HEADER HYDROLASE 27-NOV-16 5MI7 TITLE BTGH84 MUTANT WITH COVALENT MODIFICATION BY MA4 IN COMPLEX WITH PUGNAC COMPND MOL_ID: 1; COMPND 2 MOLECULE: O-GLCNACASE BT_4395; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: BETA-N-ACETYLGLUCOSAMINIDASE,BETA-N-ACETYLHEXOSAMINIDASE, COMPND 5 BETA-HEXOSAMINIDASE,HEXOSAMINIDASE B,N-ACETYL-BETA-GLUCOSAMINIDASE; COMPND 6 EC: 3.2.1.169,3.2.1.52; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACTEROIDES THETAIOTAOMICRON VPI-5482; SOURCE 3 ORGANISM_TAXID: 226186; SOURCE 4 GENE: BT_4395; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693 KEYWDS HYDROLASE, ACTIVATOR EXPDTA X-RAY DIFFRACTION AUTHOR J.F.DARBY,G.J.DAVIES,R.E.HUBBARD REVDAT 3 17-JAN-24 5MI7 1 REMARK REVDAT 2 06-DEC-17 5MI7 1 JRNL REVDAT 1 01-NOV-17 5MI7 0 JRNL AUTH J.F.DARBY,M.ATOBE,J.D.FIRTH,P.BOND,G.J.DAVIES,P.O'BRIEN, JRNL AUTH 2 R.E.HUBBARD JRNL TITL INCREASE OF ENZYME ACTIVITY THROUGH SPECIFIC COVALENT JRNL TITL 2 MODIFICATION WITH FRAGMENTS. JRNL REF CHEM SCI V. 8 7772 2017 JRNL REFN ISSN 2041-6520 JRNL PMID 29163914 JRNL DOI 10.1039/C7SC01966A REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10_2155: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 100.62 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.6 REMARK 3 NUMBER OF REFLECTIONS : 58982 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.214 REMARK 3 R VALUE (WORKING SET) : 0.213 REMARK 3 FREE R VALUE : 0.249 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.020 REMARK 3 FREE R VALUE TEST SET COUNT : 5637 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.240 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 37.320 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 5636 REMARK 3 ANGLE : 0.581 7620 REMARK 3 CHIRALITY : 0.043 807 REMARK 3 PLANARITY : 0.004 984 REMARK 3 DIHEDRAL : 12.358 3384 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 4:128) REMARK 3 ORIGIN FOR THE GROUP (A): 16.7970 -4.4624 46.7206 REMARK 3 T TENSOR REMARK 3 T11: 0.3699 T22: 0.3285 REMARK 3 T33: 0.2739 T12: -0.0165 REMARK 3 T13: -0.0551 T23: 0.0783 REMARK 3 L TENSOR REMARK 3 L11: 2.9376 L22: 3.5589 REMARK 3 L33: 5.0570 L12: -0.2896 REMARK 3 L13: -0.6282 L23: 0.5019 REMARK 3 S TENSOR REMARK 3 S11: 0.0597 S12: -0.3685 S13: -0.1950 REMARK 3 S21: 0.5748 S22: -0.0023 S23: 0.1322 REMARK 3 S31: 0.1176 S32: -0.3815 S33: -0.0440 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 129:407) REMARK 3 ORIGIN FOR THE GROUP (A): 30.4172 8.6330 21.2089 REMARK 3 T TENSOR REMARK 3 T11: 0.1833 T22: 0.2398 REMARK 3 T33: 0.2654 T12: 0.0190 REMARK 3 T13: -0.0266 T23: -0.0252 REMARK 3 L TENSOR REMARK 3 L11: 0.9339 L22: 2.1525 REMARK 3 L33: 1.6779 L12: 0.1965 REMARK 3 L13: 0.1380 L23: 0.0006 REMARK 3 S TENSOR REMARK 3 S11: 0.0624 S12: 0.0981 S13: -0.1217 REMARK 3 S21: -0.1177 S22: -0.0057 S23: -0.3446 REMARK 3 S31: -0.0593 S32: 0.2713 S33: -0.0393 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 408:523) REMARK 3 ORIGIN FOR THE GROUP (A): 12.1435 -17.1378 4.7135 REMARK 3 T TENSOR REMARK 3 T11: 0.6160 T22: 0.2855 REMARK 3 T33: 0.3965 T12: 0.1190 REMARK 3 T13: -0.1777 T23: -0.0241 REMARK 3 L TENSOR REMARK 3 L11: 0.8445 L22: 1.8986 REMARK 3 L33: 1.6315 L12: 0.6979 REMARK 3 L13: -0.0889 L23: 1.2853 REMARK 3 S TENSOR REMARK 3 S11: 0.0666 S12: 0.0830 S13: -0.2586 REMARK 3 S21: -0.3226 S22: 0.0269 S23: -0.0106 REMARK 3 S31: 0.5332 S32: 0.1739 S33: -0.0536 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 524:645) REMARK 3 ORIGIN FOR THE GROUP (A): 14.7053 -8.4427 -12.4601 REMARK 3 T TENSOR REMARK 3 T11: 0.5382 T22: 0.3754 REMARK 3 T33: 0.3813 T12: 0.0682 REMARK 3 T13: -0.0763 T23: -0.0545 REMARK 3 L TENSOR REMARK 3 L11: 0.4656 L22: 3.2056 REMARK 3 L33: 1.3141 L12: -0.2772 REMARK 3 L13: -0.3032 L23: 0.2807 REMARK 3 S TENSOR REMARK 3 S11: 0.0297 S12: 0.1841 S13: 0.0167 REMARK 3 S21: -0.4580 S22: 0.1755 S23: -0.3947 REMARK 3 S31: 0.2260 S32: 0.1588 S33: -0.2025 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN A AND RESID 646:707) REMARK 3 ORIGIN FOR THE GROUP (A): 25.4485 9.4764 -25.0641 REMARK 3 T TENSOR REMARK 3 T11: 0.7004 T22: 0.8551 REMARK 3 T33: 0.5155 T12: 0.0442 REMARK 3 T13: 0.3173 T23: -0.1483 REMARK 3 L TENSOR REMARK 3 L11: 1.4088 L22: 1.2710 REMARK 3 L33: 1.5933 L12: -0.4500 REMARK 3 L13: -1.4093 L23: -0.0050 REMARK 3 S TENSOR REMARK 3 S11: 0.0662 S12: 0.6480 S13: -0.0614 REMARK 3 S21: -0.4577 S22: 0.2175 S23: -0.6864 REMARK 3 S31: -0.1443 S32: 1.0582 S33: -0.2840 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN A AND RESID 708:715) REMARK 3 ORIGIN FOR THE GROUP (A): 20.6159 7.7956 -15.6845 REMARK 3 T TENSOR REMARK 3 T11: 0.3189 T22: 0.5009 REMARK 3 T33: 0.6049 T12: 0.0288 REMARK 3 T13: 0.0696 T23: -0.0484 REMARK 3 L TENSOR REMARK 3 L11: 5.1093 L22: 8.4801 REMARK 3 L33: 8.6542 L12: -5.2093 REMARK 3 L13: 3.7015 L23: -1.8123 REMARK 3 S TENSOR REMARK 3 S11: -0.2253 S12: -0.6189 S13: -0.4428 REMARK 3 S21: 0.5315 S22: 0.2349 S23: -0.0787 REMARK 3 S31: 0.2154 S32: 0.6798 S33: 0.0247 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5MI7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 28-NOV-16. REMARK 100 THE DEPOSITION ID IS D_1200002123. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-APR-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9763 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 59272 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 100.620 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 4.