU CYS CYS GLY SER GLY GLU SEQRES 5 B 236 LEU GLU VAL ILE LEU SER SER ARG PHE PRO SER LEU ASN SEQRES 6 B 236 LEU VAL GLY VAL ASP LEU SER GLU ASP MET VAL ARG ILE SEQRES 7 B 236 ALA ARG GLU TYR ALA ALA GLU GLN GLY LYS ALA LEU GLU SEQRES 8 B 236 PHE ARG HIS GLY ASP ALA GLN LEU LEU ALA GLY MET GLU SEQRES 9 B 236 ASP LEU ALA GLY LYS ALA ASP LEU VAL VAL SER ARG ASN SEQRES 10 B 236 ALA PHE HIS ARG LEU THR ARG LEU PRO ALA ALA PHE ASP SEQRES 11 B 236 THR MET LEU ARG LEU ALA LYS PRO GLY GLY ALA VAL LEU SEQRES 12 B 236 ASN CYS SER PHE ILE HIS PRO SER ASP PHE ASP GLU SER SEQRES 13 B 236 GLY PHE ARG ALA TRP VAL THR PHE LEU ASN GLN ARG PRO SEQRES 14 B 236 TRP ASP SER GLU MET GLN ILE VAL TRP ALA LEU ALA HIS SEQRES 15 B 236 HIS TYR ALA PRO ARG LEU ASP ASP TYR ARG GLU ALA LEU SEQRES 16 B 236 ALA GLN ALA ALA ARG GLU THR PRO VAL SER GLU GLN ARG SEQRES 17 B 236 VAL TRP ILE ASP ASP GLN GLY TYR GLY VAL PRO THR VAL SEQRES 18 B 236 LYS CYS PHE ALA ARG ARG ALA ALA ALA HIS HIS HIS HIS SEQRES 19 B 236 HIS HIS HET SAH A 301 26 HET GOL A 302 6 HET ACT A 303 4 HET SAH B 301 26 HETNAM SAH S-ADENOSYL-L-HOMOCYSTEINE HETNAM GOL GLYCEROL HETNAM ACT ACETATE ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 SAH 2(C14 H20 N6 O5 S) FORMUL 4 GOL C3 H8 O3 FORMUL 5 ACT C2 H3 O2 1- FORMUL 7 HOH *650(H2 O) HELIX 1 AA1 THR A 7 SER A 19 1 13 HELIX 2 AA2 GLN A 20 ARG A 24 5 5 HELIX 3 AA3 TYR A 25 GLY A 36 1 12 HELIX 4 AA4 GLY A 51 PHE A 61 1 11 HELIX 5 AA5 SER A 72 GLN A 86 1 15 HELIX 6 AA6 MET A 103 ALA A 107 5 5 HELIX 7 AA7 ALA A 118 LEU A 122 5 5 HELIX 8 AA8 ARG A 124 LEU A 135 1 12 HELIX 9 AA9 HIS A 149 PHE A 153 5 5 HELIX 10 AB1 ASP A 154 ASN A 166 1 13 HELIX 11 AB2 GLU A 173 TYR A 184 1 12 HELIX 12 AB3 ARG A 187 THR A 202 1 16 HELIX 13 AB4 THR B 7 SER B 19 1 13 HELIX 14 AB5 GLN B 20 ARG B 24 5 5 HELIX 15 AB6 TYR B 25 GLY B 36 1 12 HELIX 16 AB7 GLY B 51 PHE B 61 1 11 HELIX 17 AB8 SER B 72 GLN B 86 1 15 HELIX 18 AB9 MET B 103 ALA B 107 5 5 HELIX 19 AC1 ALA B 118 LEU B 122 5 5 HELIX 20 AC2 ARG B 124 LEU B 135 1 12 HELIX 21 AC3 HIS B 149 PHE B 153 5 5 HELIX 22 AC4 ASP B 154 ASN B 166 1 13 HELIX 23 AC5 GLU B 173 TYR B 184 1 12 HELIX 24 AC6 ARG B 187 THR B 202 1 16 SHEET 1 AA1 7 GLU A 91 HIS A 94 0 SHEET 2 AA1 7 ASN A 65 ASP A 70 1 N GLY A 68 O ARG A 93 SHEET 3 AA1 7 THR A 42 LEU A 46 1 N ASP A 45 O VAL A 67 SHEET 4 AA1 7 ALA A 110 ARG A 116 1 O VAL A 114 N VAL A 44 SHEET 5 AA1 7 ALA A 136 SER A 146 1 O LYS A 137 N ALA A 110 SHEET 6 AA1 7 THR A 220 ARG A 227 -1 O CYS A 223 N ASN A 144 SHEET 7 AA1 7 VAL A 204 ASP A 212 -1 N TRP A 210 O LYS A 222 SHEET 1 AA2 7 GLU B 91 HIS B 94 0 SHEET 2 AA2 7 ASN B 65 ASP B 70 1 N GLY B 68 O ARG B 93 SHEET 3 AA2 7 THR B 42 LEU B 46 1 N ASP B 45 O VAL B 67 SHEET 4 AA2 7 ALA B 110 ARG B 116 1 O VAL B 114 N LEU B 46 SHEET 5 AA2 7 ALA B 136 SER B 146 1 O LYS B 137 N ALA B 110 SHEET 6 AA2 7 THR B 220 ARG B 227 -1 O ALA B 225 N VAL B 142 SHEET 7 AA2 7 VAL B 204 ASP B 212 -1 N TRP B 210 O LYS B 222 SITE 1 AC1 24 GLU A 4 ALA A 5 ILE A 6 PHE A 14 SITE 2 AC1 24 TYR A 25 CYS A 47 CYS A 48 GLY A 49 SITE 3 AC1 24 ASP A 70 LEU A 71 SER A 72 MET A 75 SITE 4 AC1 24 GLY A 95 ASP A 96 ALA A 97 GLN A 98 SITE 5 AC1 24 ARG A 116 ASN A 117 ALA A 118 LEU A 122 SITE 6 AC1 24 ACT A 303 HOH A 417 HOH A 449 HOH A 457 SITE 1 AC2 5 ARG A 116 ASN A 117 TYR A 216 HOH A 421 SITE 2 AC2 5 HOH A 484 SITE 1 AC3 5 ASN A 117 HIS A 120 ARG A 121 ALA A 181 SITE 2 AC3 5 SAH A 301 SITE 1 AC4 23 GLU B 4 ALA B 5 ILE B 6 PHE B 14 SITE 2 AC4 23 TYR B 25 CYS B 47 CYS B 48 GLY B 49 SITE 3 AC4 23 ASP B 70 LEU B 71 SER B 72 MET B 75 SITE 4 AC4 23 GLY B 95 ASP B 96 ALA B 97 GLN B 98 SITE 5 AC4 23 ARG B 116 ASN B 117 ALA B 118 LEU B 122 SITE 6 AC4 23 HOH B 422 HOH B 438 HOH B 487 CRYST1 43.724 66.970 80.563 90.00 92.99 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022871 0.000000 0.001196 0.00000 SCALE2 0.000000 0.014932 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012430 0.00000