HEADER OXIDOREDUCTASE 07-DEC-16 5MLR TITLE PLANTAGO MAJOR MULTIFUNCTIONAL OXIDOREDUCTASE V150M MUTANT IN COMPLEX TITLE 2 WITH CITRAL AND NADP+ COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROGESTERONE 5-BETA-REDUCTASE; COMPND 3 CHAIN: A; COMPND 4 EC: 1.1.1.145; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PLANTAGO MAJOR; SOURCE 3 ORGANISM_COMMON: COMMON PLANTAIN; SOURCE 4 ORGANISM_TAXID: 29818; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS PROGESTERONE REDUCTASE, IRIDOID SYNTHASE, SDR, ENZYME EVOLUTION, KEYWDS 2 OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR R.FELLOWS,C.M.RUSSO,S.G.LEE,J.M.JEZ,J.D.CHISHOLM,C.ZUBIETA,M.NANAO REVDAT 3 17-JAN-24 5MLR 1 COMPND LINK REVDAT 2 17-OCT-18 5MLR 1 COMPND JRNL REVDAT 1 01-AUG-18 5MLR 0 JRNL AUTH R.FELLOWS,C.M.RUSSO,C.S.SILVA,S.G.LEE,J.M.JEZ,J.D.CHISHOLM, JRNL AUTH 2 C.ZUBIETA,M.H.NANAO JRNL TITL A MULTISUBSTRATE REDUCTASE FROM PLANTAGO MAJOR: JRNL TITL 2 STRUCTURE-FUNCTION IN THE SHORT CHAIN REDUCTASE SUPERFAMILY. JRNL REF SCI REP V. 8 14796 2018 JRNL REFN ESSN 2045-2322 JRNL PMID 30287897 JRNL DOI 10.1038/S41598-018-32967-1 REMARK 2 REMARK 2 RESOLUTION. 1.46 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.2 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.46 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.20 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 76267 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.153 REMARK 3 R VALUE (WORKING SET) : 0.153 REMARK 3 FREE R VALUE : 0.169 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.030 REMARK 3 FREE R VALUE TEST SET COUNT : 3834 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 1.46 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 1.50 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 85.19 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 4799 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2305 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 4586 REMARK 3 BIN R VALUE (WORKING SET) : 0.2299 REMARK 3 BIN FREE R VALUE : 0.2437 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.44 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 213 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2912 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 73 REMARK 3 SOLVENT ATOMS : 525 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 20.64 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.75 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.46540 REMARK 3 B22 (A**2) : -1.46540 REMARK 3 B33 (A**2) : 2.93070 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.159 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.059 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.057 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.053 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.053 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.970 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.964 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 3120 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 4262 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1080 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 82 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 480 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 3120 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : 2 ; 5.000 ; SEMIHARMONIC REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 391 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : 9 ; 1.000 ; HARMONIC REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 4148 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.00 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 4.39 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 15.63 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: {A|26 - 187} REMARK 3 ORIGIN FOR THE GROUP (A): -27.9988 -3.5450 19.2701 REMARK 3 T TENSOR REMARK 3 T11: -0.0044 T22: -0.0404 REMARK 3 T33: -0.0522 T12: 0.0082 REMARK 3 T13: 0.0081 T23: -0.0259 REMARK 3 L TENSOR REMARK 3 L11: 0.8792 L22: 0.5441 REMARK 3 L33: 1.2461 L12: 0.0448 REMARK 3 L13: 0.1678 L23: -0.0257 REMARK 3 S TENSOR REMARK 3 S11: -0.0277 S12: -0.1545 S13: 0.1128 REMARK 3 S21: 0.0860 S22: 0.0163 S23: -0.0076 REMARK 3 S31: -0.3120 S32: -0.0784 S33: 0.0114 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: {A|188 - 194} REMARK 3 ORIGIN FOR THE GROUP (A): -31.8419 11.7235 12.2749 REMARK 3 T TENSOR REMARK 3 T11: 0.2303 T22: -0.0895 REMARK 3 T33: -0.0242 T12: 0.0714 REMARK 3 T13: 0.0302 T23: -0.0252 REMARK 3 L TENSOR REMARK 3 L11: 0.7613 L22: 1.1215 REMARK 3 L33: 0.5360 L12: -0.4884 REMARK 3 L13: 0.7048 L23: 0.3520 REMARK 3 S TENSOR REMARK 3 S11: 0.0051 S12: -0.0164 S13: 0.0719 REMARK 3 S21: -0.0047 S22: -0.0136 S23: -0.0312 REMARK 3 S31: -0.0770 S32: -0.0669 S33: 0.0085 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: {A|195 - 300} REMARK 3 ORIGIN FOR THE GROUP (A): -21.9663 -20.4315 14.9695 REMARK 3 T TENSOR REMARK 3 T11: -0.0657 T22: -0.0325 REMARK 3 T33: -0.0309 T12: -0.0221 REMARK 3 T13: 0.0054 T23: 0.0047 REMARK 3 L TENSOR REMARK 3 L11: 0.7201 L22: 0.5557 REMARK 3 L33: 0.8952 L12: -0.0730 REMARK 3 L13: 0.1131 L23: -0.0360 REMARK 3 S TENSOR REMARK 3 S11: -0.0035 S12: -0.0959 S13: -0.0712 REMARK 3 S21: -0.0020 S22: 0.0214 S23: 0.0049 REMARK 3 S31: -0.0228 S32: -0.0384 S33: -0.0180 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: {A|301 - 311} REMARK 3 ORIGIN FOR THE GROUP (A): -32.9227 -36.9941 17.9893 REMARK 3 T TENSOR REMARK 3 T11: -0.0200 T22: 0.0380 REMARK 3 T33: 0.0544 T12: -0.1343 REMARK 3 T13: -0.0033 T23: 0.0559 REMARK 3 L TENSOR REMARK 3 L11: 0.2660 L22: 0.3093 REMARK 3 L33: 0.6460 L12: -0.9813 REMARK 3 L13: -0.1628 L23: 0.9665 REMARK 3 S TENSOR REMARK 3 S11: -0.0204 S12: -0.0695 S13: -0.1417 REMARK 3 S21: -0.0476 S22: 0.0483 S23: 0.0459 REMARK 3 S31: 0.0408 S32: -0.1588 S33: -0.0279 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: {A|312 - 327} REMARK 3 ORIGIN FOR THE GROUP (A): -25.1405 -31.1099 36.1027 REMARK 3 T TENSOR REMARK 3 T11: -0.0454 T22: 0.1261 REMARK 3 T33: -0.0400 T12: -0.0297 REMARK 3 T13: 0.0271 T23: 0.1231 REMARK 3 L TENSOR REMARK 3 L11: 0.2836 L22: 3.3470 REMARK 3 L33: 1.0266 L12: 2.1481 REMARK 3 L13: -1.1851 L23: -0.7853 REMARK 3 S TENSOR REMARK 3 S11: -0.0265 S12: -0.2007 S13: -0.1304 REMARK 3 S21: 0.2982 S22: 0.1079 S23: 0.1696 REMARK 3 S31: 0.2763 S32: -0.0839 S33: -0.0813 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: {A|328 - 389} REMARK 3 ORIGIN FOR THE GROUP (A): -20.7292 -20.2658 17.9407 REMARK 3 T TENSOR REMARK 3 T11: -0.0527 T22: -0.0038 REMARK 3 T33: -0.0112 T12: -0.0185 REMARK 3 T13: 0.0062 T23: 0.0077 REMARK 3 L TENSOR REMARK 3 L11: 0.5465 L22: 0.2285 REMARK 3 L33: 1.0478 L12: -0.1233 REMARK 3 L13: 0.0548 L23: 0.0179 REMARK 3 S TENSOR REMARK 3 S11: 0.0046 S12: -0.1419 S13: -0.0454 REMARK 3 S21: 0.0200 S22: 0.0322 S23: 0.0118 REMARK 3 S31: -0.0407 S32: -0.0071 S33: -0.0368 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5MLR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 07-DEC-16. REMARK 100 THE DEPOSITION ID IS D_1200002650. