HEADER PHOTOSYNTHESIS 01-DEC-16 5MJQ TITLE SINGLE-SHOT PINK BEAM SERIAL CRYSTALLOGRAPHY: PHYCOCYANIN (ONE CHIP) COMPND MOL_ID: 1; COMPND 2 MOLECULE: C-PHYCOCYANIN ALPHA CHAIN; COMPND 3 CHAIN: A; COMPND 4 MOL_ID: 2; COMPND 5 MOLECULE: C-PHYCOCYANIN BETA CHAIN; COMPND 6 CHAIN: B; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOSYNECHOCOCCUS ELONGATUS (STRAIN BP-1); SOURCE 3 ORGANISM_TAXID: 197221; SOURCE 4 STRAIN: BP-1; SOURCE 5 MOL_ID: 2; SOURCE 6 ORGANISM_SCIENTIFIC: THERMOSYNECHOCOCCUS ELONGATUS (STRAIN BP-1); SOURCE 7 ORGANISM_TAXID: 197221; SOURCE 8 STRAIN: BP-1 KEYWDS PHYCOCYANIN, SERIAL CRYSTALLOGRAPHY, PINK BEAM, PHOTOSYNTHESIS EXPDTA X-RAY DIFFRACTION AUTHOR A.MEENTS,D.OBERTHUER,J.LIESKE,V.SRAJER,I.SARROU REVDAT 2 17-JAN-24 5MJQ 1 REMARK REVDAT 1 15-NOV-17 5MJQ 0 JRNL AUTH A.MEENTS,M.O.WIEDORN,V.SRAJER,R.HENNING,I.SARROU, JRNL AUTH 2 J.BERGTHOLDT,M.BARTHELMESS,P.Y.A.REINKE,D.DIERKSMEYER, JRNL AUTH 3 A.TOLSTIKOVA,S.SCHAIBLE,M.MESSERSCHMIDT,C.M.OGATA, JRNL AUTH 4 D.J.KISSICK,M.H.TAFT,D.J.MANSTEIN,J.LIESKE,D.OBERTHUER, JRNL AUTH 5 R.F.FISCHETTI,H.N.CHAPMAN JRNL TITL PINK-BEAM SERIAL CRYSTALLOGRAPHY. JRNL REF NAT COMMUN V. 8 1281 2017 JRNL REFN ESSN 2041-1723 JRNL PMID 29097720 JRNL DOI 10.1038/S41467-017-01417-3 REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.11.1_2575: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 14.92 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.620 REMARK 3 COMPLETENESS FOR RANGE (%) : 59.1 REMARK 3 NUMBER OF REFLECTIONS : 6646 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.160 REMARK 3 R VALUE (WORKING SET) : 0.154 REMARK 3 FREE R VALUE : 0.213 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.020 REMARK 3 FREE R VALUE TEST SET COUNT : 666 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 14.9177 - 4.5816 0.78 1620 177 0.1476 0.1990 REMARK 3 2 4.5816 - 3.6542 0.79 1591 180 0.1363 0.1792 REMARK 3 3 3.6542 - 3.1974 0.64 1284 143 0.1622 0.2391 REMARK 3 4 3.1974 - 2.9075 0.45 892 104 0.1782 0.2780 REMARK 3 5 2.9075 - 2.7004 0.29 593 62 0.1870 0.2223 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.260 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 15.200 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 13.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 2675 REMARK 3 ANGLE : 0.769 3638 REMARK 3 CHIRALITY : 0.034 401 REMARK 3 PLANARITY : 0.002 472 REMARK 3 DIHEDRAL : 10.616 1578 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 46 ) REMARK 3 ORIGIN FOR THE GROUP (A): 34.0671 -2.2262 24.4783 REMARK 3 T TENSOR REMARK 3 T11: 0.1478 T22: 0.0749 REMARK 3 T33: 0.1060 T12: -0.0039 REMARK 3 T13: 0.0339 T23: 0.0172 REMARK 3 L TENSOR REMARK 3 L11: 0.0798 L22: 0.4793 REMARK 3 L33: 0.1364 L12: 0.0209 REMARK 3 L13: 0.0205 L23: 0.2561 REMARK 3 S TENSOR REMARK 3 S11: 0.0879 S12: -0.1430 S13: -0.0188 REMARK 3 S21: -0.0017 S22: 0.0680 S23: -0.1626 REMARK 3 S31: -0.0484 S32: 0.0226 S33: 0.0592 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 47 THROUGH 67 ) REMARK 3 ORIGIN FOR THE GROUP (A): 35.5255 -36.6774 23.2343 REMARK 3 T TENSOR REMARK 3 T11: 0.1645 T22: 0.0740 REMARK 3 T33: 0.1293 T12: -0.0537 REMARK 3 T13: 0.0847 T23: -0.0200 REMARK 3 L TENSOR REMARK 3 L11: 0.0598 L22: 0.0335 REMARK 3 L33: 0.0404 L12: 0.0236 REMARK 3 L13: -0.0041 L23: -0.0323 REMARK 3 S TENSOR REMARK 3 S11: 0.0157 S12: -0.0337 S13: -0.0097 REMARK 3 S21: 0.0226 S22: -0.0028 S23: -0.0178 REMARK 3 S31: 0.0004 S32: -0.0031 S33: 0.0149 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 68 THROUGH 162 ) REMARK 3 ORIGIN FOR THE GROUP (A): 29.4684 -26.5777 23.4490 REMARK 3 T TENSOR REMARK 3 T11: -0.0052 T22: 0.0719 REMARK 3 T33: 0.0200 T12: 0.0321 REMARK 3 T13: 0.1026 T23: -0.0560 REMARK 3 L TENSOR