HEADER OXIDOREDUCTASE 28-NOV-16 5MIN TITLE APO FORM OF THE SOLUBLE PQQ-DEPENDENT GLUCOSE DEHYDROGENASE FROM TITLE 2 ACINETOBACTER CALCOACETICUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: QUINOPROTEIN GLUCOSE DEHYDROGENASE B; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: GLUCOSE DEHYDROGENASE B [PYRROLOQUINOLINE-QUINONE],SOLUBLE COMPND 5 GLUCOSE DEHYDROGENASE,S-GDH; COMPND 6 EC: 1.1.5.2; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ACINETOBACTER CALCOACETICUS; SOURCE 3 ORGANISM_TAXID: 471; SOURCE 4 GENE: GDHB; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PP2418 KEYWDS DEHYDROGENASE, APO FORM, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR C.STINES-CHAUMEIL,F.MAVRE,B.LIMOGES,B.KAUFFMANN,N.MANO REVDAT 3 17-JAN-24 5MIN 1 LINK REVDAT 2 16-OCT-19 5MIN 1 REMARK REVDAT 1 20-DEC-17 5MIN 0 JRNL AUTH C.STINES-CHAUMEIL,F.MAVRE,B.LIMOGES,B.KAUFFMANN,N.MANO JRNL TITL APO FORM OF THE SOLUBLE PQQ-DEPENDENT GLUCOSE DEHYDROGENASE JRNL TITL 2 FROM ACINETOBACTER CALCOACETICUS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.76 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER-TNT 2.10.2 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SMART,VONRHEIN,WOMACK, REMARK 3 : MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.76 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.73 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 91.7 REMARK 3 NUMBER OF REFLECTIONS : 83379 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.180 REMARK 3 R VALUE (WORKING SET) : 0.178 REMARK 3 FREE R VALUE : 0.214 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.960 REMARK 3 FREE R VALUE TEST SET COUNT : 4137 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 1.76 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 1.81 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 72.20 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 4818 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2816 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 4572 REMARK 3 BIN R VALUE (WORKING SET) : 0.2794 REMARK 3 BIN FREE R VALUE : 0.3232 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.11 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 246 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7073 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 7 REMARK 3 SOLVENT ATOMS : 1099 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.23 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.64390 REMARK 3 B22 (A**2) : -1.83440 REMARK 3 B33 (A**2) : 1.19050 REMARK 3 B12 (A**2) : -1.28620 REMARK 3 B13 (A**2) : 0.42210 REMARK 3 B23 (A**2) : 0.21700 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.207 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.138 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.126 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.130 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.122 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.958 