HEADER LIGASE 29-NOV-16 5MIY TITLE CRYSTAL STRUCTURE OF THE E3 UBIQUITIN LIGASE RAVN FROM LEGIONELLA TITLE 2 PNEUMOPHILA COMPND MOL_ID: 1; COMPND 2 MOLECULE: E3 UBIQUITIN LIGASE RAVN; COMPND 3 CHAIN: A, B, C; COMPND 4 FRAGMENT: RESIDUES 1-123; COMPND 5 EC: 6.3.2.19; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LEGIONELLA PNEUMOPHILA; SOURCE 3 ORGANISM_TAXID: 446; SOURCE 4 GENE: ERS253249_02460; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PGST-PARALLEL2 KEYWDS LEGIONELLA EFFECTOR, E3 UBIQUITIN LIGASE, UNKNOWN FUNCTION, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR M.LUCAS,G.ABASCAL-PALACIOS,A.L.ROJAS,A.HIERRO REVDAT 2 08-MAY-24 5MIY 1 LINK REVDAT 1 23-MAY-18 5MIY 0 JRNL AUTH Y.H.LIN,M.LUCAS,T.R.EVANS,G.ABASCAL-PALACIOS,A.G.DOMS, JRNL AUTH 2 N.A.BEAUCHENE,A.L.ROJAS,A.HIERRO,M.P.MACHNER JRNL TITL RAVN IS A MEMBER OF A PREVIOUSLY UNRECOGNIZED GROUP OF JRNL TITL 2 LEGIONELLA PNEUMOPHILA E3 UBIQUITIN LIGASES. JRNL REF PLOS PATHOG. V. 14 06897 2018 JRNL REFN ESSN 1553-7374 JRNL PMID 29415051 JRNL DOI 10.1371/JOURNAL.PPAT.1006897 REMARK 2 REMARK 2 RESOLUTION. 1.72 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.72 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.36 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.380 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 85742 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.162 REMARK 3 R VALUE (WORKING SET) : 0.161 REMARK 3 FREE R VALUE : 0.195 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4287 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.3736 - 5.3313 0.99 2892 152 0.1581 0.1819 REMARK 3 2 5.3313 - 4.2326 1.00 2791 147 0.1318 0.1772 REMARK 3 3 4.2326 - 3.6978 1.00 2795 147 0.1355 0.1453 REMARK 3 4 3.6978 - 3.3598 1.00 2746 145 0.1496 0.1810 REMARK 3 5 3.3598 - 3.1191 1.00 2751 145 0.1603 0.2035 REMARK 3 6 3.1191 - 2.9352 1.00 2718 143 0.1854 0.2139 REMARK 3 7 2.9352 - 2.7882 1.00 2761 145 0.1667 0.2008 REMARK 3 8 2.7882 - 2.6669 1.00 2730 144 0.1717 0.1921 REMARK 3 9 2.6669 - 2.5642 1.00 2713 142 0.1534 0.1943 REMARK 3 10 2.5642 - 2.4757 1.00 2708 143 0.1698 0.2332 REMARK 3 11 2.4757 - 2.3983 1.00 2710 143 0.1600 0.2093 REMARK 3 12 2.3983 - 2.3298 1.00 2738 144 0.1613 0.2111 REMARK 3 13 2.3298 - 2.2684 1.00 2704 142 0.1594 0.2189 REMARK 3 14 2.2684 - 2.2131 1.00 2717 143 0.1587 0.1921 REMARK 3 15 2.2131 - 2.1628 1.00 2687 142 0.1507 0.1700 REMARK 3 16 2.1628 - 2.1167 1.00 2735 144 0.1487 0.1785 REMARK 3 17 2.1167 - 2.0744 1.00 2712 142 0.1473 0.1870 REMARK 3 18 2.0744 - 2.0353 1.00 2676 141 0.1582 0.2116 REMARK 3 19 2.0353 - 1.9989 1.00 2711 143 0.1747 0.2170 REMARK 3 20 1.9989 - 1.9650 1.00 2688 140 0.1736 0.1966 REMARK 3 21 1.9650 - 1.9333 1.00 2720 144 0.1764 0.2292 REMARK 3 22 1.9333 - 1.9036 1.00 2687 141 0.1921 0.2247 REMARK 3 23 1.9036 - 1.8756 1.00 2708 143 0.1968 0.2234 