REMARK 3 L11: 0.1564 L22: 0.1046 REMARK 3 L33: 0.1521 L12: -0.0205 REMARK 3 L13: -0.0860 L23: -0.0161 REMARK 3 S TENSOR REMARK 3 S11: -0.0482 S12: 0.0125 S13: -0.0599 REMARK 3 S21: -0.0744 S22: -0.0870 S23: -0.0362 REMARK 3 S31: 0.1017 S32: -0.0706 S33: -0.2207 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 20 ) REMARK 3 ORIGIN FOR THE GROUP (A): 31.9936 -11.8504 12.0839 REMARK 3 T TENSOR REMARK 3 T11: 0.1683 T22: 0.1213 REMARK 3 T33: 0.1159 T12: 0.0178 REMARK 3 T13: 0.0451 T23: -0.0175 REMARK 3 L TENSOR REMARK 3 L11: 0.0091 L22: 0.0134 REMARK 3 L33: 0.0015 L12: 0.0131 REMARK 3 L13: -0.0057 L23: -0.0060 REMARK 3 S TENSOR REMARK 3 S11: 0.0663 S12: 0.0055 S13: -0.0089 REMARK 3 S21: -0.0303 S22: -0.0157 S23: -0.0024 REMARK 3 S31: -0.0324 S32: 0.0718 S33: 0.0000 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 21 THROUGH 62 ) REMARK 3 ORIGIN FOR THE GROUP (A): 34.9370 11.1154 15.6156 REMARK 3 T TENSOR REMARK 3 T11: 0.1159 T22: 0.0744 REMARK 3 T33: 0.1859 T12: 0.0589 REMARK 3 T13: 0.0999 T23: -0.0478 REMARK 3 L TENSOR REMARK 3 L11: 0.2448 L22: 0.0911 REMARK 3 L33: 0.1280 L12: -0.0133 REMARK 3 L13: -0.1658 L23: -0.0399 REMARK 3 S TENSOR REMARK 3 S11: -0.1049 S12: 0.0273 S13: -0.1137 REMARK 3 S21: -0.0222 S22: -0.0144 S23: -0.0467 REMARK 3 S31: 0.1366 S32: -0.0830 S33: -0.2107 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 63 THROUGH 101 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.4218 19.6220 13.8270 REMARK 3 T TENSOR REMARK 3 T11: 0.1469 T22: 0.0467 REMARK 3 T33: 0.0508 T12: 0.0885 REMARK 3 T13: 0.0170 T23: -0.0051 REMARK 3 L TENSOR REMARK 3 L11: 0.1572 L22: 0.2529 REMARK 3 L33: 0.0251 L12: 0.1207 REMARK 3 L13: 0.0251 L23: -0.0016 REMARK 3 S TENSOR REMARK 3 S11: 0.0076 S12: -0.0309 S13: 0.0582 REMARK 3 S21: -0.0822 S22: -0.0368 S23: 0.0741 REMARK 3 S31: -0.0740 S32: -0.0267 S33: -0.0843 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 102 THROUGH 162 ) REMARK 3 ORIGIN FOR THE GROUP (A): 27.2316 13.1078 10.4378 REMARK 3 T TENSOR REMARK 3 T11: 0.1992 T22: 0.1538 REMARK 3 T33: 0.1312 T12: 0.0182 REMARK 3 T13: -0.0474 T23: -0.0190 REMARK 3 L TENSOR REMARK 3 L11: 0.0444 L22: 0.0863 REMARK 3 L33: 0.0405 L12: -0.0519 REMARK 3 L13: -0.0143 L23: -0.0112 REMARK 3 S TENSOR REMARK 3 S11: -0.0112 S12: 0.0376 S13: 0.0396 REMARK 3 S21: -0.2148 S22: -0.0074 S23: 0.0585 REMARK 3 S31: 0.0680 S32: -0.0982 S33: -0.0045 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5MJQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 01-DEC-16. REMARK 100 THE DEPOSITION ID IS D_1200002581. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-JUL-16 REMARK 200 TEMPERATURE (KELVIN) : 293 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 14-ID-B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : L REMARK 200 WAVELENGTH OR RANGE (A) : 1.15-1.25 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX340-HS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : EPINORM, PRECOGNITION REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 6647 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 14.918 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 59.1 REMARK 200 DATA REDUNDANCY : 1.000 REMARK 200 R MERGE (I) : 0.04100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 46.5600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.82 REMARK 200 COMPLETENESS FOR SHELL (%) : 0.3 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: LAUE REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1JBO REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.36 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.76 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: AMMONIUM SULFATE, LIQUID DIFFUSION, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 