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.941 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 7329 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 10002 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 2478 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 199 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 1056 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 7329 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : 0 ; 5.000 ; SEMIHARMONIC REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 955 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 9205 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.06 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 4.02 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 16.14 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|* } REMARK 3 ORIGIN FOR THE GROUP (A): 20.0264 19.3293 75.8030 REMARK 3 T TENSOR REMARK 3 T11: -0.0380 T22: -0.0368 REMARK 3 T33: -0.0295 T12: -0.0112 REMARK 3 T13: -0.0042 T23: -0.0061 REMARK 3 L TENSOR REMARK 3 L11: 0.3235 L22: 0.2893 REMARK 3 L33: 0.6636 L12: -0.1349 REMARK 3 L13: 0.0339 L23: 0.1438 REMARK 3 S TENSOR REMARK 3 S11: 0.0116 S12: 0.0836 S13: 0.0117 REMARK 3 S21: -0.0219 S22: -0.0307 S23: 0.0002 REMARK 3 S31: 0.0072 S32: -0.0223 S33: 0.0191 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { B|* } REMARK 3 ORIGIN FOR THE GROUP (A): 28.7616 2.8951 112.0442 REMARK 3 T TENSOR REMARK 3 T11: -0.0445 T22: -0.0297 REMARK 3 T33: -0.0385 T12: 0.0061 REMARK 3 T13: -0.0202 T23: -0.0172 REMARK 3 L TENSOR REMARK 3 L11: 0.3214 L22: 0.4712 REMARK 3 L33: 0.5498 L12: -0.0566 REMARK 3 L13: 0.0144 L23: -0.0487 REMARK 3 S TENSOR REMARK 3 S11: -0.0286 S12: -0.0691 S13: -0.0109 REMARK 3 S21: 0.0589 S22: 0.0081 S23: -0.0100 REMARK 3 S31: -0.0023 S32: -0.0253 S33: 0.0205 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5MIN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 28-NOV-16. REMARK 100 THE DEPOSITION ID IS D_1200002519. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-DEC-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU FR-X REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54187 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : OSMIC VARIMAX HF REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 200K REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XSCALE REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 83379 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.760 REMARK 200 RESOLUTION RANGE LOW (A) : 25.730 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 91.6 REMARK 200 DATA REDUNDANCY : 3.070 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.4200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER, PHASER REMARK 200 STARTING MODEL: 1C9U REMARK 200 REMARK 200 REMARK: PRISM REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.92 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.36 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 4000 (12%) 100 MM TRIS PH 8.5, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2960 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 34490 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -83.