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.16 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 2CHO REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.59 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.04 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 4% PEG 8K, 125MM IMIDAZOLE, 3% TMAO, REMARK 280 15% ETHYLENE GLYCOL, PH 8.0, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 97.59650 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 25.91150 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 97.59650 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 25.91150 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 760 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 30050 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -14.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -10 REMARK 465 GLY A -9 REMARK 465 SER A -8 REMARK 465 SER A -7 REMARK 465 HIS A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 GLN A 0 REMARK 465 TRP A 1 REMARK 465 ASN A 2 REMARK 465 VAL A 3 REMARK 465 SER A 597 REMARK 465 ASN A 598 REMARK 465 VAL A 599 REMARK 465 GLU A 600 REMARK 465 GLN A 601 REMARK 465 ILE A 602 REMARK 465 ALA A 619 REMARK 465 ASN A 620 REMARK 465 GLU A 621 REMARK 465 VAL A 622 REMARK 465 VAL A 623 REMARK 465 LYS A 624 REMARK 465 TRP A 625 REMARK 465 ALA A 626 REMARK 465 ALA A 627 REMARK 465 GLY A 628 REMARK 465 ASN A 629 REMARK 465 SER A 630 REMARK 465 VAL A 631 REMARK 465 GLY A 649 REMARK 465 LYS A 650 REMARK 465 ASP A 651 REMARK 465 ALA A 652 REMARK 465 PRO A 653 REMARK 465 SER A 654 REMARK 465 THR A 655 REMARK 465 TRP A 656 REMARK 465 GLY A 657 REMARK 465 ARG A 658 REMARK 465 LEU A 659 REMARK 465 VAL A 697 REMARK 465 SER A 698 REMARK 465 ASP A 699 REMARK 465 GLU A 700 REMARK 465 GLU A 701 REMARK 465 GLN A 702 REMARK 465 GLN A 703 REMARK 465 VAL A 704 REMARK 465 TYR A 705 REMARK 465 LEU A 706 REMARK 465 ARG A 707 REMARK 465 LYS A 716 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 17 104.11 -175.25 REMARK 500 SER A 51 -161.35 -105.80 REMARK 500 LYS A 53 28.75 -145.60 REMARK 500 SER A 172 -154.94 -129.72 REMARK 500 PHE A 265 -65.73 -136.88 REMARK 500 ASP A 271 35.88 -152.89 REMARK 500 ASN A 273 -83.07 -107.27 REMARK 500 ASP A 344 0.39 -66.98 REMARK 500 LEU A 411 67.44 -153.39 REMARK 500 ALA A 414 41.27 -149.75 REMARK 500 SER A 426 -34.61 -132.11 REMARK 500 LYS A 458 -155.06 -81.85 REMARK 500 ARG A 519 -101.30 75.36 REMARK 500 CYS A 550 -70.08 -120.13 REMARK 500 VAL A 560 -50.72 -123.62 REMARK 500 HIS A 583 39.38 -140.78 REMARK 500 ALA A 611 -126.11 59.16 REMARK 500 GLU A 642 -62.89 -103.41 REMARK 500 LYS A 676 -111.79 -129.72 REMARK 500 ALA A 682 142.95 -173.40 REMARK 500 PHE A 694 139.27 -173.81 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 803 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 32 O REMARK 620 2 GLU A 61 OE1 88.8 REMARK 620 3 ASP A 64 OD1 102.8 120.8 REMARK 620 4 ASP A 64 OD2 82.1 72.6 52.6 REMARK 620 5 HOH A 916 O 89.7 81.6 154.1 153.0 REMARK 620 6 HOH A1014 O 87.0 163.5 75.7 122.5 82.4 REMARK 620 7 HOH A1032 O 162.1 