HEADER TRANSPORT PROTEIN 07-DEC-16 5MLT TITLE STRUCTURAL CHARACTERIZATION OF A CARBOHYDRATE SUBSTRATE BINDING TITLE 2 PROTEIN FROM STREPTOCOCCUS PNEUMONIAE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ABC TRANSPORTER, SUBSTRATE-BINDING PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOCOCCUS PNEUMONIAE SEROTYPE 4 (STRAIN SOURCE 3 ATCC BAA-334 / TIGR4); SOURCE 4 ORGANISM_TAXID: 170187; SOURCE 5 GENE: SP_0092; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS SUBSTRATE BINDING PROTEIN CARBOHYDRATE PERIPLASMIC BINDING PROTEIN KEYWDS 2 TYPE 2 SUPERFAMILY, TRANSPORT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR S.CULURGIONI,M.TANG,M.A.WALSH REVDAT 3 23-OCT-24 5MLT 1 LINK REVDAT 2 25-JAN-17 5MLT 1 JRNL REVDAT 1 11-JAN-17 5MLT 0 JRNL AUTH S.CULURGIONI,M.TANG,M.A.WALSH JRNL TITL STRUCTURAL CHARACTERIZATION OF THE STREPTOCOCCUS PNEUMONIAE JRNL TITL 2 CARBOHYDRATE SUBSTRATE-BINDING PROTEIN SP0092. JRNL REF ACTA CRYSTALLOGR F STRUCT V. 73 54 2017 JRNL REF 2 BIOL COMMUN JRNL REFN ESSN 2053-230X JRNL PMID 28045395 JRNL DOI 10.1107/S2053230X16020252 REMARK 2 REMARK 2 RESOLUTION. 1.61 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0123 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.61 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.64 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 59803 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.195 REMARK 3 R VALUE (WORKING SET) : 0.193 REMARK 3 FREE R VALUE : 0.229 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3158 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.61 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.65 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4436 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.96 REMARK 3 BIN R VALUE (WORKING SET) : 0.3500 REMARK 3 BIN FREE R VALUE SET COUNT : 215 REMARK 3 BIN FREE R VALUE : 0.3600 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3582 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 3 REMARK 3 SOLVENT ATOMS : 338 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 20.01 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.23 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.095 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.096 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.068 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.029 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.961 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.948 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3680 ; 0.010 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 3516 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4990 ; 1.389 ; 1.971 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8140 ; 0.930 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 461 ; 5.870 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 176 ;39.326 ;26.648 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 641 ;12.850 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 6 ;18.735 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 549 ; 0.084 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4222 