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 453 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 14 62.63 61.64 REMARK 500 HIS A 30 -60.55 -126.53 REMARK 500 LEU A 80 -81.22 -116.42 REMARK 500 PHE A 82 116.88 -160.42 REMARK 500 ASP A 87 61.79 -112.72 REMARK 500 ASN A 91 81.59 -154.65 REMARK 500 SER A 146 -99.87 68.59 REMARK 500 LEU A 169 -120.45 45.53 REMARK 500 SER A 220 -164.24 -113.79 REMARK 500 ARG A 228 -81.73 -97.41 REMARK 500 PRO A 248 -104.50 -79.38 REMARK 500 ASN A 334 57.09 -118.53 REMARK 500 MET A 341 55.91 -90.65 REMARK 500 ASP A 395 -144.53 57.76 REMARK 500 HIS B 30 -64.16 -123.90 REMARK 500 LEU B 80 -83.99 -119.00 REMARK 500 PHE B 82 116.80 -162.52 REMARK 500 ASP B 87 65.02 -112.99 REMARK 500 ASP B 87 65.77 -112.99 REMARK 500 SER B 146 -96.89 67.66 REMARK 500 LEU B 169 -126.04 43.72 REMARK 500 SER B 220 -163.53 -123.62 REMARK 500 ARG B 228 -77.85 -96.79 REMARK 500 PRO B 248 -107.51 -78.24 REMARK 500 MET B 341 52.15 -97.13 REMARK 500 ASP B 395 -148.62 60.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1151 DISTANCE = 5.92 ANGSTROMS REMARK 525 HOH A1152 DISTANCE = 6.63 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 501 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 253 OE1 REMARK 620 2 GLU A 253 OE2 53.1 REMARK 620 3 TYR A 263 O 147.8 158.6 REMARK 620 4 HOH A 613 O 132.1 81.0 77.7 REMARK 620 5 HOH A 651 O 105.1 79.6 93.4 75.0 REMARK 620 6 HOH A 758 O 80.3 120.7 77.1 143.1 80.0 REMARK 620 7 HOH A 871 O 79.1 94.7 88.2 93.8 168.0 111.9 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 502 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA A 269 O REMARK 620 2 TYR A 271 O 89.5 REMARK 620 3 ASP A 273 OD1 156.3 85.9 REMARK 620 4 GLU A 309 OE1 127.8 83.6 74.7 REMARK 620 5 GLU A 309 OE2 76.8 96.9 126.8 53.1 REMARK 620 6 HOH A 688 O 78.6 84.7 77.8 150.8 155.3 REMARK 620 7 HOH A 753 O 83.9 166.6 95.5 109.6 93.0 82.5 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 503 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 684 O REMARK 620 2 HOH A 930 O 112.8 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 503 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 779 O REMARK 620 2 HOH B 662 O 76.7 REMARK 620 3 HOH B 759 O 165.4 89.8 REMARK 620 4 HOH B 810 O 63.1 83.9 121.9 REMARK 620 5 HOH B 952 O 93.0 167.0 101.1 84.4 REMARK 620 6 HOH B1057 O 97.3 104.8 80.5 156.5 84.