REMARK 3 24 1.8756 - 1.8492 1.00 2666 140 0.2219 0.2653 REMARK 3 25 1.8492 - 1.8242 1.00 2749 145 0.2258 0.3036 REMARK 3 26 1.8242 - 1.8005 1.00 2674 141 0.2394 0.3127 REMARK 3 27 1.8005 - 1.7780 1.00 2697 141 0.2610 0.2965 REMARK 3 28 1.7780 - 1.7566 1.00 2679 141 0.2789 0.2972 REMARK 3 29 1.7566 - 1.7361 1.00 2663 141 0.2962 0.3079 REMARK 3 30 1.7361 - 1.7170 0.93 2529 133 0.3408 0.3711 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.180 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.190 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 31.64 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 48.03 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5MIY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 30-NOV-16. REMARK 100 THE DEPOSITION ID IS D_1200002525. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-JUL-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALBA REMARK 200 BEAMLINE : XALOC REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.978870 REMARK 200 MONOCHROMATOR : SI(111) CHANNEL-CUT, CRYOCOOLED REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XSCALE REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 85768 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.720 REMARK 200 RESOLUTION RANGE LOW (A) : 47.969 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 13.22 REMARK 200 R MERGE (I) : 0.05500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 24.5700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.72 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.82 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.6 REMARK 200 DATA REDUNDANCY IN SHELL : 12.74 REMARK 200 R MERGE FOR SHELL (I) : 0.87400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.140 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SIRAS REMARK 200 SOFTWARE USED: SHELX, SHELXD REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 73.24 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.60 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.5 M AMMONIUM SULPHATE, 0.1 M REMARK 280 NACITRATE PH 5.4 AND 0.2 M K/NA TARTRATE, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z REMARK 290 7555 -X+1/2,Y+1/2,-Z REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 57.08000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 88.50500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 57.08000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 88.50500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 57.08000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 88.50500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 57.08000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 88.50500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 388 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 391 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN A 123 REMARK 465 GLY B -4 REMARK 465 ALA B -3 REMARK 465 MET B -2 REMARK 465 GLY B -1 REMARK 465 SER B 0 REMARK 465 GLY C -4 REMARK 465 ALA C -3 REMARK 465 MET C -2 REMARK 465 GLY C -1 REMARK 465 SER C 0 REMARK 465 GLN C 123 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA C 92 -37.41 69.79 REMARK 500 SER C 106 173.08 177.