HEADER OXIDOREDUCTASE 06-DEC-16 5MLH TITLE PLANTAGO MAJOR MULTIFUNCTIONAL OXIDOREDUCTASE IN COMPLEX WITH 8- TITLE 2 OXOGERANIAL AND NADP+ COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROGESTERONE 5-BETA-REDUCTASE; COMPND 3 CHAIN: A; COMPND 4 EC: 1.1.1.145; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PLANTAGO MAJOR; SOURCE 3 ORGANISM_COMMON: COMMON PLANTAIN; SOURCE 4 ORGANISM_TAXID: 29818; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS PROGESTERONE REDUCTASE, IRIDOID SYNTHASE, SDR, ENZYME EVOLUTION, KEYWDS 2 OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR R.FELLOWS,C.M.RUSSO,S.G.LEE,J.M.JEZ,J.D.CHISHOLM,C.ZUBIETA,M.NANAO REVDAT 3 17-JAN-24 5MLH 1 COMPND LINK REVDAT 2 17-OCT-18 5MLH 1 COMPND JRNL REVDAT 1 01-AUG-18 5MLH 0 JRNL AUTH R.FELLOWS,C.M.RUSSO,C.S.SILVA,S.G.LEE,J.M.JEZ,J.D.CHISHOLM, JRNL AUTH 2 C.ZUBIETA,M.H.NANAO JRNL TITL A MULTISUBSTRATE REDUCTASE FROM PLANTAGO MAJOR: JRNL TITL 2 STRUCTURE-FUNCTION IN THE SHORT CHAIN REDUCTASE SUPERFAMILY. JRNL REF SCI REP V. 8 14796 2018 JRNL REFN ESSN 2045-2322 JRNL PMID 30287897 JRNL DOI 10.1038/S41598-018-32967-1 REMARK 2 REMARK 2 RESOLUTION. 1.86 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.2 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.86 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.86 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 89.3 REMARK 3 NUMBER OF REFLECTIONS : 33919 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.162 REMARK 3 R VALUE (WORKING SET) : 0.160 REMARK 3 FREE R VALUE : 0.204 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 1698 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 17 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 1.86 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 1.92 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 77.96 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2523 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2602 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2383 REMARK 3 BIN R VALUE (WORKING SET) : 0.2586 REMARK 3 BIN FREE R VALUE : 0.2873 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.55 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 140 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2911 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 68 REMARK 3 SOLVENT ATOMS : 192 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 39.49 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 49.31 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -3.01860 REMARK 3 B22 (A**2) : -3.01860 REMARK 3 B33 (A**2) : 6.03720 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.242 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.125 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.123 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.120 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.121 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.969 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.956 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 3102 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 4234 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1066 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 82 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 469 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 3102 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : 1 ; 5.000 ; SEMIHARMONIC REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 389 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 3760 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.015 REMARK 3 BOND ANGLES (DEGREES) : 1.18 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 4.06 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 18.31 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: {A|26 - 69} REMARK 3 ORIGIN FOR THE GROUP (A): -16.3766 -3.1926 23.8839 REMARK 3 T TENSOR REMARK 3 T11: -0.0208 T22: -0.0045 REMARK 3 T33: -0.0809 T12: -0.0834 REMARK 3 T13: -0.0265 T23: -0.0823 REMARK 3 L TENSOR REMARK 3 L11: 3.0690 L22: 2.7957 REMARK 3 L33: 4.9395 L12: 1.0433 REMARK 3 L13: -0.6435 L23: -1.2286 REMARK 3 S TENSOR REMARK 3 S11: -0.1098 S12: -0.4194 S13: 0.2932 REMARK 3 S21: 0.3120 S22: 0.0873 S23: -0.2370 REMARK 3 S31: -0.5358 S32: 0.5366 S33: 0.0225 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: {A|70 - 145} REMARK 3 ORIGIN FOR THE GROUP (A): -28.5871 1.1254 23.7870 REMARK 3 T TENSOR REMARK 3 T11: 0.0464 T22: -0.0830 REMARK 3 T33: -0.0976 T12: 0.0308 REMARK 3 T13: 0.0469 T23: -0.1006 REMARK 3 L TENSOR REMARK 3 L11: 1.9426 L22: 2.4385 REMARK 3 L33: 2.4545 L12: 0.5800 REMARK 3 L13: 0.1711 L23: -0.2208 REMARK 3 S TENSOR REMARK 3 S11: 0.0584 S12: -0.5118 S13: 0.3447 REMARK 3 S21: 0.3675 S22: -0.0372 S23: 0.1112 REMARK 3 S31: -0.5442 S32: -0.1705 S33: -0.0212 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: {A|146 - 194} REMARK 3 ORIGIN FOR THE GROUP (A): -36.7419 -7.8254 8.3279 REMARK 3 T TENSOR REMARK 3 T11: -0.0850 T22: -0.0024 REMARK 3 T33: -0.0174 T12: 0.0409 REMARK 3 T13: 0.0200 T23: 0.0140 REMARK 3 L TENSOR REMARK 3 L11: 2.3806 L22: 1.0450 REMARK 3 L33: 3.1518 L12: -0.0382 REMARK 3 L13: -0.0195 L23: 0.1308 REMARK 3 S TENSOR REMARK 3 S11: 0.0134 S12: -0.0322 S13: 0.1366 REMARK 3 S21: -0.1627 S22: 0.0213 S23: 0.0643 REMARK 3 S31: -0.3993 S32: -0.3803 S33: -0.0346 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: {A|195 - 287} REMARK 3 ORIGIN FOR THE GROUP (A): -22.7154 -18.5660 14.2901 REMARK 3 T TENSOR REMARK 3 T11: -0.1366 T22: -0.0491 REMARK 3 T33: -0.0390 T12: -0.0335 REMARK 3 T13: 0.0115 T23: 0.0115 REMARK 3 L TENSOR REMARK 3 L11: 1.2685 L22: 1.1380 REMARK 3 L33: 2.2492 L12: -0.0038 REMARK 3 L13: -0.1608 L23: -0.4375 REMARK 3 S TENSOR REMARK 3 S11: -0.0267 S12: -0.1772 S13: -0.0888 REMARK 3 S21: 0.0350 S22: 0.0581 S23: 0.1221 REMARK 3 S31: -0.0202 S32: -0.0710 S33: -0.0314 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: {A|288 - 327} REMARK 3 ORIGIN FOR THE GROUP (A): -24.9166 -34.0041 26.1054 REMARK 3 T TENSOR REMARK 3 T11: -0.1053 T22: 0.0316 REMARK 3 T33: 0.0181 T12: -0.1062 REMARK 3 T13: 0.0082 T23: 0.1520 REMARK 3 L TENSOR REMARK 3 L11: 3.8550 L22: 2.5843 REMARK 3 L33: 0.7486 L12: 1.2889 REMARK 3 L13: 0.3862 L23: -1.4872 REMARK 3 S TENSOR REMARK 3 S11: -0.0438 S12: -0.5442 S13: -0.5442 REMARK 3 S21: 0.1423 S22: 0.2281 S23: 0.1359 REMARK 3 S31: 0.5442 S32: -0.3430 S33: -0.1843 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: {A|328 - 389} REMARK 3 ORIGIN FOR THE GROUP (A): -20.8811 -20.2480 17.9182 REMARK 3 T TENSOR REMARK 3 T11: -0.0924 T22: -0.0220 REMARK 3 T33: -0.0180 T12: -0.0170 REMARK 3 T13: 0.0118 T23: 0.0106 REMARK 3 L TENSOR REMARK 3 L11: 1.4887 L22: 0.8039 REMARK 3 L33: 2.1803 L12: -0.2496 REMARK 3 L13: 0.0270 L23: -0.5377 REMARK 3 S TENSOR REMARK 3 S11: -0.0164 S12: -0.3177 S13: -0.0967 REMARK 3 S21: 0.0655 S22: 0.0785 S23: 0.0419 REMARK 3 S31: -0.1288 S32: -0.0455 S33: -0.0621 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5MLH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 06-DEC-16. REMARK 100 THE DEPOSITION ID IS D_1200002642. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-MAR-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.873 REMARK 200 MONOCHROMATOR : SI111 REMARK 200 OPTICS : KB REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 38252 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.860 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 12.88 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 27.3800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.86 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.93 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.7 REMARK 200 DATA REDUNDANCY IN SHELL : 10.98 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.710 