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 501 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 253 OE1 REMARK 620 2 GLU B 253 OE2 53.1 REMARK 620 3 TYR B 263 O 147.3 158.7 REMARK 620 4 HOH B 629 O 132.4 81.7 77.0 REMARK 620 5 HOH B 634 O 105.9 80.1 93.9 76.0 REMARK 620 6 HOH B 723 O 81.1 120.6 77.6 142.5 78.8 REMARK 620 7 HOH B 880 O 77.9 92.6 88.9 91.9 166.6 114.6 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 502 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA B 269 O REMARK 620 2 TYR B 271 O 90.2 REMARK 620 3 ASP B 273 OD1 156.6 85.7 REMARK 620 4 GLU B 309 OE1 127.8 80.8 74.3 REMARK 620 5 GLU B 309 OE2 78.4 97.9 125.0 52.7 REMARK 620 6 HOH B 638 O 81.0 83.6 75.7 147.0 159.3 REMARK 620 7 HOH B 707 O 84.5 165.1 93.6 113.3 94.7 81.8 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA B 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA B 503 DBREF 5MIN A 1 453 UNP P13650 DHGB_ACICA 25 477 DBREF 5MIN B 1 453 UNP P13650 DHGB_ACICA 25 477 SEQADV 5MIN ALA A 109 UNP P13650 GLU 133 CONFLICT SEQADV 5MIN ALA B 109 UNP P13650 GLU 133 CONFLICT SEQRES 1 A 453 ASP VAL PRO LEU THR PRO SER GLN PHE ALA LYS ALA LYS SEQRES 2 A 453 SER GLU ASN PHE ASP LYS LYS VAL ILE LEU SER ASN LEU SEQRES 3 A 453 ASN LYS PRO HIS ALA LEU LEU TRP GLY PRO ASP ASN GLN SEQRES 4 A 453 ILE TRP LEU THR GLU ARG ALA THR GLY LYS ILE LEU ARG SEQRES 5 A 453 VAL ASN PRO GLU SER GLY SER VAL LYS THR VAL PHE GLN SEQRES 6 A 453 VAL PRO GLU ILE VAL ASN ASP ALA ASP GLY GLN ASN GLY SEQRES 7 A 453 LEU LEU GLY PHE ALA PHE HIS PRO ASP PHE LYS ASN ASN SEQRES 8 A 453 PRO TYR ILE TYR ILE SER GLY THR PHE LYS ASN PRO LYS SEQRES 9 A 453 SER THR ASP LYS ALA LEU PRO ASN GLN THR ILE ILE ARG SEQRES 10 A 453 ARG TYR THR TYR ASN LYS SER THR ASP THR LEU GLU LYS SEQRES 11 A 453 PRO VAL ASP LEU LEU ALA GLY LEU PRO SER SER LYS ASP SEQRES 12 A 453 HIS GLN SER GLY ARG LEU VAL ILE GLY PRO ASP GLN LYS SEQRES 13 A 453 ILE TYR TYR THR ILE GLY ASP GLN GLY ARG ASN GLN LEU SEQRES 14 A 453 ALA TYR LEU PHE LEU PRO ASN GLN ALA GLN HIS THR PRO SEQRES 15 A 453 THR GLN GLN GLU LEU ASN GLY LYS ASP TYR HIS THR TYR SEQRES 16 A 453 MET GLY LYS VAL LEU ARG LEU ASN LEU ASP GLY SER ILE SEQRES 17 A 453 PRO LYS ASP ASN PRO SER PHE ASN GLY VAL VAL SER HIS SEQRES 18 A 453 ILE TYR THR LEU GLY HIS ARG ASN PRO GLN GLY LEU ALA SEQRES 19 A 453 PHE THR PRO ASN GLY LYS LEU LEU GLN SER GLU GLN GLY SEQRES 20 A 453 PRO ASN SER ASP ASP GLU ILE ASN LEU ILE VAL LYS GLY SEQRES 21 A 453 GLY ASN TYR GLY TRP PRO ASN VAL ALA GLY TYR LYS ASP SEQRES 22 A 453 ASP SER GLY TYR ALA TYR ALA ASN TYR SER ALA ALA ALA SEQRES 23 A 453 ASN LYS SER ILE LYS ASP LEU ALA GLN ASN GLY VAL LYS SEQRES 24 A 453 VAL ALA ALA GLY VAL PRO VAL THR LYS GLU SER GLU TRP SEQRES 25 A 453 THR GLY LYS ASN PHE VAL PRO PRO LEU LYS THR LEU TYR SEQRES 26 A 453 THR VAL GLN ASP THR TYR ASN TYR ASN ASP PRO THR CYS SEQRES 27 A 453 GLY GLU MET THR TYR ILE CYS TRP PRO THR VAL ALA PRO SEQRES 28 A 453 SER SER ALA TYR VAL TYR LYS GLY GLY LYS LYS ALA ILE SEQRES 29 A 453 THR GLY TRP GLU ASN THR LEU LEU VAL PRO SER LEU LYS SEQRES 30 A 453 ARG GLY VAL ILE PHE ARG ILE LYS LEU ASP PRO THR TYR SEQRES 31 A 453 SER THR THR TYR ASP ASP ALA VAL PRO MET PHE LYS SER SEQRES 32 A 453 ASN ASN ARG TYR ARG ASP VAL ILE ALA SER PRO ASP GLY SEQRES 33 A 453 ASN VAL LEU TYR VAL LEU