89.6 93.4 114.3 72.4 89.5 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OAN A 801 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 7NT A 802 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 803 DBREF 5MI7 A 2 716 UNP Q89ZI2 OGA_BACTN 23 737 SEQADV 5MI7 MET A -10 UNP Q89ZI2 INITIATING METHIONINE SEQADV 5MI7 GLY A -9 UNP Q89ZI2 EXPRESSION TAG SEQADV 5MI7 SER A -8 UNP Q89ZI2 EXPRESSION TAG SEQADV 5MI7 SER A -7 UNP Q89ZI2 EXPRESSION TAG SEQADV 5MI7 HIS A -6 UNP Q89ZI2 EXPRESSION TAG SEQADV 5MI7 HIS A -5 UNP Q89ZI2 EXPRESSION TAG SEQADV 5MI7 HIS A -4 UNP Q89ZI2 EXPRESSION TAG SEQADV 5MI7 HIS A -3 UNP Q89ZI2 EXPRESSION TAG SEQADV 5MI7 HIS A -2 UNP Q89ZI2 EXPRESSION TAG SEQADV 5MI7 HIS A -1 UNP Q89ZI2 EXPRESSION TAG SEQADV 5MI7 GLN A 0 UNP Q89ZI2 EXPRESSION TAG SEQADV 5MI7 TRP A 1 UNP Q89ZI2 EXPRESSION TAG SEQADV 5MI7 SER A 420 UNP Q89ZI2 CYS 441 ENGINEERED MUTATION SEQADV 5MI7 CYS A 550 UNP Q89ZI2 TYR 571 ENGINEERED MUTATION SEQADV 5MI7 SER A 654 UNP Q89ZI2 CYS 675 ENGINEERED MUTATION SEQRES 1 A 727 MET GLY SER SER HIS HIS HIS HIS HIS HIS GLN TRP ASN SEQRES 2 A 727 VAL SER LEU GLN PRO PRO PRO GLN GLN LEU ILE VAL GLN SEQRES 3 A 727 ASN LYS THR ILE ASP LEU PRO ALA VAL TYR GLN LEU ASN SEQRES 4 A 727 GLY GLY GLU GLU ALA ASN PRO HIS ALA VAL LYS VAL LEU SEQRES 5 A 727 LYS GLU LEU LEU SER GLY LYS GLN SER SER LYS LYS GLY SEQRES 6 A 727 MET LEU ILE SER ILE GLY GLU LYS GLY ASP LYS SER VAL SEQRES 7 A 727 ARG LYS TYR SER ARG GLN ILE PRO ASP HIS LYS GLU GLY SEQRES 8 A 727 TYR TYR LEU SER VAL ASN GLU LYS GLU ILE VAL LEU ALA SEQRES 9 A 727 GLY ASN ASP GLU ARG GLY THR TYR TYR ALA LEU GLN THR SEQRES 10 A 727 PHE ALA GLN LEU LEU LYS ASP GLY LYS LEU PRO GLU VAL SEQRES 11 A 727 GLU ILE LYS ASP TYR PRO SER VAL ARG TYR ARG GLY VAL SEQRES 12 A 727 VAL GLU GLY PHE TYR GLY THR PRO TRP SER HIS GLN ALA SEQRES 13 A 727 ARG LEU SER GLN LEU LYS PHE TYR GLY LYS ASN LYS MET SEQRES 14 A 727 ASN THR TYR ILE TYR GLY PRO LYS ASP ASP PRO TYR HIS SEQRES 15 A 727 SER ALA PRO ASN TRP ARG LEU PRO TYR PRO ASP LYS GLU SEQRES 16 A 727 ALA ALA GLN LEU GLN GLU LEU VAL ALA VAL ALA ASN GLU SEQRES 17 A 727 ASN GLU VAL ASP PHE VAL TRP ALA ILE HIS PRO GLY GLN SEQRES 18 A 727 ASP ILE LYS TRP ASN LYS GLU ASP ARG ASP LEU LEU LEU SEQRES 19 A 727 ALA LYS PHE GLU LYS MET TYR GLN LEU GLY VAL ARG SER SEQRES 20 A 727 PHE ALA VAL PHE PHE ASP ASP ILE SER GLY GLU GLY THR SEQRES 21 A 727 ASN PRO GLN LYS GLN ALA GLU LEU LEU ASN TYR ILE ASP SEQRES 22 A 727 GLU LYS PHE ALA GLN VAL LYS PRO ASP ILE ASN GLN LEU SEQRES 23 A 727 VAL MET CYS PRO THR GLU TYR ASN LYS SER TRP SER ASN SEQRES 24 A 727 PRO ASN GLY ASN TYR LEU THR THR LEU GLY ASP LYS LEU SEQRES 25 A 727 ASN PRO SER ILE GLN ILE MET TRP THR GLY ASP ARG VAL SEQRES 26 A 727 ILE SER ASP ILE THR ARG ASP GLY ILE SER TRP ILE ASN SEQRES 27 A 727 GLU ARG ILE LYS ARG PRO ALA TYR ILE