93.90000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 54.21319 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 20.23333 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 93.90000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 54.21319 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 20.23333 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 93.90000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 54.21319 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 20.23333 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 93.90000 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 54.21319 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 20.23333 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 93.90000 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 54.21319 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 20.23333 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 93.90000 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 54.21319 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 20.23333 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 108.42638 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 40.46667 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 108.42638 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 40.46667 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 108.42638 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 40.46667 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 108.42638 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 40.46667 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 108.42638 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 40.46667 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 108.42638 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 40.46667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DODECAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DODECAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 60570 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 68840 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -516.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 4 0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 60.70000 REMARK 350 BIOMT1 5 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 5 0.000000 0.000000 -1.000000 60.70000 REMARK 350 BIOMT1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 6 0.000000 0.000000 -1.000000 60.70000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 THR B 20 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 SG CYS B 153 HAC1 CYC B 202 1.26 REMARK 500 O TYR B 74 HG1 THR B 75 1.52 REMARK 500 O THR B 149 HC CYC B 202 1.57 REMARK 500 O ALA A 10 HG1 THR A 14 1.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O GLN A 25 HA3 GLY A 29 5556 1.46 REMARK 500 O SER A 50 O SER A 50 16545 1.94 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 50 -35.74 -37.12 REMARK 500 ALA A 75 46.54 -92.85 REMARK 500 LEU A 111 -61.92 -133.92 REMARK 500 THR B 75 155.56 74.68 REMARK 500 CYS B 109 -56.65 -136.34 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CYC A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CYC B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CYC B 202 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5MJM RELATED DB: PDB REMARK 900 5MJM CONTAINS THE SAME PROTEIN, ALSO SINGLE-PULSE PINK BEAM SERIAL REMARK 900 CRYSTALLOGRAPHY, BUT WITH FIVE CHIPS MERGED REMARK 900 RELATED ID: 5MJP RELATED DB: PDB REMARK 900 5MJP CONTAINS THE SAME PROTEIN, ALSO PINK BEAM SERIAL REMARK 900 CRYSTALLOGRAPHY, BUT WITH DATA COLLECTED IN MULTI-BUNCH MODE DBREF 5MJQ A 1 162 UNP P50032 PHCA_THEEB 