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2V6F REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.33 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.48 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M BIS TRIS PROPANE, 5% GLYCEROL, REMARK 280 AND 16.5% TO 19% PEG 5K MME, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 69.10000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 39.76000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 39.76000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 103.65000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 39.76000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 39.76000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 34.55000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 39.76000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 39.76000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 103.65000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 39.76000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 39.76000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 34.55000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 69.10000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1800 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14930 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -29.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 535 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 TRP A 3 REMARK 465 TRP A 4 REMARK 465 TRP A 5 REMARK 465 ALA A 6 REMARK 465 GLY A 7 REMARK 465 ALA A 8 REMARK 465 ILE A 9 REMARK 465 GLY A 10 REMARK 465 ALA A 11 REMARK 465 ALA A 12 REMARK 465 LYS A 13 REMARK 465 LYS A 14 REMARK 465 ARG A 15 REMARK 465 SER A 16 REMARK 465 ASP A 17 REMARK 465 GLU A 18 REMARK 465 ASP A 19 REMARK 465 GLU A 20 REMARK 465 ALA A 21 REMARK 465 LEU A 22 REMARK 465 PRO A 23 REMARK 465 LYS A 24 REMARK 465 HIS A 25 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLU A 306 C - N - CA ANGL. DEV. = 17.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 144 -124.52 -121.58 REMARK 500 LYS A 174 47.17 -84.80 REMARK 500 SER A 210 101.85 -179.82 REMARK 500 GLU A 304 -3.06 -53.76 REMARK 500 GLU A 306 -35.41 -160.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 692 DISTANCE = 7.09 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 401 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 252 OD2 REMARK 620 2 HOH A 512 O 134.3 REMARK 620 3 HOH A 669 O 111.0 114.5 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue XOG A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NAP A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 405 DBREF 5MLH A 1 389 UNP D6N9X1 D6N9X1_PLAMJ 1 389 SEQRES 1 A 389 MET SER TRP TRP TRP ALA GLY ALA ILE GLY ALA ALA LYS SEQRES 2 A 389 LYS ARG SER ASP GLU ASP GLU ALA LEU PRO LYS HIS SER SEQRES 3 A 389 SER VAL ALA LEU ILE VAL GLY VAL THR GLY ILE VAL GLY SEQRES 4 A 389 ASN SER LEU ALA GLU ILE LEU PRO LEU ALA ASP THR PRO SEQRES 5 A 389 SER GLY PRO TRP LYS VAL TYR GLY VAL ALA ARG ARG PRO SEQRES 6 A 389 ARG PRO ALA TRP ASN GLU ASP ASN PRO ILE ASN TYR ILE SEQRES 7 A 389 ARG CYS ASP ILE SER ASP PRO LYS ASP THR GLN GLU LYS SEQRES 8 A 389 LEU SER PRO LEU THR ASP ILE THR HIS VAL PHE TYR VAL SEQRES 9 A 389 THR TRP ALA ASN ARG SER THR GLU VAL GLU ARG CYS GLU SEQRES 10 A 389 ALA ASN GLY LYS MET LEU LYS ASN VAL LEU ASP VAL VAL SEQRES 11 A 389 ILE PRO ASN CYS PRO ASP LEU LYS HIS ILE SER LEU GLN SEQRES 12 A 389 THR GLY ARG LYS HIS TYR VAL GLY PRO PHE GLU LEU ILE SEQRES 13 A 389 GLY LYS ILE GLU THR HIS ASP PRO PRO PHE THR GLU ASP SEQRES 14 A 389 LEU PRO ARG LEU LYS PHE ASP ASN PHE TYR TYR THR GLN SEQRES 15 A 389 GLU ASP LEU LEU PHE GLU GLU VAL GLU LYS LYS GLU GLY SEQRES 16 A 389 LEU THR TRP SER VAL HIS ARG PRO GLY ASN ILE PHE GLY SEQRES 17 A 389 PHE SER PRO TYR SER MET MET ASN LEU VAL GLY THR LEU SEQRES 18 