HEADER OXIDOREDUCTASE 29-NOV-16 5MIR TITLE CRYSTAL STRUCTURE OF LACTOCOCCUS LACTIS THIOREDOXIN REDUCTASE EXPOSED TITLE 2 TO VISIBLE LIGHT (120 MIN) COMPND MOL_ID: 1; COMPND 2 MOLECULE: THIOREDOXIN REDUCTASE; COMPND 3 CHAIN: A; COMPND 4 EC: 1.8.1.9; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LACTOCOCCUS LACTIS SUBSP. CREMORIS; SOURCE 3 ORGANISM_TAXID: 1359; SOURCE 4 GENE: N41_1746, NCDO763_0431; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VARIANT: ROSETTA DE3; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET15B KEYWDS THIOREDOXIN REDUCTASE, PHOTOSENSITIVITY, REACTIVE OXYGEN SPECIES, FAD KEYWDS 2 SI-FACE OPEN SPACE, OXYGEN POCKET, FAD-NADP+ COMPLEX, FO-FR KEYWDS 3 CONFORMATIONS, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR N.SKJOLDAGER,M.B.BANG,B.SVENSSON,P.HAGGLUND,P.HARRIS REVDAT 4 17-JAN-24 5MIR 1 REMARK REVDAT 3 17-JAN-18 5MIR 1 REMARK REVDAT 2 19-APR-17 5MIR 1 JRNL REVDAT 1 12-APR-17 5MIR 0 JRNL AUTH N.SKJOLDAGER,M.BLANNER BANG,M.RYKR,O.BJORNBERG,M.J.DAVIES, JRNL AUTH 2 B.SVENSSON,P.HARRIS,P.HAGGLUND JRNL TITL THE STRUCTURE OF LACTOCOCCUS LACTIS THIOREDOXIN REDUCTASE JRNL TITL 2 REVEALS MOLECULAR FEATURES OF PHOTO-OXIDATIVE DAMAGE. JRNL REF SCI REP V. 7 46282 2017 JRNL REFN ESSN 2045-2322 JRNL PMID 28397795 JRNL DOI 10.1038/SREP46282 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0032 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.85 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 29458 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.184 REMARK 3 R VALUE (WORKING SET) : 0.183 REMARK 3 FREE R VALUE : 0.217 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1552 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2147 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.96 REMARK 3 BIN R VALUE (WORKING SET) : 0.2430 REMARK 3 BIN FREE R VALUE SET COUNT : 113 REMARK 3 BIN FREE R VALUE : 0.2900 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2347 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 125 REMARK 3 SOLVENT ATOMS : 247 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.58 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.55000 REMARK 3 B22 (A**2) : 0.55000 REMARK 3 B33 (A**2) : -1.11000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.142 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.134 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.096 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.496 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.957 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.940 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2526 ; 0.018 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2350 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3426 ; 2.056 ; 2.016 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5417 ; 0.881 ; 3.001 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 304 ; 7.549 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 113 ;34.874 ;24.956 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 421 ;15.343 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 13 ;20.344 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 372 ; 0.119 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2803 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 552 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1213 ; 2.919 ; 2.801 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1212 ; 2.920 ; 2.798 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1515 ; 4.068 ; 4.186 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 5MIR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 29-NOV-16. REMARK 100 THE DEPOSITION ID IS D_1200002526. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-FEB-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0-8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : MAX II REMARK 200 BEAMLINE : I911-3 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97898 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31056 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 42.860 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 7.500 REMARK 200 R MERGE (I) : 0.07500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.1300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.05 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.80 REMARK 200 R MERGE FOR SHELL (I) : 0.50900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.660 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 1F6M REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.03 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.33 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 35% PEG 1500, 400 MM LI2SO4, 20 MM REMARK 280 HEPES, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 30.31000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 60.58500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 60.58500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 15.15500 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 60.58500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 60.58500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 45.46500 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 60.58500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 60.58500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 15.15500 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 60.58500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 60.58500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 45.46500 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 30.31000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 11120 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24230 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -59.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 30.31000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 514 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 465 LEU A -6 REMARK 465 VAL A -5 REMARK 465 PRO A -4 REMARK 465 ARG A -3 REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 GLU A 3 REMARK 465 LYS A 4 REMARK 465 GLY A 308 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 690 O HOH A 732 1.74 REMARK 500 OH TYR A 237 O HOH A 501 1.85 REMARK 500 O HOH A 692 O HOH A 729 1.91 REMARK 500 O HOH A 688 O HOH A 744 2.00 REMARK 500 O HOH A 734 O HOH A 738 2.02 REMARK 500 O HIS A 89 O TYR A 92 2.11 REMARK 500 O HOH A 688 O HOH A 728 2.15 REMARK 500 OH TYR A 218 O HOH A 502 2.16 REMARK 500 O HOH A 612 O HOH A 724 2.19 REMARK 500 OE2 GLU A 245 O HOH A 503 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 677 O HOH A 691 8555 1.93 REMARK 500 O HOH A 630 O HOH A 677 8555 2.