1 162 DBREF 5MJQ B 1 172 UNP P50033 PHCB_THEEB 1 172 SEQRES 1 A 162 MET LYS THR PRO ILE THR GLU ALA ILE ALA ALA ALA ASP SEQRES 2 A 162 THR GLN GLY ARG PHE LEU SER ASN THR GLU LEU GLN ALA SEQRES 3 A 162 VAL ASP GLY ARG PHE LYS ARG ALA VAL ALA SER MET GLU SEQRES 4 A 162 ALA ALA ARG ALA LEU THR ASN ASN ALA GLN SER LEU ILE SEQRES 5 A 162 ASP GLY ALA ALA GLN ALA VAL TYR GLN LYS PHE PRO TYR SEQRES 6 A 162 THR THR THR MET GLN GLY SER GLN TYR ALA SER THR PRO SEQRES 7 A 162 GLU GLY LYS ALA LYS CYS ALA ARG ASP ILE GLY TYR TYR SEQRES 8 A 162 LEU ARG MET VAL THR TYR CYS LEU VAL ALA GLY GLY THR SEQRES 9 A 162 GLY PRO MET ASP GLU TYR LEU ILE ALA GLY LEU SER GLU SEQRES 10 A 162 ILE ASN SER THR PHE ASP LEU SER PRO SER TRP TYR ILE SEQRES 11 A 162 GLU ALA LEU LYS TYR ILE LYS ALA ASN HIS GLY LEU THR SEQRES 12 A 162 GLY GLN ALA ALA VAL GLU ALA ASN ALA TYR ILE ASP TYR SEQRES 13 A 162 ALA ILE ASN ALA LEU SER SEQRES 1 B 172 MET LEU ASP ALA PHE ALA LYS VAL VAL ALA GLN ALA ASP SEQRES 2 B 172 ALA ARG GLY GLU PHE LEU THR ASN ALA GLN PHE ASP ALA SEQRES 3 B 172 LEU SER ASN LEU VAL LYS GLU GLY ASN LYS ARG LEU ASP SEQRES 4 B 172 ALA VAL ASN ARG ILE THR SER ASN ALA SER THR ILE VAL SEQRES 5 B 172 ALA ASN ALA ALA ARG ALA LEU PHE ALA GLU GLN PRO GLN SEQRES 6 B 172 LEU ILE GLN PRO GLY GLY MEN ALA TYR THR ASN ARG ARG SEQRES 7 B 172 MET ALA ALA CYS LEU ARG ASP MET GLU ILE ILE LEU ARG SEQRES 8 B 172 TYR VAL THR TYR ALA ILE LEU ALA GLY ASP SER SER VAL SEQRES 9 B 172 LEU ASP ASP ARG CYS LEU ASN GLY LEU ARG GLU THR TYR SEQRES 10 B 172 GLN ALA LEU GLY THR PRO GLY SER SER VAL ALA VAL ALA SEQRES 11 B 172 ILE GLN LYS MET LYS ASP ALA ALA ILE ALA ILE ALA ASN SEQRES 12 B 172 ASP PRO ASN GLY ILE THR PRO GLY ASP CYS SER ALA LEU SEQRES 13 B 172 MET SER GLU ILE ALA GLY TYR PHE ASP ARG ALA ALA ALA SEQRES 14 B 172 ALA VAL ALA MODRES 5MJQ MEN B 72 ASN MODIFIED RESIDUE HET MEN B 72 15 HET CYC A 501 80 HET CYC B 201 80 HET CYC B 202 80 HETNAM MEN N-METHYL ASPARAGINE HETNAM CYC PHYCOCYANOBILIN FORMUL 2 MEN C5 H10 N2 O3 FORMUL 3 CYC 3(C33 H40 N4 O6) HELIX 1 AA1 THR A 3 THR A 14 1 12 HELIX 2 AA2 SER A 20 ASN A 47 1 28 HELIX 3 AA3 ASN A 47 PHE A 63 1 17 HELIX 4 AA4 PRO A 64 THR A 68 5 5 HELIX 5 AA5 THR A 77 GLY A 102 1 26 HELIX 6 AA6 THR A 104 LEU A 111 1 8 HELIX 7 AA7 GLY A 114 PHE A 122 1 9 HELIX 8 AA8 SER A 125 HIS A 140 1 16 HELIX 9 AA9 GLY A 144 SER A 162 1 19 HELIX 10 AB1 ASP B 3 GLY B 16 1 14 HELIX 11 AB2 THR B 20 GLU B 33 1 14 HELIX 12 AB3 GLU B 33 ASN B 47 1 15 HELIX 13 AB4 ASN B 47 GLN B 63 1 17 HELIX 14 AB5 PRO B 64 ILE B 67 5 4 HELIX 15 AB6 THR B 75 GLY B 100 1 26 HELIX 16 AB7 SER B 102 CYS B 109 1 8 HELIX 17 AB8 GLY B 112 GLY B 121 1 10 HELIX 18 AB9 PRO B 123 ASN B 143 1 21 HELIX 19 AC1 CYS B 153 ALA B 172 1 20 LINK SG CYS A 84 CAC CYC A 501 1555 1555 1.85 LINK C GLY B 71 N MEN B 72 1555 1555 1.33 LINK C MEN B 72 N ALA B 73 1555 1555 1.33 LINK SG CYS B 82 CAC CYC B 201 1555 1555 1.76 LINK SG CYS B 153 CAC CYC B 202 1555 1555 1.71 SITE 1 AC1 18 VAL A 59 SER A 72 GLN A 73 TYR A 74 SITE 2 AC1 18 ALA A 75 GLY A 80 LYS A 83 CYS A 84 SITE 3 AC1 18 ARG A 86 ASP A 87 TYR A 110 PHE A 122 SITE 4 AC1 18 LEU A 124 TRP A 128 TYR A 129 ARG B 57 SITE 5 AC1 18 THR B 75 ASN B 76 SITE 1 AC2 11 LEU B 66 MEN B 72 ARG B 77 ARG B 78 SITE 2 AC2 11 ALA B 81 CYS B 82 ARG B 84 ASP B 85 SITE 3 AC2 11 ARG B 108 LEU B 120 THR B 122 SITE 1 AC3 13 ASP A 28 ARG A 33 GLN A 145 ASN B 35 SITE 2 AC3 13 LYS B 36 LEU B 38 ASP B 39 ASN B 143 SITE 3 AC3 13 ILE B 148 THR B 149 PRO B 150 GLY B 151 SITE 4 AC3 13 CYS B 153 CRYST1 187.800 187.800 60.700 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005325 0.003074 0.000000 0.00000 SCALE2 0.000000 0.006149 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016474 0.00000