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 208 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 42 O REMARK 620 2 ILE C 88 O 127.3 REMARK 620 3 HOH C 380 O 121.7 111.0 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 207 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 45 O REMARK 620 2 HOH A 355 O 141.3 REMARK 620 3 HOH C 365 O 128.5 87.3 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA C 206 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 301 O REMARK 620 2 ILE C 57 O 95.2 REMARK 620 3 HOH C 318 O 106.1 127.9 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 206 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 207 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 208 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 206 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 207 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 C 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 C 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 C 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 C 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO C 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA C 206 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA C 207 DBREF1 5MIY A 1 123 UNP A0A130MLL2_LEGPN DBREF2 5MIY A A0A130MLL2 1 123 DBREF1 5MIY B 1 123 UNP A0A130MLL2_LEGPN DBREF2 5MIY B A0A130MLL2 1 123 DBREF1 5MIY C 1 123 UNP A0A130MLL2_LEGPN DBREF2 5MIY C A0A130MLL2 1 123 SEQADV 5MIY GLY A -4 UNP A0A130MLL EXPRESSION TAG SEQADV 5MIY ALA A -3 UNP A0A130MLL EXPRESSION TAG SEQADV 5MIY MET A -2 UNP A0A130MLL EXPRESSION TAG SEQADV 5MIY GLY A -1 UNP A0A130MLL EXPRESSION TAG SEQADV 5MIY SER A 0 UNP A0A130MLL EXPRESSION TAG SEQADV 5MIY GLY B -4 UNP A0A130MLL EXPRESSION TAG SEQADV 5MIY ALA B -3 UNP A0A130MLL EXPRESSION TAG SEQADV 5MIY MET B -2 UNP A0A130MLL EXPRESSION TAG SEQADV 5MIY GLY B -1 UNP A0A130MLL EXPRESSION TAG SEQADV 5MIY SER B 0 UNP A0A130MLL EXPRESSION TAG SEQADV 5MIY GLY C -4 UNP A0A130MLL EXPRESSION TAG SEQADV 5MIY ALA C -3 UNP A0A130MLL EXPRESSION TAG SEQADV 5MIY MET C -2 UNP A0A130MLL EXPRESSION TAG SEQADV 5MIY GLY C -1 UNP A0A130MLL EXPRESSION TAG SEQADV 5MIY SER C 0 UNP A0A130MLL EXPRESSION TAG SEQRES 1 A 128 GLY ALA MET GLY SER MET PRO THR TYR PHE ASP PRO ILE SEQRES 2 A 128 MET GLN GLU ASP THR VAL LEU ASP GLU ASN THR ILE VAL SEQRES 3 A 128 TYR LEU VAL LYS ILE GLY ASP ASN LYS PHE SER ILE LYS SEQRES 4 A 128 ALA ILE SER SER GLY LEU GLU HIS LEU PRO