THR ASP THR ALA GLY ASN VAL SEQRES 34 A 453 GLN LYS ASP ASP GLY SER VAL THR ASN THR LEU GLU ASN SEQRES 35 A 453 PRO GLY SER LEU ILE LYS PHE THR TYR LYS ALA SEQRES 1 B 453 ASP VAL PRO LEU THR PRO SER GLN PHE ALA LYS ALA LYS SEQRES 2 B 453 SER GLU ASN PHE ASP LYS LYS VAL ILE LEU SER ASN LEU SEQRES 3 B 453 ASN LYS PRO HIS ALA LEU LEU TRP GLY PRO ASP ASN GLN SEQRES 4 B 453 ILE TRP LEU THR GLU ARG ALA THR GLY LYS ILE LEU ARG SEQRES 5 B 453 VAL ASN PRO GLU SER GLY SER VAL LYS THR VAL PHE GLN SEQRES 6 B 453 VAL PRO GLU ILE VAL ASN ASP ALA ASP GLY GLN ASN GLY SEQRES 7 B 453 LEU LEU GLY PHE ALA PHE HIS PRO ASP PHE LYS ASN ASN SEQRES 8 B 453 PRO TYR ILE TYR ILE SER GLY THR PHE LYS ASN PRO LYS SEQRES 9 B 453 SER THR ASP LYS ALA LEU PRO ASN GLN THR ILE ILE ARG SEQRES 10 B 453 ARG TYR THR TYR ASN LYS SER THR ASP THR LEU GLU LYS SEQRES 11 B 453 PRO VAL ASP LEU LEU ALA GLY LEU PRO SER SER LYS ASP SEQRES 12 B 453 HIS GLN SER GLY ARG LEU VAL ILE GLY PRO ASP GLN LYS SEQRES 13 B 453 ILE TYR TYR THR ILE GLY ASP GLN GLY ARG ASN GLN LEU SEQRES 14 B 453 ALA TYR LEU PHE LEU PRO ASN GLN ALA GLN HIS THR PRO SEQRES 15 B 453 THR GLN GLN GLU LEU ASN GLY LYS ASP TYR HIS THR TYR SEQRES 16 B 453 MET GLY LYS VAL LEU ARG LEU ASN LEU ASP GLY SER ILE SEQRES 17 B 453 PRO LYS ASP ASN PRO SER PHE ASN GLY VAL VAL SER HIS SEQRES 18 B 453 ILE TYR THR LEU GLY HIS ARG ASN PRO GLN GLY LEU ALA SEQRES 19 B 453 PHE THR PRO ASN GLY LYS LEU LEU GLN SER GLU GLN GLY SEQRES 20 B 453 PRO ASN SER ASP ASP GLU ILE ASN LEU ILE VAL LYS GLY SEQRES 21 B 453 GLY ASN TYR GLY TRP PRO ASN VAL ALA GLY TYR LYS ASP SEQRES 22 B 453 ASP SER GLY TYR ALA TYR ALA ASN TYR SER ALA ALA ALA SEQRES 23 B 453 ASN LYS SER ILE LYS ASP LEU ALA GLN ASN GLY VAL LYS SEQRES 24 B 453 VAL ALA ALA GLY VAL PRO VAL THR LYS GLU SER GLU TRP SEQRES 25 B 453 THR GLY LYS ASN PHE VAL PRO PRO LEU LYS THR LEU TYR SEQRES 26 B 453 THR VAL GLN ASP THR TYR ASN TYR ASN ASP PRO THR CYS SEQRES 27 B 453 GLY GLU MET THR TYR ILE CYS TRP PRO THR VAL ALA PRO SEQRES 28 B 453 SER SER ALA TYR VAL TYR LYS GLY GLY LYS LYS ALA ILE SEQRES 29 B 453 THR GLY TRP GLU ASN THR LEU LEU VAL PRO SER LEU LYS SEQRES 30 B 453 ARG GLY VAL ILE PHE ARG ILE LYS LEU ASP PRO THR TYR SEQRES 31 B 453 SER THR THR TYR ASP ASP ALA VAL PRO MET PHE LYS SER SEQRES 32 B 453 ASN ASN ARG TYR ARG ASP VAL ILE ALA SER PRO ASP GLY SEQRES 33 B 453 ASN VAL LEU TYR VAL LEU THR ASP THR ALA GLY ASN VAL SEQRES 34 B 453 GLN LYS ASP ASP GLY SER VAL THR ASN THR LEU GLU ASN SEQRES 35 B 453 PRO GLY SER LEU ILE LYS PHE THR TYR LYS ALA HET CA A 501 1 HET CA A 502 1 HET CA A 503 1 HET CL A 504 1 HET CA B 501 1 HET CA B 502 1 HET CA B 503 1 HETNAM CA CALCIUM ION HETNAM CL CHLORIDE ION FORMUL 3 CA 6(CA 2+) FORMUL 6 CL CL 1- FORMUL 10 HOH *1099(H2 O) HELIX 1 AA1 THR A 5 LYS A 11 1 7 HELIX 2 AA2 GLN A 168 LEU A 172 5 5 HELIX 3 AA3 THR A 183 GLY A 189 1 7 HELIX 4 AA4 TYR A 282 ALA A 285 5 4 HELIX 5 AA5 LYS A 308 TRP A 312 5 5 HELIX 6 AA6 ASP A 335 GLY A 339 5 5 HELIX 7 