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 26 NE - CZ - NH2 ANGL. DEV. = -3.7 DEGREES REMARK 500 ASN A 268 CB - CA - C ANGL. DEV. = -16.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 244 34.27 -147.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FAD A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NAP A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 406 DBREF1 5MIR A 1 308 UNP A0A166TWQ7_LACLC DBREF2 5MIR A A0A166TWQ7 1 308 SEQADV 5MIR GLY A -18 UNP A0A166TWQ EXPRESSION TAG SEQADV 5MIR SER A -17 UNP A0A166TWQ EXPRESSION TAG SEQADV 5MIR SER A -16 UNP A0A166TWQ EXPRESSION TAG SEQADV 5MIR HIS A -15 UNP A0A166TWQ EXPRESSION TAG SEQADV 5MIR HIS A -14 UNP A0A166TWQ EXPRESSION TAG SEQADV 5MIR HIS A -13 UNP A0A166TWQ EXPRESSION TAG SEQADV 5MIR HIS A -12 UNP A0A166TWQ EXPRESSION TAG SEQADV 5MIR HIS A -11 UNP A0A166TWQ EXPRESSION TAG SEQADV 5MIR HIS A -10 UNP A0A166TWQ EXPRESSION TAG SEQADV 5MIR SER A -9 UNP A0A166TWQ EXPRESSION TAG SEQADV 5MIR SER A -8 UNP A0A166TWQ EXPRESSION TAG SEQADV 5MIR GLY A -7 UNP A0A166TWQ EXPRESSION TAG SEQADV 5MIR LEU A -6 UNP A0A166TWQ EXPRESSION TAG SEQADV 5MIR VAL A -5 UNP A0A166TWQ EXPRESSION TAG SEQADV 5MIR PRO A -4 UNP A0A166TWQ EXPRESSION TAG SEQADV 5MIR ARG A -3 UNP A0A166TWQ EXPRESSION TAG SEQADV 5MIR GLY A -2 UNP A0A166TWQ EXPRESSION TAG SEQADV 5MIR SER A -1 UNP A0A166TWQ EXPRESSION TAG SEQADV 5MIR HIS A 0 UNP A0A166TWQ EXPRESSION TAG SEQRES 1 A 327 GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY LEU SEQRES 2 A 327 VAL PRO ARG GLY SER HIS MET THR GLU LYS LYS TYR ASP SEQRES 3 A 327 VAL VAL ILE ILE GLY SER GLY PRO ALA GLY MET THR ALA SEQRES 4 A 327 ALA MET TYR THR ALA ARG SER GLU MET LYS THR LEU LEU SEQRES 5 A 327 LEU GLU ARG GLY VAL PRO GLY GLY GLN MET ASN ASN THR SEQRES 6 A 327 ALA GLU ILE GLU ASN TYR PRO GLY TYR GLU THR ILE MET SEQRES 7 A 327 GLY PRO GLU LEU SER MET LYS MET ALA GLU PRO LEU GLU SEQRES 8 A 327 GLY LEU GLY VAL GLU ASN ALA TYR GLY PHE VAL THR GLY SEQRES 9 A 327 ILE GLU ASP HIS GLY ASP TYR LYS LYS ILE ILE THR GLU SEQRES 10 A 327 ASP ASP GLU PHE ILE THR LYS SER ILE ILE ILE ALA THR SEQRES 11 A 327 GLY ALA ASN HIS ARG LYS LEU GLU ILE PRO GLY GLU GLU SEQRES 12 A 327 GLU TYR GLY ALA ARG GLY VAL SER TYR CYS ALA VAL CYS SEQRES 13 A 327 ASP GLY ALA PHE PHE ARG ASN GLN GLU ILE LEU VAL ILE SEQRES 14 A 327 GLY GLY GLY ASP SER ALA VAL GLU GLU ALA LEU TYR LEU SEQRES 15 A 327 THR ARG PHE GLY GLN SER VAL THR ILE MET HIS ARG ARG SEQRES 16 A 327 ASP LYS LEU ARG ALA GLN GLU ILE ILE GLN GLN ARG ALA SEQRES 17 A 327 PHE LYS GLU GLU LYS ILE ASN PHE ILE TRP ASP SER VAL SEQRES 18 A 327 PRO MET GLU ILE LYS GLY ASP ASP LYS LYS ILE GLN SER SEQRES 19 A 327 VAL VAL TYR LYS ASN VAL LYS THR GLY GLU VAL THR GLU SEQRES 20 A 327 LYS ALA PHE GLY GLY ILE PHE ILE TYR VAL GLY LEU ASP SEQRES 21 A 327 PRO VAL ALA GLU PHE VAL SER ASP LEU GLY ILE THR ASP SEQRES 22 A 327 GLU ALA GLY TRP ILE ILE THR ASP ASP HIS MET ARG THR SEQRES 23 A 327 ASN ILE PRO GLY ILE PHE ALA VAL GLY ASP VAL ARG GLN SEQRES 24 A 327 LYS ASP PHE ARG GLN ILE THR THR ALA VAL GLY ASP GLY SEQRES 25 A 327 ALA GLN ALA ALA GLN GLU ALA TYR LYS PHE VAL VAL GLU SEQRES 26 A 327 LEU GLY HET FAD A 401 53 HET NAP A 402 48 HET PEG A 403 7 HET PEG A 404 7 HET SO4 A 405 5 HET SO4 A 406 5 HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE HETNAM NAP NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM SO4 SULFATE ION HETSYN NAP 2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE FORMUL 2 FAD C27 H33 N9 O15 P2 FORMUL 3 NAP C21 H28 N7 O17 P3 FORMUL 4 PEG 2(C4 H10 O3) FORMUL 6 SO4 2(O4 S 2-) FORMUL 8 HOH *247(H2 O) HELIX 1 AA1 GLY A 14 SER A 27 1 14 HELIX 2 AA2 GLY A 40 THR A 46 5 7 HELIX 3 AA3 GLY A 60 GLU A 69 1 10 HELIX 4 AA4 CYS A 134 GLY A 139 1 6 HELIX 5 AA5 ALA A 140 ARG A 143 5 4 HELIX 6 AA6 GLY A 153 THR A 164 1 12 HELIX 7 AA7 GLN A 182 GLU A 192 1 11 HELIX 8 AA8 ALA A 244 GLY A 251 5 8 HELIX 9 AA9 GLY A 276 ARG A 279 5 4 HELIX 10 AB1 GLN A 285 LEU A 307 1 23 SHEET 1 AA1 6 GLU A 77 TYR A 80 0 SHEET 2 AA1 6 THR A 31 GLU A 35 1 N LEU A 33 O GLU A 77 SHEET 3 AA1 6 TYR A 6 ILE A 11 1 N ILE A 10 O LEU A 32 SHEET 4 AA1 6 GLU A 101 ILE A 109 1 O LYS A 105 N TYR A 6 SHEET 5 AA1 6 TYR A 92 THR A 97 -1 N ILE A 95 O PHE A 102 SHEET 6 AA1 6 VAL A 83 HIS A 89 -1 N GLY A 85 O ILE A 96 SHEET 1 AA2 5 GLU A 77 TYR A 80 0 SHEET 2 AA2 5 THR A 31 GLU A 35 1 N LEU A 33 O GLU A 77 SHEET 3 AA2 5 TYR A 6 ILE A 11 1 N ILE A 10 O LEU A 32 SHEET 4 AA2 5 GLU A 101 ILE A 109 1 O LYS A 105 N TYR A 6 SHEET 5 AA2 5 ILE A 272 ALA A 274 1 O PHE A 273 N ILE A 109 SHEET 1 AA3 2 GLU A 48 ILE A 49 0 SHEET 2 AA3 2 ILE A 58 MET A 59 -1 O ILE A 58 N ILE A 49 SHEET 1 AA4 2 ALA A 113 HIS A 115 0 SHEET 2 AA4 2 LEU A 240 PRO A 242 -1 O ASP A 241 N ASN A 114 SHEET 1 AA5 5 VAL A 131 SER A 132 0 SHEET 2 AA5 5 GLY A 233 ILE A 236 1 O ILE A 234 N SER A 132 SHEET 3 AA5 5 GLU A 146 ILE A 150 1 N ILE A 150 O PHE A 235 SHEET 4 AA5 5 SER A 169 MET A 173 1 O THR A 171 N VAL A 149 SHEET 5 AA5 5 ILE A 195 ILE A 198 1 O ILE A 198 N ILE A 172 SHEET 1 AA6 3 SER A 201 GLY A 208 0 SHEET 2 AA6 3 ILE A 213 ASN A 220 -1 O VAL A 217 N MET A 204 SHEET 3 AA6 3 VAL A 226 ALA A 230 -1 O THR A 227 N TYR A 218 SSBOND 1 CYS A 134 CYS A 137 1555 1555 2.14 SITE 1 AC1 36 GLY A 12 GLY A 14 PRO A 15 ALA A 16 SITE 2 AC1 36 GLU A 35 ARG A 36 GLY A 41 GLN A 42 SITE 3 AC1 36 THR A 46 ASN A 51 GLY A 81 PHE A 82 SITE 4 AC1 36 VAL A 83 ALA A 110 THR A 111 GLY A 112 SITE 5 AC1 36 GLU A 159 VAL A 243 GLY A 276 ASP A 277 SITE 6 AC1 36 ARG A 284 GLN A 285 ILE A 286 NAP A 402 SITE 7 AC1 36 HOH A 538 HOH A 540 HOH A 554 HOH A 556 SITE 8 AC1 36 HOH A 559 HOH A 576 HOH A 578 HOH A 606 SITE 9 AC1 36 HOH A 629 HOH A 671 HOH A 672 HOH A 721 SITE 1 AC2 35 ASN A 51 ILE A 150 GLY A 151 GLY A 152 SITE 2 AC2 35 GLY A 153 ASP A 154 SER A 155 GLU A 158 SITE 3 AC2 35 MET A 173 HIS A 174 ARG A 175 ARG A 176 SITE 4 AC2 35 ARG A 180 GLU A 193 VAL A 202 TYR A 237 SITE 5 AC2 35 VAL A 238 GLY A 239 LEU A 240 ARG A 284 SITE 6 AC2 35 GLN A 285 FAD A 401 HOH A 512 HOH A 515 SITE 7 AC2 35 HOH A 522 HOH A 523 HOH A 531 HOH A 537 SITE 8 AC2 35 HOH A 542 HOH A 573 HOH A 585 HOH A 613 SITE 9 AC2 35 HOH A 631 HOH A 646 HOH A 648 SITE 1 AC3 7 SER A 13 LEU A 33 PRO A 39 ALA A 68 SITE 2 AC3 7 ASN A 78 HOH A 504 HOH A 509 SITE 1 AC4 4 ASP A 262 ARG A 266 THR A 267 ASN A 268 SITE 1 AC5 6 PRO A 121 GLY A 122 GLU A 123 GLU A 124 SITE 2 AC5 6 GLU A 125 HOH A 521 SITE 1 AC6 6 ARG A 116 ARG A 175 HOH A 518 HOH A 567 SITE 2 AC6 6 HOH A 589 HOH A 592 CRYST1 121.170 121.170 60.620 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008253 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008253 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016496 0.00000