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 790 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1823 ; 1.661 ; 2.335 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1822 ; 1.659 ; 2.335 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2278 ; 2.720 ; 3.496 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2279 ; 2.719 ; 3.496 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1857 ; 2.081 ; 2.557 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1857 ; 2.081 ; 2.557 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2707 ; 3.404 ; 3.713 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 4326 ; 6.192 ;19.303 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 4213 ; 6.013 ;19.009 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.30 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5MLT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 07-DEC-16. REMARK 100 THE DEPOSITION ID IS D_1200002663. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-SEP-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : SI (111) REMARK 200 OPTICS : KB MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 V1-3-4 REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.5.29 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 62913 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.610 REMARK 200 RESOLUTION RANGE LOW (A) : 49.640 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.600 REMARK 200 R MERGE (I) : 0.02300 REMARK 200 R SYM (I) : 0.02800 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 16.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.61 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.65 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.6 REMARK 200 DATA REDUNDANCY IN SHELL : 6.90 REMARK 200 R MERGE FOR SHELL (I) : 0.44300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 4.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELXCD 2016/1 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.91 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.27 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.02 M MES PH 6.5, 0.2 M NACL, 2.5% REMARK 280 GLYCEROL AND 0.5 MM TCEP, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 52.12000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 41.27000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 52.12000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 41.27000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 15910 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 42100 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -322.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 491 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 281 NE - CZ - NH1 ANGL. DEV. = 5.0 DEGREES REMARK 500 ARG A 281 NE - CZ - NH2 ANGL. DEV. = -4.9 DEGREES REMARK 500 ARG A 297 NE - CZ - NH1 ANGL. DEV. = 4.8 DEGREES REMARK 500 ARG A 297 NE - CZ - NH2 ANGL. DEV. = -4.