AA7 MET A 341 TRP A 346 5 6 HELIX 8 AA8 THR B 5 ALA B 12 1 8 HELIX 9 AA9 GLN B 168 LEU B 172 5 5 HELIX 10 AB1 THR B 183 GLY B 189 1 7 HELIX 11 AB2 TYR B 282 ALA B 285 5 4 HELIX 12 AB3 LYS B 308 TRP B 312 5 5 HELIX 13 AB4 ASP B 335 GLY B 339 5 5 HELIX 14 AB5 MET B 341 TRP B 346 5 6 SHEET 1 AA1 4 PHE A 17 LEU A 23 0 SHEET 2 AA1 4 LEU A 446 TYR A 451 -1 O LYS A 448 N LYS A 20 SHEET 3 AA1 4 VAL A 418 THR A 423 -1 N VAL A 421 O ILE A 447 SHEET 4 AA1 4 TYR A 407 ALA A 412 -1 N ARG A 408 O LEU A 422 SHEET 1 AA2 4 PRO A 29 TRP A 34 0 SHEET 2 AA2 4 ILE A 40 GLU A 44 -1 O TRP A 41 N LEU A 33 SHEET 3 AA2 4 LYS A 49 VAL A 53 -1 O LEU A 51 N LEU A 42 SHEET 4 AA2 4 VAL A 60 GLN A 65 -1 O PHE A 64 N ILE A 50 SHEET 1 AA3 4 LEU A 79 PHE A 84 0 SHEET 2 AA3 4 TYR A 93 LYS A 101 -1 O TYR A 95 N ALA A 83 SHEET 3 AA3 4 ASN A 112 ASN A 122 -1 O ARG A 117 N ILE A 96 SHEET 4 AA3 4 THR A 127 LEU A 138 -1 O LEU A 134 N ILE A 116 SHEET 1 AA4 4 SER A 146 ILE A 151 0 SHEET 2 AA4 4 ILE A 157 ILE A 161 -1 O TYR A 158 N VAL A 150 SHEET 3 AA4 4 LYS A 198 LEU A 202 -1 O LEU A 200 N TYR A 159 SHEET 4 AA4 4 ILE A 222 LEU A 225 -1 O TYR A 223 N VAL A 199 SHEET 1 AA5 4 ASN A 229 PHE A 235 0 SHEET 2 AA5 4 LEU A 241 GLN A 246 -1 O LEU A 242 N ALA A 234 SHEET 3 AA5 4 ASP A 252 ILE A 257 -1 O ILE A 257 N LEU A 241 SHEET 4 AA5 4 LYS A 322 LEU A 324 -1 O LEU A 324 N ASP A 252 SHEET 1 AA6 2 TYR A 279 ALA A 280 0 SHEET 2 AA6 2 VAL A 306 THR A 307 -1 O THR A 307 N TYR A 279 SHEET 1 AA7 4 TYR A 355 VAL A 356 0 SHEET 2 AA7 4 THR A 370 PRO A 374 -1 O LEU A 372 N TYR A 355 SHEET 3 AA7 4 ILE A 381 LEU A 386 -1 O PHE A 382 N VAL A 373 SHEET 4 AA7 4 THR A 393 MET A 400 -1 O TYR A 394 N LYS A 385 SHEET 1 AA8 2 VAL A 429 GLN A 430 0 SHEET 2 AA8 2 VAL A 436 THR A 437 -1 O THR A 437 N VAL A 429 SHEET 1 AA9 4 PHE B 17 LEU B 23 0 SHEET 2 AA9 4 LEU B 446 TYR B 451 -1 O LYS B 448 N LYS B 20 SHEET 3 AA9 4 VAL B 418 THR B 423 -1 N LEU B 419 O PHE B 449 SHEET 4 AA9 4 TYR B 407 ALA B 412 -1 N ARG B 408 O LEU B 422 SHEET 1 AB1 4 PRO B 29 TRP B 34 0 SHEET 2 AB1 4 ILE B 40 GLU B 44 -1 O TRP B 41 N LEU B 33 SHEET 3 AB1 4 LYS B 49 VAL B 53 -1 O VAL B 53 N ILE B 40 SHEET 4 AB1 4 VAL B 60 GLN B 65 -1 O PHE B 64 N ILE B 50 SHEET 1 AB2 4 LEU B 79 PHE B 84 0 SHEET 2 AB2 4 TYR B 93 LYS B 101 -1 O TYR B 95 N ALA B 83 SHEET 3 AB2 4 ASN B 112 ASN B 122 -1 O ARG B 117 N ILE B 96 SHEET 4 AB2 4 THR B 127 LEU B 138 -1 O GLU B 129 N THR B 120 SHEET 1 AB3 4 SER B 146 ILE B 151 0 SHEET 2 AB3 4 ILE B 157 ILE B 161 -1 O TYR B 158 N VAL B 150 SHEET 3 AB3 4 LYS B 198 LEU B 202 -1 O LEU B 200 N TYR B 159 SHEET 4 AB3 4 ILE B 222 LEU B 225 -1 O TYR B 223 N VAL B 199 SHEET 1 AB4 2 SER B 214 PHE B 215 0 SHEET 2 AB4 2 VAL B 218 VAL B 219 -1 O VAL B 218 N PHE B 215 SHEET 1 AB5 4 ASN B 229 PHE B 235 0 SHEET 2 AB5 4 LEU B 241 GLN B 246 -1 O LEU B 242 N ALA B 234 SHEET 3 AB5 4 ASP B 252 ILE B 257 -1 O ILE B 257 N LEU B 241 SHEET 4 AB5 4 LYS B 322 LEU B 324 -1 O LEU B 324 N ASP B 252 SHEET 1 AB6 2 TYR