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-JAN-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.8726 REMARK 200 MONOCHROMATOR : SI111 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 76281 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.460 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 200 DATA REDUNDANCY : 6.900 REMARK 200 R MERGE (I) : 0.05600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.46 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.51 REMARK 200 COMPLETENESS FOR SHELL (%) : 88.6 REMARK 200 DATA REDUNDANCY IN SHELL : 5.87 REMARK 200 R MERGE FOR SHELL (I) : 1.05700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.530 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2V6F REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.27 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.63 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M BIS TRIS PROPANE, 5% GLYCEROL, REMARK 280 AND 16.5%-19% PEG 5K MME, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 68.80650 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 39.75500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 39.75500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 103.20975 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 39.75500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 39.75500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 34.40325 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 39.75500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 39.75500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 103.20975 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 39.75500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 39.75500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 34.40325 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 68.80650 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5400 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28050 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -88.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 539 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1011 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -21 REMARK 465 GLY A -20 REMARK 465 HIS A -19 REMARK 465 HIS A -18 REMARK 465 HIS A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 ASP A -13 REMARK 465 TYR A -12 REMARK 465 ASP A -11 REMARK 465 ILE A -10 REMARK 465 PRO A -9 REMARK 465 THR A -8 REMARK 465 THR A -7 REMARK 465 GLU A -6 REMARK 465 ASN A -5 REMARK 465 LEU A -4 REMARK 465 TYR A -3 REMARK 465 PHE A -2 REMARK 465 GLN A -1 REMARK 465 GLY A 0 REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 TRP A 3 REMARK 465 TRP A 4 REMARK 465 TRP A 5 REMARK 465 ALA A 6 REMARK 465 GLY A 7 REMARK 465 ALA A 8 REMARK 465 ILE A 9 REMARK 465 GLY A 10 REMARK 465 ALA A 11 REMARK 465 ALA A 12 REMARK 465 LYS A 13 REMARK 465 LYS A 14 REMARK 465 ARG A 15 REMARK 465 SER A 16 REMARK 465 ASP A 17 REMARK 465 GLU A 18 REMARK 465 ASP A 19 REMARK 465 GLU A 20 REMARK 465 ALA A 21 REMARK 465 LEU A 22 REMARK 465 PRO A 23 REMARK 465 LYS A 24 REMARK 465 HIS A 25 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 144 -123.44 -121.66 REMARK 500 LYS A 174 52.14 -90.55 REMARK 500 SER A 210 100.11 176.