A 389 CYS VAL TYR ALA ALA ILE CYS LYS HIS GLU GLY LYS VAL SEQRES 19 A 389 LEU ARG PHE PRO GLY CYS LYS ALA ALA TRP ASP GLY TYR SEQRES 20 A 389 SER ASP CYS SER ASP ALA ASP LEU ILE ALA GLU HIS HIS SEQRES 21 A 389 ILE TRP ALA ALA VAL ASP PRO TYR ALA LYS ASN GLU ALA SEQRES 22 A 389 PHE ASN VAL SER ASN GLY ASP VAL PHE LYS TRP LYS HIS SEQRES 23 A 389 PHE TRP LYS VAL LEU ALA GLU GLN PHE GLY VAL GLU CYS SEQRES 24 A 389 GLY GLU TYR GLU GLU GLY GLU ASN LEU LYS LEU GLN ASP SEQRES 25 A 389 LEU MET LYS GLY LYS GLU PRO VAL TRP GLU GLU ILE VAL SEQRES 26 A 389 ARG GLU ASN GLY LEU ALA SER THR ASN LEU GLU ASP VAL SEQRES 27 A 389 ALA VAL TRP TRP PHE SER ASP ALA VAL LEU ASP ILE PRO SEQRES 28 A 389 CYS PRO LEU ASP SER MET ASN LYS SER LYS GLU HIS GLY SEQRES 29 A 389 PHE LEU GLY PHE ARG ASN SER LYS ASN SER PHE ILE SER SEQRES 30 A 389 TRP ILE ASP LYS ALA LYS ALA TYR LYS ILE VAL PRO HET NA A 401 1 HET XOG A 402 12 HET GOL A 403 6 HET NAP A 404 48 HET CA A 405 1 HETNAM NA SODIUM ION HETNAM XOG (2E,6E)-2,6-DIMETHYLOCTA-2,6-DIENEDIAL HETNAM GOL GLYCEROL HETNAM NAP NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE HETNAM CA CALCIUM ION HETSYN XOG 8-OXOGERANIAL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN NAP 2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE FORMUL 2 NA NA 1+ FORMUL 3 XOG C10 H14 O2 FORMUL 4 GOL C3 H8 O3 FORMUL 5 NAP C21 H28 N7 O17 P3 FORMUL 6 CA CA 2+ FORMUL 7 HOH *192(H2 O) HELIX 1 AA1 VAL A 38 LEU A 46 1 9 HELIX 2 AA2 PRO A 67 GLU A 71 5 5 HELIX 3 AA3 ASP A 84 SER A 93 1 10 HELIX 4 AA4 THR A 111 CYS A 134 1 24 HELIX 5 AA5 ARG A 146 GLY A 151 1 6 HELIX 6 AA6 PRO A 152 ILE A 156 5 5 HELIX 7 AA7 ASN A 177 GLU A 191 1 15 HELIX 8 AA8 ASN A 216 GLU A 231 1 16 HELIX 9 AA9 CYS A 240 GLY A 246 1 7 HELIX 10 AB1 ALA A 253 ASP A 266 1 14 HELIX 11 AB2 PRO A 267 LYS A 270 5 4 HELIX 12 AB3 LYS A 283 PHE A 295 1 13 HELIX 13 AB4 LYS A 309 MET A 314 1 6 HELIX 14 AB5 LYS A 317 ASN A 328 1 12 HELIX 15 AB6 ASN A 334 ALA A 339 1 6 HELIX 16 AB7 VAL A 340 ASP A 349 1 10 HELIX 17 AB8 MET A 357 HIS A 363 1 7 HELIX 18 AB9 ASN A 370 TYR A 385 1 16 SHEET 1 AA1 7 ASN A 76 ARG A 79 0 SHEET 2 AA1 7 TRP A 56 ALA A 62 1 N VAL A 58 O ASN A 76 SHEET 3 AA1 7 SER A 27 VAL A 32 1 N ALA A 29 O TYR A 59 SHEET 4 AA1 7 HIS A 100 TYR A 103 1 O PHE A 102 N LEU A 30 SHEET 5 AA1 7 HIS A 139 GLN A 143 1 O SER A 141 N VAL A 101 SHEET 6 AA1 7 THR A 197 PRO A 203 1 O SER A 199 N LEU A 142 SHEET 7 AA1 7 GLU A 272 VAL A 276 1 O PHE A 274 N VAL A 200 SHEET 1 AA2 2 ILE A 206 PHE A 207 0 SHEET 2 AA2 2 SER A 251 ASP A 252 1 O SER A 251 N PHE A 207 LINK OH TYR A 179 CA CA A 405 1555 1555 2.96 LINK OD2 ASP A 252 NA NA A 401 1555 1555 2.53 LINK NA NA A 401 O HOH A 512 1555 1555 3.18 LINK NA NA A 401 O HOH A 669 1555 1555 3.04 CISPEP 1 GLY A 54 PRO A 55 0 -1.23 CISPEP 2 PRO A 164 PRO A 165 0 0.81 CISPEP 3 GLY A 305 GLU A 306 0 -16.65 SITE 1 AC1 3 ASP A 252 ARG A 369 HOH A 669 SITE 1 AC2 12 LYS A 147 PHE A 153 ASN A 205 MET A 215 SITE 2 AC2 12 VAL A 347 ILE A 350 PRO A 351 CYS A 352 SITE 3 AC2 12 CA A 405 HOH A 508 HOH A 546 HOH A 656 SITE 1 AC3 6 LYS A 174 GLN A 294 PHE A 295 GLY A 296 SITE 2 AC3 6 LYS A 383 PRO A 389 SITE 1 AC4 33 GLY A 33 VAL A 34 THR A 35 GLY A 36 SITE 2 AC4 33 ILE A 37 ALA A 62 ARG A 63 ARG A 64 SITE 3 AC4 33 CYS A 80 ASP A 81 ILE A 82 VAL A 104 SITE 4 AC4 33 THR A 105 TRP A 106 GLN A 143 THR A 144 SITE 5 AC4 33 TYR A 179 PRO A 203 GLY A 204 ILE A 206 SITE 6 AC4 33 SER A 213 MET A 214 MET A 215 CA A 405 SITE 7 AC4 33 HOH A 503 HOH A 522 HOH A 526 HOH A 542 SITE 8 AC4 33 HOH A 543 HOH A 564 HOH A 573 HOH A 602 SITE 9 AC4 33 HOH A 617 SITE 1 AC5 6 GLY A 145 ARG A 146 LYS A 147 TYR A 179 SITE 2 AC5 6 XOG A 402 NAP A 404 CRYST1 79.520 79.520 138.200 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012575 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012575 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007236 0.00000