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 94 78.49 -119.50 REMARK 500 LYS A 124 -76.53 -130.32 REMARK 500 ALA A 154 -115.90 -164.72 REMARK 500 ASP A 276 37.68 -98.78 REMARK 500 ASN A 390 109.28 -29.62 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 501 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY A 37 N REMARK 620 2 GLY A 37 O 76.8 REMARK 620 3 HIS A 252 NE2 70.9 110.2 REMARK 620 4 GLU A 256 OE2 71.8 109.5 1.4 REMARK 620 5 HOH A 643 O 70.6 110.9 0.9 2.3 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 502 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 212 OD2 REMARK 620 2 HIS A 247 NE2 113.1 REMARK 620 3 HOH A 696 O 106.1 100.1 REMARK 620 4 HOH A 888 O 112.6 109.5 114.9 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 503 DBREF1 5MLT A 39 491 UNP A0A0H2UMY0_STRPN DBREF2 5MLT A A0A0H2UMY0 39 491 SEQADV 5MLT GLY A 37 UNP A0A0H2UMY EXPRESSION TAG SEQADV 5MLT PRO A 38 UNP A0A0H2UMY EXPRESSION TAG SEQRES 1 A 455 GLY PRO ASP LYS PRO VAL ILE LYS MSE TYR GLN ILE GLY SEQRES 2 A 455 ASP LYS PRO ASP ASN LEU ASP GLU LEU LEU ALA ASN ALA SEQRES 3 A 455 ASN LYS ILE ILE GLU GLU LYS VAL GLY ALA LYS LEU ASP SEQRES 4 A 455 ILE GLN TYR LEU GLY TRP GLY ASP TYR GLY LYS LYS MSE SEQRES 5 A 455 SER VAL ILE THR SER SER GLY GLU ASN TYR ASP ILE ALA SEQRES 6 A 455 PHE ALA ASP ASN TYR ILE VAL ASN ALA GLN LYS GLY ALA SEQRES 7 A 455 TYR ALA ASP LEU THR GLU LEU TYR LYS LYS GLU GLY LYS SEQRES 8 A 455 ASP LEU TYR LYS ALA LEU ASP PRO ALA TYR ILE LYS GLY SEQRES 9 A 455 ASN THR VAL ASN GLY LYS ILE TYR ALA VAL PRO VAL ALA SEQRES 10 A 455 ALA ASN VAL ALA SER SER GLN ASN PHE ALA PHE ASN GLY SEQRES 11 A 455 THR LEU LEU ALA LYS TYR GLY ILE ASP ILE SER GLY VAL SEQRES 12 A 455 THR SER TYR GLU THR LEU GLU PRO VAL LEU LYS GLN ILE SEQRES 13 A 455 LYS GLU LYS ALA PRO ASP VAL VAL PRO PHE ALA ILE GLY SEQRES 14 A 455 LYS VAL PHE ILE PRO SER ASP ASN PHE ASP TYR PRO VAL SEQRES 15 A 455 ALA ASN GLY LEU PRO PHE VAL ILE ASP LEU GLU GLY ASP SEQRES 16 A 455 THR THR LYS VAL VAL ASN ARG TYR GLU VAL PRO ARG PHE SEQRES 17 A 455 LYS GLU HIS LEU LYS THR LEU HIS LYS PHE TYR GLU ALA SEQRES 18 A 455 GLY TYR ILE PRO LYS ASP VAL ALA THR SER ASP THR SER SEQRES 19 A 455 PHE ASP LEU GLN GLN ASP THR TRP PHE VAL ARG GLU GLU SEQRES 20 A 455 THR VAL GLY PRO ALA ASP TYR GLY ASN SER LEU LEU SER SEQRES 21 A 455 ARG VAL ALA ASN LYS ASP ILE GLN ILE LYS PRO ILE THR SEQRES 22 A 455 ASN PHE ILE LYS LYS ASN GLN THR THR GLN VAL ALA ASN SEQRES 23 A 455 PHE VAL ILE SER ASN ASN SER LYS ASN LYS GLU LYS SER SEQRES 24 A 455 MSE GLU ILE LEU ASN LEU LEU ASN THR ASN PRO GLU LEU SEQRES 25 A 455 LEU ASN GLY LEU VAL TYR GLY PRO GLU GLY LYS ASN TRP SEQRES 26 A 455 GLU LYS ILE GLU GLY LYS GLU ASN ARG VAL ARG VAL LEU SEQRES 27 A 455 ASP GLY TYR LYS GLY ASN THR HIS MSE GLY GLY TRP ASN SEQRES 28 A 455 THR GLY ASN ASN TRP ILE LEU TYR ILE ASN GLU ASN VAL SEQRES 29 A 455 THR ASP GLN GLN ILE GLU ASN SER LYS LYS GLU LEU ALA SEQRES 30 A 455 GLU ALA LYS GLU SER PRO ALA LEU GLY PHE ILE PHE ASN SEQRES 31 A 455 THR ASP ASN VAL LYS SER GLU ILE SER ALA ILE ALA ASN SEQRES 32 A 455 THR MSE GLN GLN PHE ASP THR ALA ILE ASN THR GLY THR SEQRES 33 A 455 VAL ASP PRO ASP LYS ALA ILE PRO GLU LEU MSE GLU LYS SEQRES 34 A 455 LEU LYS SER GLU GLY ALA TYR GLU LYS VAL LEU ASN GLU SEQRES 35 A 455 MSE GLN LYS GLN TYR ASP GLU