SER ASP PRO SEQRES 5 A 128 THR THR HIS ALA GLU LYS TYR TRP PRO ILE PRO ALA LYS SEQRES 6 A 128 SER LEU ILE ASP HIS SER SER ASN LYS LEU LEU PHE GLU SEQRES 7 A 128 GLU ASP LYS LEU THR ASN GLN PRO ILE SER LYS ASP GLN SEQRES 8 A 128 VAL ILE GLU LEU PHE ALA VAL ASP PRO ASP LYS THR GLU SEQRES 9 A 128 PRO LYS GLN PHE SER ASP SER VAL LYS ARG GLU LEU THR SEQRES 10 A 128 GLU ASN TRP ALA ARG GLU VAL LEU GLN ASP GLN SEQRES 1 B 128 GLY ALA MET GLY SER MET PRO THR TYR PHE ASP PRO ILE SEQRES 2 B 128 MET GLN GLU ASP THR VAL LEU ASP GLU ASN THR ILE VAL SEQRES 3 B 128 TYR LEU VAL LYS ILE GLY ASP ASN LYS PHE SER ILE LYS SEQRES 4 B 128 ALA ILE SER SER GLY LEU GLU HIS LEU PRO SER ASP PRO SEQRES 5 B 128 THR THR HIS ALA GLU LYS TYR TRP PRO ILE PRO ALA LYS SEQRES 6 B 128 SER LEU ILE ASP HIS SER SER ASN LYS LEU LEU PHE GLU SEQRES 7 B 128 GLU ASP LYS LEU THR ASN GLN PRO ILE SER LYS ASP GLN SEQRES 8 B 128 VAL ILE GLU LEU PHE ALA VAL ASP PRO ASP LYS THR GLU SEQRES 9 B 128 PRO LYS GLN PHE SER ASP SER VAL LYS ARG GLU LEU THR SEQRES 10 B 128 GLU ASN TRP ALA ARG GLU VAL LEU GLN ASP GLN SEQRES 1 C 128 GLY ALA MET GLY SER MET PRO THR TYR PHE ASP PRO ILE SEQRES 2 C 128 MET GLN GLU ASP THR VAL LEU ASP GLU ASN THR ILE VAL SEQRES 3 C 128 TYR LEU VAL LYS ILE GLY ASP ASN LYS PHE SER ILE LYS SEQRES 4 C 128 ALA ILE SER SER GLY LEU GLU HIS LEU PRO SER ASP PRO SEQRES 5 C 128 THR THR HIS ALA GLU LYS TYR TRP PRO ILE PRO ALA LYS SEQRES 6 C 128 SER LEU ILE ASP HIS SER SER ASN LYS LEU LEU PHE GLU SEQRES 7 C 128 GLU ASP LYS LEU THR ASN GLN PRO ILE SER LYS ASP GLN SEQRES 8 C 128 VAL ILE GLU LEU PHE ALA VAL ASP PRO ASP LYS THR GLU SEQRES 9 C 128 PRO LYS GLN PHE SER ASP SER VAL LYS ARG GLU LEU THR SEQRES 10 C 128 GLU ASN TRP ALA ARG GLU VAL LEU GLN ASP GLN HET SO4 A 201 5 HET SO4 A 202 5 HET SO4 A 203 5 HET SO4 A 204 5 HET EDO A 205 4 HET EDO A 206 4 HET NA A 207 1 HET NA A 208 1 HET SO4 B 201 5 HET SO4 B 202 5 HET SO4 B 203 5 HET SO4 B 204 5 HET SO4 B 205 5 HET EDO B 206 4 HET EDO B 207 4 HET SO4 C 201 5 HET SO4 C 202 5 HET SO4 C 203 5 HET SO4 C 204 5 HET EDO C 205 4 HET NA C 206 1 HET NA C 207 1 HETNAM SO4 SULFATE ION HETNAM EDO 1,2-ETHANEDIOL HETNAM NA SODIUM ION HETSYN EDO ETHYLENE GLYCOL FORMUL 4 SO4 13(O4 S 2-) FORMUL 8 EDO 5(C2 H6 O2) FORMUL 10 NA 4(NA 1+) FORMUL 26 HOH *237(H2 O) HELIX 1 AA1 PRO A 58 ASP A 64 1 7 HELIX 2 AA2 SER A 83 ALA A 92 1 10 HELIX 3 AA3 ASP A 94 THR A 98 5 5 HELIX 4 AA4 ASP A 105 GLN A 121 1 17 HELIX 5 AA5 GLY B 39 LEU B 43 5 5 HELIX 6 AA6 PRO B 58 ASP B 64 1 7 HELIX 7 AA7 SER B 83 ALA B 92 1 10 HELIX 8 AA8 SER B 104 ASP B 122 1 19 HELIX 9 AA9 PRO C 58 ASP C 64 1 7 HELIX 10 AB1 SER C 83 ALA C 92 1 10 HELIX 11 AB2 LYS C 108 GLN C 121 1 14 SHEET 1 AA1 2 THR A 3 ASP A 6 0 SHEET 2 AA1 2 GLU A 11 VAL A 14 -1 O GLU A 11 N ASP A 6 SHEET 1 AA2 4 LYS A 30 ILE A 36 0 SHEET 2 AA2 4 ILE A 20 GLY A 27 -1 N TYR A 22 