B 279 ALA B 280 0 SHEET 2 AB6 2 VAL B 306 THR B 307 -1 O THR B 307 N TYR B 279 SHEET 1 AB7 4 TYR B 355 VAL B 356 0 SHEET 2 AB7 4 THR B 370 PRO B 374 -1 O LEU B 372 N TYR B 355 SHEET 3 AB7 4 ILE B 381 LEU B 386 -1 O PHE B 382 N VAL B 373 SHEET 4 AB7 4 THR B 393 MET B 400 -1 O VAL B 398 N ARG B 383 SHEET 1 AB8 2 VAL B 429 GLN B 430 0 SHEET 2 AB8 2 VAL B 436 THR B 437 -1 O THR B 437 N VAL B 429 SSBOND 1 CYS A 338 CYS A 345 1555 1555 2.03 SSBOND 2 CYS B 338 CYS B 345 1555 1555 2.03 LINK OE1 GLU A 253 CA CA A 501 1555 1555 2.49 LINK OE2 GLU A 253 CA CA A 501 1555 1555 2.42 LINK O TYR A 263 CA CA A 501 1555 1555 2.36 LINK O ALA A 269 CA CA A 502 1555 1555 2.34 LINK O TYR A 271 CA CA A 502 1555 1555 2.40 LINK OD1 ASP A 273 CA CA A 502 1555 1555 2.44 LINK OE1 GLU A 309 CA CA A 502 1555 1555 2.46 LINK OE2 GLU A 309 CA CA A 502 1555 1555 2.45 LINK CA CA A 501 O HOH A 613 1555 1555 2.48 LINK CA CA A 501 O HOH A 651 1555 1555 2.46 LINK CA CA A 501 O HOH A 758 1555 1555 2.44 LINK CA CA A 501 O HOH A 871 1555 1555 2.45 LINK CA CA A 502 O HOH A 688 1555 1555 2.55 LINK CA CA A 502 O HOH A 753 1555 1555 2.35 LINK CA CA A 503 O HOH A 684 1555 1555 3.02 LINK CA CA A 503 O HOH A 930 1555 1555 3.00 LINK O HOH A 779 CA CA B 503 1645 1555 2.74 LINK OE1 GLU B 253 CA CA B 501 1555 1555 2.48 LINK OE2 GLU B 253 CA CA B 501 1555 1555 2.43 LINK O TYR B 263 CA CA B 501 1555 1555 2.35 LINK O ALA B 269 CA CA B 502 1555 1555 2.38 LINK O TYR B 271 CA CA B 502 1555 1555 2.38 LINK OD1 ASP B 273 CA CA B 502 1555 1555 2.47 LINK OE1 GLU B 309 CA CA B 502 1555 1555 2.48 LINK OE2 GLU B 309 CA CA B 502 1555 1555 2.47 LINK CA CA B 501 O HOH B 629 1555 1555 2.53 LINK CA CA B 501 O HOH B 634 1555 1555 2.45 LINK CA CA B 501 O HOH B 723 1555 1555 2.37 LINK CA CA B 501 O HOH B 880 1555 1555 2.49 LINK CA CA B 502 O HOH B 638 1555 1555 2.54 LINK CA CA B 502 O HOH B 707 1555 1555 2.35 LINK CA CA B 503 O HOH B 662 1555 1555 2.45 LINK CA CA B 503 O HOH B 759 1555 1555 2.28 LINK CA CA B 503 O HOH B 810 1555 1555 2.41 LINK CA CA B 503 O HOH B 952 1555 1555 2.31 LINK CA CA B 503 O HOH B1057 1555 1555 2.52 CISPEP 1 TRP A 265 PRO A 266 0 -0.95 CISPEP 2 LEU A 324 TYR A 325 0 6.09 CISPEP 3 TRP B 265 PRO B 266 0 3.61 CISPEP 4 LEU B 324 TYR B 325 0 8.87 SITE 1 AC1 6 GLU A 253 TYR A 263 HOH A 613 HOH A 651 SITE 2 AC1 6 HOH A 758 HOH A 871 SITE 1 AC2 6 ALA A 269 TYR A 271 ASP A 273 GLU A 309 SITE 2 AC2 6 HOH A 688 HOH A 753 SITE 1 AC3 3 ARG A 406 HOH A 684 HOH A 930 SITE 1 AC4 2 THR A 183 GLN A 185 SITE 1 AC5 6 GLU B 253 TYR B 263 HOH B 629 HOH B 634 SITE 2 AC5 6 HOH B 723 HOH B 880 SITE 1 AC6 6 ALA B 269 TYR B 271 ASP B 273 GLU B 309 SITE 2 AC6 6 HOH B 638 HOH B 707 SITE 1 AC7 6 HOH A 779 HOH B 662 HOH B 759 HOH B 810 SITE 2 AC7 6 HOH B 952 HOH B1057 CRYST1 54.407 54.898 85.474 88.04 81.58 69.62 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018380 -0.006828 -0.002845 0.00000 SCALE2 0.000000 0.019432 0.000352 0.00000 SCALE3 0.000000 0.000000 0.011829 0.00000