TRP TRP ASN PHE SEQRES 28 A 727 PRO VAL SER ASP TYR VAL ARG ASP HIS LEU LEU LEU GLY SEQRES 29 A 727 PRO VAL TYR GLY ASN ASP THR THR ILE ALA LYS GLU MET SEQRES 30 A 727 SER GLY PHE VAL THR ASN PRO MET GLU HIS ALA GLU SER SEQRES 31 A 727 SER LYS ILE ALA ILE TYR SER VAL ALA SER TYR ALA TRP SEQRES 32 A 727 ASN PRO ALA LYS TYR ASP THR TRP GLN THR TRP LYS ASP SEQRES 33 A 727 ALA ILE ARG THR ILE LEU PRO SER ALA ALA GLU GLU LEU SEQRES 34 A 727 GLU SER PHE ALA MET HIS ASN SER ASP LEU GLY PRO ASN SEQRES 35 A 727 GLY HIS GLY TYR ARG ARG GLU GLU SER MET ASP ILE GLN SEQRES 36 A 727 PRO ALA ALA GLU ARG PHE LEU LYS ALA PHE LYS GLU GLY SEQRES 37 A 727 LYS ASN TYR ASP LYS ALA ASP PHE GLU THR LEU GLN TYR SEQRES 38 A 727 THR PHE GLU ARG MET LYS GLU SER ALA ASP ILE LEU LEU SEQRES 39 A 727 MET ASN THR GLU ASN LYS PRO LEU ILE VAL GLU ILE THR SEQRES 40 A 727 PRO TRP VAL HIS GLN PHE LYS LEU THR ALA GLU MET GLY SEQRES 41 A 727 GLU GLU VAL LEU LYS MET VAL GLU GLY ARG ASN GLU SER SEQRES 42 A 727 TYR PHE LEU ARG LYS TYR ASN HIS VAL LYS ALA LEU GLN SEQRES 43 A 727 GLN GLN MET PHE TYR ILE ASP GLN THR SER ASN GLN ASN SEQRES 44 A 727 PRO CYS GLN PRO GLY VAL LYS THR ALA THR ARG VAL ILE SEQRES 45 A 727 LYS PRO LEU ILE ASP ARG THR PHE ALA THR VAL VAL LYS SEQRES 46 A 727 PHE PHE ASN GLN LYS PHE ASN ALA HIS LEU ASP ALA THR SEQRES 47 A 727 THR ASP TYR MET PRO HIS LYS MET ILE SER ASN VAL GLU SEQRES 48 A 727 GLN ILE LYS ASN LEU PRO LEU GLN VAL LYS ALA ASN ARG SEQRES 49 A 727 VAL LEU ILE SER PRO ALA ASN GLU VAL VAL LYS TRP ALA SEQRES 50 A 727 ALA GLY ASN SER VAL GLU ILE GLU LEU ASP ALA ILE TYR SEQRES 51 A 727 PRO GLY GLU ASN ILE GLN ILE ASN PHE GLY LYS ASP ALA SEQRES 52 A 727 PRO SER THR TRP GLY ARG LEU GLU ILE SER THR ASP GLY SEQRES 53 A 727 LYS GLU TRP LYS THR VAL ASP LEU LYS GLN LYS GLU SER SEQRES 54 A 727 ARG LEU SER ALA GLY LEU GLN LYS ALA PRO VAL LYS PHE SEQRES 55 A 727 VAL ARG PHE THR ASN VAL SER ASP GLU GLU GLN GLN VAL SEQRES 56 A 727 TYR LEU ARG GLN PHE VAL LEU THR ILE GLU LYS LYS HET OAN A 801 44 HET 7NT A 802 33 HET CA A 803 1 HETNAM OAN O-(2-ACETAMIDO-2-DEOXY D-GLUCOPYRANOSYLIDENE) AMINO-N- HETNAM 2 OAN PHENYLCARBAMATE HETNAM 7NT ~{N}-(4-MORPHOLIN-4-YLTHIENO[2,3-D]PYRIMIDIN-2-YL) HETNAM 2 7NT PROPANAMIDE HETNAM CA CALCIUM ION HETSYN OAN PUGNAC FORMUL 2 OAN C15 H19 N3 O7 FORMUL 3 7NT C13 H16 N4 O2 S FORMUL 4 CA CA 2+ FORMUL 5 HOH *141(H2 O) HELIX 1 AA1 ASN A 34 SER A 46 1 13 HELIX 2 AA2 ASP A 64 ILE A 74 5 11 HELIX 3 AA3 ASP A 96 LEU A 111 1 16 HELIX 4 AA4 SER A 142 ASN A 156 1 15 HELIX 5 AA5 PRO A 174 LEU A 178 5 5 HELIX 6 AA6 PRO A 181 ASN A 198 1 18 HELIX 7 AA7 ASN A 215 LEU A 232 1 18 HELIX 8 AA8 SER A 245 THR A 249 5 5 HELIX 9 AA9 ASN A 250 PHE A 265 1 16 HELIX 10 AB1 ASN A 292 LEU A 301 1 10 HELIX 11 AB2 THR A 319 LYS A 331 1 13 HELIX 12 AB3 ILE A 362 LYS A 364 5 3 HELIX 13 AB4 SER A 380 ASN A 