O LYS A 34 SHEET 3 AA2 4 LYS A 53 PRO A 56 -1 O TRP A 55 N LEU A 23 SHEET 4 AA2 4 LYS A 101 GLN A 102 -1 O LYS A 101 N TYR A 54 SHEET 1 AA3 2 THR B 3 ASP B 6 0 SHEET 2 AA3 2 GLU B 11 VAL B 14 -1 O THR B 13 N TYR B 4 SHEET 1 AA4 4 LYS B 30 ILE B 36 0 SHEET 2 AA4 4 ILE B 20 GLY B 27 -1 N TYR B 22 O LYS B 34 SHEET 3 AA4 4 LYS B 53 ILE B 57 -1 O TRP B 55 N LEU B 23 SHEET 4 AA4 4 LYS B 101 GLN B 102 -1 O LYS B 101 N TYR B 54 SHEET 1 AA5 2 PHE B 72 GLU B 73 0 SHEET 2 AA5 2 LYS B 76 LEU B 77 -1 O LYS B 76 N GLU B 73 SHEET 1 AA6 2 THR C 3 ASP C 6 0 SHEET 2 AA6 2 GLU C 11 VAL C 14 -1 O THR C 13 N TYR C 4 SHEET 1 AA7 4 LYS C 30 ILE C 36 0 SHEET 2 AA7 4 ILE C 20 GLY C 27 -1 N TYR C 22 O LYS C 34 SHEET 3 AA7 4 LYS C 53 ILE C 57 -1 O TRP C 55 N LEU C 23 SHEET 4 AA7 4 LYS C 101 GLN C 102 -1 O LYS C 101 N TYR C 54 SHEET 1 AA8 2 PHE C 72 GLU C 73 0 SHEET 2 AA8 2 LYS C 76 LEU C 77 -1 O LYS C 76 N GLU C 73 LINK O HIS A 42 NA NA A 208 1555 1555 2.75 LINK O SER A 45 NA NA A 207 1555 1555 3.12 LINK NA NA A 207 O HOH A 355 1555 1555 3.16 LINK NA NA A 207 O HOH C 365 1555 1555 2.63 LINK NA NA A 208 O ILE C 88 1555 1555 2.64 LINK NA NA A 208 O HOH C 380 1555 1555 2.73 LINK O HOH A 301 NA NA C 206 1555 1555 2.72 LINK O ILE C 57 NA NA C 206 1555 1555 2.78 LINK NA NA C 206 O HOH C 318 1555 1555 2.72 LINK NA NA C 207 O HOH C 367 1555 3556 2.55 SITE 1 AC1 4 GLY A 39 LEU A 40 GLU A 41 HIS A 42 SITE 1 AC2 4 ASP A 64 HIS A 65 SER A 67 ASN A 68 SITE 1 AC3 3 ALA A 51 GLU A 52 LYS A 53 SITE 1 AC4 3 MET A -2 GLY A -4 ALA A -3 SITE 1 AC5 4 ALA A 59 HOH A 304 HOH A 309 HOH A 330 SITE 1 AC6 5 LEU A 40 GLU A 41 TYR A 54 GLN A 102 SITE 2 AC6 5 SER A 104 SITE 1 AC7 2 SER A 45 HOH C 365 SITE 1 AC8 5 HIS A 42 PRO A 44 VAL A 107 ILE C 88 SITE 2 AC8 5 HOH C 380 SITE 1 AC9 5 HIS B 65 SER B 67 ASN B 68 SO4 B 203 SITE 2 AC9 5 HOH B 369 SITE 1 AD1 4 SER B 61 LEU B 90 HOH B 301 HOH B 315 SITE 1 AD2 7 ASP B 64 HIS B 65 SER B 66 SER B 67 SITE 2 AD2 7 ASN B 68 SO4 B 201 HOH B 344 SITE 1 AD3 3 SER B 104 ASP B 105 SER B 106 SITE 1 AD4 2 LYS B 101 GLN B 102 SITE 1 AD5 4 THR B 19 VAL B 21 ILE B 57 ALA B 59 SITE 1 AD6 4 LYS B 25 PHE B 31 ASP B 96 HOH B 352 SITE 1 AD7 4 ASP C 64 HIS C 65 ASN C 68 HOH C 315 SITE 1 AD8 4 GLU C 41 ARG C 109 HOH C 348 HOH C 367 SITE 1 AD9 8 VAL A 107 GLU A 110 LEU A 111 ASN A 114 SITE 2 AD9 8 SER C 61 HIS C 65 LEU C 90 PHE C 91 SITE 1 AE1 5 PRO B 44 ARG C 117 GLU C 118 GLN C 121 SITE 2 AE1 5 HOH C 301 SITE 1 AE2 4 GLU C 99 TRP C 115 GLU C 118 VAL C 119 SITE 1 AE3 4 HOH A 301 VAL C 21 ILE C 57 HOH C 318 SITE 1 AE4 5 GLY C 39 GLU C 41 LYS C 108 ARG C 109 SITE 2 AE4 5 HOH C 367 CRYST1 114.160 177.010 79.450 90.00 90.00 90.00 C 2 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008760 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005649 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012587 0.00000