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1019 DISTANCE = 5.88 ANGSTROMS REMARK 525 HOH A1020 DISTANCE = 5.90 ANGSTROMS REMARK 525 HOH A1021 DISTANCE = 5.93 ANGSTROMS REMARK 525 HOH A1022 DISTANCE = 6.09 ANGSTROMS REMARK 525 HOH A1023 DISTANCE = 6.14 ANGSTROMS REMARK 525 HOH A1024 DISTANCE = 6.27 ANGSTROMS REMARK 525 HOH A1025 DISTANCE = 6.50 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 402 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 252 OD2 REMARK 620 2 HOH A 772 O 120.8 REMARK 620 3 HOH A 886 O 104.1 103.2 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 403 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 545 O REMARK 620 2 HOH A 651 O 136.3 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GRQ A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GRQ A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NAP A 406 DBREF 5MLR A 1 389 UNP D6N9X1 D6N9X1_PLAMJ 1 389 SEQADV 5MLR MET A -21 UNP D6N9X1 INITIATING METHIONINE SEQADV 5MLR GLY A -20 UNP D6N9X1 EXPRESSION TAG SEQADV 5MLR HIS A -19 UNP D6N9X1 EXPRESSION TAG SEQADV 5MLR HIS A -18 UNP D6N9X1 EXPRESSION TAG SEQADV 5MLR HIS A -17 UNP D6N9X1 EXPRESSION TAG SEQADV 5MLR HIS A -16 UNP D6N9X1 EXPRESSION TAG SEQADV 5MLR HIS A -15 UNP D6N9X1 EXPRESSION TAG SEQADV 5MLR HIS A -14 UNP D6N9X1 EXPRESSION TAG SEQADV 5MLR ASP A -13 UNP D6N9X1 EXPRESSION TAG SEQADV 5MLR TYR A -12 UNP D6N9X1 EXPRESSION TAG SEQADV 5MLR ASP A -11 UNP D6N9X1 EXPRESSION TAG SEQADV 5MLR ILE A -10 UNP D6N9X1 EXPRESSION TAG SEQADV 5MLR PRO A -9 UNP D6N9X1 EXPRESSION TAG SEQADV 5MLR THR A -8 UNP D6N9X1 EXPRESSION TAG SEQADV 5MLR THR A -7 UNP D6N9X1 EXPRESSION TAG SEQADV 5MLR GLU A -6 UNP D6N9X1 EXPRESSION TAG SEQADV 5MLR ASN A -5 UNP D6N9X1 EXPRESSION TAG SEQADV 5MLR LEU A -4 UNP D6N9X1 EXPRESSION TAG SEQADV 5MLR TYR A -3 UNP D6N9X1 EXPRESSION TAG SEQADV 5MLR PHE A -2 UNP D6N9X1 EXPRESSION TAG SEQADV 5MLR GLN A -1 UNP D6N9X1 EXPRESSION TAG SEQADV 5MLR GLY A 0 UNP D6N9X1 EXPRESSION TAG SEQADV 5MLR MET A 150 UNP D6N9X1 VAL 150 ENGINEERED MUTATION SEQRES 1 A 411 MET GLY HIS HIS HIS HIS HIS HIS ASP TYR ASP ILE PRO SEQRES 2 A 411 THR THR GLU ASN LEU TYR PHE GLN GLY MET SER TRP TRP SEQRES 3 A 411 TRP ALA GLY ALA ILE GLY ALA ALA LYS LYS ARG SER ASP SEQRES 4 A 411 GLU ASP GLU ALA LEU PRO LYS HIS SER SER VAL ALA LEU SEQRES 5 A 411 ILE VAL GLY VAL THR GLY ILE VAL GLY ASN SER LEU ALA SEQRES 6 A 411 GLU ILE LEU PRO LEU ALA ASP THR PRO SER GLY PRO TRP SEQRES 7 A 411 LYS VAL TYR GLY VAL ALA ARG ARG PRO ARG PRO ALA TRP SEQRES 8 A 411 ASN GLU ASP ASN PRO ILE ASN TYR ILE ARG CYS ASP ILE SEQRES 9 A 411 SER ASP PRO LYS ASP THR GLN GLU LYS LEU SER PRO LEU SEQRES 10 A 411 THR ASP ILE THR HIS VAL PHE TYR VAL THR TRP ALA ASN SEQRES 11 A 411 ARG SER THR GLU VAL GLU ARG CYS GLU ALA ASN GLY LYS SEQRES 12 A 411 MET LEU LYS ASN VAL LEU ASP VAL VAL ILE PRO ASN CYS SEQRES 13 A 411 PRO ASP LEU LYS HIS ILE SER LEU GLN THR GLY ARG LYS SEQRES 14 A 411 HIS TYR MET GLY PRO PHE GLU LEU ILE GLY LYS ILE GLU SEQRES 15 A 411 THR HIS ASP PRO PRO PHE THR GLU ASP LEU PRO ARG LEU SEQRES 16 A 411 LYS PHE ASP ASN PHE TYR TYR THR GLN GLU ASP LEU LEU SEQRES 17 A 411 PHE GLU GLU VAL GLU LYS LYS GLU GLY LEU THR TRP SER SEQRES 18 A 411 VAL HIS ARG PRO GLY ASN ILE PHE GLY PHE SER PRO TYR SEQRES 19 A 411 SER MET MET ASN LEU VAL GLY THR LEU CYS VAL TYR ALA SEQRES 20 A 411 ALA ILE CYS LYS HIS GLU GLY LYS VAL LEU ARG PHE PRO SEQRES 21 A 411 GLY CYS LYS ALA ALA TRP ASP GLY TYR SER ASP CYS SER SEQRES 22 A 411 ASP ALA ASP LEU ILE ALA GLU HIS HIS ILE TRP ALA ALA SEQRES 23 A 411 VAL ASP PRO TYR ALA LYS ASN GLU ALA PHE ASN VAL SER SEQRES 24 A 411 ASN GLY ASP VAL PHE LYS TRP LYS HIS PHE TRP LYS VAL SEQRES 25 A 411 LEU ALA GLU GLN PHE GLY VAL GLU CYS GLY GLU TYR GLU SEQRES 26 A 411 GLU GLY GLU ASN