393 1 14 HELIX 14 AB5 PRO A 394 TYR A 397 5 4 HELIX 15 AB6 ASP A 398 LEU A 411 1 14 HELIX 16 AB7 ALA A 414 HIS A 424 1 11 HELIX 17 AB8 ILE A 443 GLU A 456 1 14 HELIX 18 AB9 ASP A 461 MET A 484 1 24 HELIX 19 AC1 ASN A 488 GLY A 518 1 31 HELIX 20 AC2 ASN A 520 SER A 545 1 26 HELIX 21 AC3 VAL A 560 ASN A 581 1 22 SHEET 1 AA1 7 GLN A 11 ASP A 20 0 SHEET 2 AA1 7 LYS A 115 ASP A 123 -1 O LEU A 116 N ILE A 19 SHEET 3 AA1 7 TYR A 81 VAL A 85 -1 N LEU A 83 O ILE A 121 SHEET 4 AA1 7 GLU A 89 GLY A 94 -1 O ALA A 93 N TYR A 82 SHEET 5 AA1 7 MET A 55 GLU A 61 1 N SER A 58 O LEU A 92 SHEET 6 AA1 7 VAL A 24 ASN A 28 1 N GLN A 26 O MET A 55 SHEET 7 AA1 7 GLN A 49 SER A 50 1 O GLN A 49 N TYR A 25 SHEET 1 AA2 9 TYR A 129 GLU A 134 0 SHEET 2 AA2 9 THR A 160 TYR A 163 1 O ILE A 162 N VAL A 132 SHEET 3 AA2 9 ASP A 201 ILE A 206 1 O VAL A 203 N TYR A 163 SHEET 4 AA2 9 SER A 236 PHE A 240 1 O PHE A 240 N ILE A 206 SHEET 5 AA2 9 LEU A 275 CYS A 278 1 O CYS A 278 N VAL A 239 SHEET 6 AA2 9 GLN A 306 TRP A 309 1 O GLN A 306 N LEU A 275 SHEET 7 AA2 9 ALA A 334 TRP A 338 1 O TRP A 337 N TRP A 309 SHEET 8 AA2 9 MET A 366 THR A 371 1 O VAL A 370 N TRP A 338 SHEET 9 AA2 9 TYR A 129 GLU A 134 1 N VAL A 133 O THR A 371 SHEET 1 AA3 5 LYS A 594 MET A 595 0 SHEET 2 AA3 5 ILE A 633 ILE A 646 -1 O GLU A 634 N LYS A 594 SHEET 3 AA3 5 PRO A 688 VAL A 692 -1 O LYS A 690 N LEU A 635 SHEET 4 AA3 5 ILE A 661 SER A 662 -1 N SER A 662 O PHE A 691 SHEET 5 AA3 5 TRP A 668 LYS A 669 -1 O LYS A 669 N ILE A 661 SHEET 1 AA4 5 LEU A 607 LYS A 610 0 SHEET 2 AA4 5 ARG A 613 ILE A 616 -1 O LEU A 615 N GLN A 608 SHEET 3 AA4 5 PHE A 709 ILE A 713 -1 O LEU A 711 N VAL A 614 SHEET 4 AA4 5 ILE A 633 ILE A 646 -1 N GLU A 642 O THR A 712 SHEET 5 AA4 5 LEU A 680 GLY A 683 -1 O LEU A 680 N ILE A 646 LINK SG CYS A 550 C01 7NT A 802 1555 1555 1.77 LINK O GLU A 32 CA CA A 803 1555 1555 2.33 LINK OE1 GLU A 61 CA CA A 803 1555 1555 2.39 LINK OD1 ASP A 64 CA CA A 803 1555 1555 2.48 LINK OD2 ASP A 64 CA CA A 803 1555 1555 2.46 LINK CA CA A 803 O HOH A 916 1555 1555 2.48 LINK CA CA A 803 O HOH A1014 1555 1555 2.37 LINK CA CA A 803 O HOH A1032 1555 1555 2.44 CISPEP 1 GLN A 6 PRO A 7 0 -10.18 CISPEP 2 ALA A 173 PRO A 174 0 -9.12 CISPEP 3 PHE A 340 PRO A 341 0 5.51 SITE 1 AC1 15 GLY A 135 PHE A 136 TYR A 137 LYS A 166 SITE 2 AC1 15 ASP A 242 ASP A 243 TYR A 282 TRP A 286 SITE 3 AC1 15 VAL A 314 TRP A 337 ASN A 339 ASP A 344 SITE 4 AC1 15 ASN A 372 7NT A 802 HOH A 906 SITE 1 AC2 6 TYR A 137 ASP A 344 ARG A 347 PRO A 549 SITE 2 AC2 6 CYS A 550 OAN A 801 SITE 1 AC3 6 GLU A 32 GLU A 61 ASP A 64 HOH A 916 SITE 2 AC3 6 HOH A1014 HOH A1032 CRYST1 195.193 51.823 108.234 90.00 111.61 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005123 0.000000 0.002030 0.00000 SCALE2 0.000000 0.019296 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009938 0.00000