LEU LYS LEU GLN ASP LEU MET LYS GLY SEQRES 27 A 411 LYS GLU PRO VAL TRP GLU GLU ILE VAL ARG GLU ASN GLY SEQRES 28 A 411 LEU ALA SER THR ASN LEU GLU ASP VAL ALA VAL TRP TRP SEQRES 29 A 411 PHE SER ASP ALA VAL LEU ASP ILE PRO CYS PRO LEU ASP SEQRES 30 A 411 SER MET ASN LYS SER LYS GLU HIS GLY PHE LEU GLY PHE SEQRES 31 A 411 ARG ASN SER LYS ASN SER PHE ILE SER TRP ILE ASP LYS SEQRES 32 A 411 ALA LYS ALA TYR LYS ILE VAL PRO HET CL A 401 1 HET NA A 402 1 HET NA A 403 1 HET GRQ A 404 11 HET GRQ A 405 11 HET NAP A 406 48 HETNAM CL CHLORIDE ION HETNAM NA SODIUM ION HETNAM GRQ GERANALDEHYDE HETNAM NAP NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE HETSYN NAP 2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE FORMUL 2 CL CL 1- FORMUL 3 NA 2(NA 1+) FORMUL 5 GRQ 2(C10 H16 O) FORMUL 7 NAP C21 H28 N7 O17 P3 FORMUL 8 HOH *525(H2 O) HELIX 1 AA1 VAL A 38 LEU A 46 1 9 HELIX 2 AA2 PRO A 67 GLU A 71 5 5 HELIX 3 AA3 ASP A 84 SER A 93 1 10 HELIX 4 AA4 THR A 111 CYS A 134 1 24 HELIX 5 AA5 ARG A 146 GLY A 151 1 6 HELIX 6 AA6 PRO A 152 ILE A 156 5 5 HELIX 7 AA7 ASN A 177 GLU A 191 1 15 HELIX 8 AA8 ASN A 216 GLY A 232 1 17 HELIX 9 AA9 CYS A 240 GLY A 246 1 7 HELIX 10 AB1 ALA A 253 ASP A 266 1 14 HELIX 11 AB2 PRO A 267 LYS A 270 5 4 HELIX 12 AB3 LYS A 283 GLY A 296 1 14 HELIX 13 AB4 LYS A 309 MET A 314 1 6 HELIX 14 AB5 LYS A 317 GLY A 329 1 13 HELIX 15 AB6 ASN A 334 ALA A 339 1 6 HELIX 16 AB7 VAL A 340 ASP A 349 1 10 HELIX 17 AB8 MET A 357 HIS A 363 1 7 HELIX 18 AB9 ASN A 370 TYR A 385 1 16 SHEET 1 AA1 7 ASN A 76 ARG A 79 0 SHEET 2 AA1 7 TRP A 56 ALA A 62 1 N GLY A 60 O ILE A 78 SHEET 3 AA1 7 SER A 27 VAL A 32 1 N ALA A 29 O LYS A 57 SHEET 4 AA1 7 HIS A 100 TYR A 103 1 O PHE A 102 N LEU A 30 SHEET 5 AA1 7 HIS A 139 GLN A 143 1 O SER A 141 N TYR A 103 SHEET 6 AA1 7 THR A 197 PRO A 203 1 O SER A 199 N LEU A 142 SHEET 7 AA1 7 GLU A 272 VAL A 276 1 O PHE A 274 N VAL A 200 SHEET 1 AA2 2 ILE A 206 PHE A 207 0 SHEET 2 AA2 2 SER A 251 ASP A 252 1 O SER A 251 N PHE A 207 LINK OD2 ASP A 252 NA NA A 402 1555 1555 2.68 LINK NA NA A 402 O HOH A 772 1555 1555 2.62 LINK NA NA A 402 O HOH A 886 1555 1555 2.95 LINK NA NA A 403 O HOH A 545 1555 1555 3.19 LINK NA NA A 403 O HOH A 651 1555 7555 3.12 CISPEP 1 GLY A 54 PRO A 55 0 2.29 CISPEP 2 PRO A 164 PRO A 165 0 2.61 SITE 1 AC1 5 GLY A 145 ARG A 146 LYS A 147 TYR A 179 SITE 2 AC1 5 NAP A 406 SITE 1 AC2 4 ASP A 252 ARG A 369 HOH A 772 HOH A 886 SITE 1 AC3 3 PHE A 282 LYS A 283 HIS A 286 SITE 1 AC4 14 LYS A 147 PHE A 153 ILE A 156 ASN A 205 SITE 2 AC4 14 MET A 215 PHE A 343 ALA A 346 VAL A 347 SITE 3 AC4 14 ASP A 349 ILE A 350 GRQ A 405 HOH A 526 SITE 4 AC4 14 HOH A 934 HOH A 965 SITE 1 AC5 14 LYS A 147 MET A 150 PHE A 153 ASN A 205 SITE 2 AC5 14 MET A 215 PHE A 343 ALA A 346 VAL A 347 SITE 3 AC5 14 ILE A 350 CYS A 352 GRQ A 404 HOH A 520 SITE 4 AC5 14 HOH A 526 HOH A 940 SITE 1 AC6 35 GLY A 33 VAL A 34 THR A 35 GLY A 36 SITE 2 AC6 35 ILE A 37 ALA A 62 ARG A 63 ARG A 64 SITE 3 AC6 35 CYS A 80 ASP A 81 ILE A 82 VAL A 104 SITE 4 AC6 35 THR A 105 TRP A 106 GLN A 143 THR A 144 SITE 5 AC6 35 TYR A 179 PRO A 203 GLY A 204 ILE A 206 SITE 6 AC6 35 SER A 213 MET A 214 MET A 215 CL A 401 SITE 7 AC6 35 HOH A 527 HOH A 562 HOH A 571 HOH A 592 SITE 8 AC6 35 HOH A 607 HOH A 637 HOH A 643 HOH A 660 SITE 9 AC6 35 HOH A 679 HOH A 766 HOH A 790 CRYST1 79.510 79.510 137.613 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012577 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012577 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007267 0.00000