PHE LEU LYS ASN LYS LYS MODRES 5MLT MSE A 45 MET MODIFIED RESIDUE MODRES 5MLT MSE A 88 MET MODIFIED RESIDUE MODRES 5MLT MSE A 336 MET MODIFIED RESIDUE MODRES 5MLT MSE A 383 MET MODIFIED RESIDUE MODRES 5MLT MSE A 441 MET MODIFIED RESIDUE MODRES 5MLT MSE A 463 MET MODIFIED RESIDUE MODRES 5MLT MSE A 479 MET MODIFIED RESIDUE HET MSE A 45 8 HET MSE A 88 8 HET MSE A 336 8 HET MSE A 383 8 HET MSE A 441 8 HET MSE A 463 8 HET MSE A 479 8 HET ZN A 501 1 HET ZN A 502 1 HET ZN A 503 1 HETNAM MSE SELENOMETHIONINE HETNAM ZN ZINC ION FORMUL 1 MSE 7(C5 H11 N O2 SE) FORMUL 2 ZN 3(ZN 2+) FORMUL 5 HOH *338(H2 O) HELIX 1 AA1 ASN A 54 GLY A 71 1 18 HELIX 2 AA2 ASP A 83 SER A 94 1 12 HELIX 3 AA3 ASN A 105 LYS A 112 1 8 HELIX 4 AA4 GLU A 120 LYS A 124 5 5 HELIX 5 AA5 GLY A 126 ALA A 132 1 7 HELIX 6 AA6 ASP A 134 ASN A 141 1 8 HELIX 7 AA7 GLY A 166 GLY A 173 1 8 HELIX 8 AA8 SER A 181 ALA A 196 1 16 HELIX 9 AA9 VAL A 241 ALA A 257 1 17 HELIX 10 AB1 GLY A 286 TYR A 290 5 5 HELIX 11 AB2 ASN A 292 ASN A 300 1 9 HELIX 12 AB3 LYS A 314 VAL A 320 1 7 HELIX 13 AB4 ASN A 331 ASN A 343 1 13 HELIX 14 AB5 ASN A 345 TYR A 354 1 10 HELIX 15 AB6 GLY A 384 THR A 388 5 5 HELIX 16 AB7 ASN A 390 LEU A 394 5 5 HELIX 17 AB8 THR A 401 ALA A 415 1 15 HELIX 18 AB9 THR A 427 ASN A 429 5 3 HELIX 19 AC1 VAL A 430 THR A 450 1 21 HELIX 20 AC2 ASP A 454 SER A 468 1 15 HELIX 21 AC3 GLY A 470 LYS A 488 1 19 SHEET 1 AA1 5 LYS A 73 TYR A 78 0 SHEET 2 AA1 5 VAL A 42 GLN A 47 1 N ILE A 43 O LYS A 73 SHEET 3 AA1 5 ILE A 100 PHE A 102 1 O ILE A 100 N LYS A 44 SHEET 4 AA1 5 ASN A 322 ILE A 325 -1 O VAL A 324 N ALA A 101 SHEET 5 AA1 5 VAL A 150 PRO A 151 -1 N VAL A 150 O PHE A 323 SHEET 1 AA2 2 THR A 142 VAL A 143 0 SHEET 2 AA2 2 LYS A 146 ILE A 147 -1 O LYS A 146 N VAL A 143 SHEET 1 AA3 4 VAL A 200 PHE A 202 0 SHEET 2 AA3 4 TRP A 278 VAL A 285 1 O PHE A 279 N VAL A 200 SHEET 3 AA3 4 SER A 159 ASN A 165 -1 N ALA A 163 O ARG A 281 SHEET 4 AA3 4 ILE A 303 PRO A 307 -1 O GLN A 304 N PHE A 164 SHEET 1 AA4 3 PHE A 214 ASP A 215 0 SHEET 2 AA4 3 PHE A 224 ASP A 227 -1 O ILE A 226 N ASP A 215 SHEET 3 AA4 3 VAL A 235 ASN A 237 -1 O VAL A 236 N VAL A 225 SHEET 1 AA5 2 ARG A 370 VAL A 371 0 SHEET 2 AA5 2 ILE A 396 ASN A 397 1 O ILE A 396 N VAL A 371 LINK C LYS A 44 N MSE A 45 1555 1555 1.33 LINK C MSE A 45 N TYR A 46 1555 1555 1.34 LINK C LYS A 87 N MSE A 88 1555 1555 1.33 LINK C MSE A 88 N SER A 89 1555 1555 1.33 LINK C SER A 335 N MSE A 336 1555 1555 1.34 LINK C MSE A 336 N GLU A 337 1555 1555 1.33 LINK C HIS A 382 N MSE A 383 1555 1555 1.33 LINK C MSE A 383 N GLY A 384 1555 1555 1.33 LINK C THR A 440 N MSE A 441 1555 1555 1.33 LINK C MSE A 441 N GLN A 442 1555 1555 1.34 LINK C LEU A 462 N MSE A 463 1555 1555 1.32 LINK C MSE A 463 N GLU A 464 1555 1555 1.33 LINK C GLU A 478 N MSE A 479 1555 1555 1.34 LINK C MSE A 479 N GLN A 480 1555 1555 1.34 LINK N GLY A 37 ZN ZN A 501 1555 3445 2.39 LINK O GLY A 37 ZN ZN A 501 1555 3445 2.07 LINK OD2 ASP A 212 ZN ZN A 502 1555 1555 1.87 LINK NE2 HIS A 247 ZN ZN A 502 1555 1555 2.05 LINK NE2 HIS A 252 ZN ZN A 501 1555 1555 2.13 LINK OE2 GLU A 256 ZN ZN A 501 1555 1555 1.84 LINK OE2AGLU A 365 ZN ZN A 503 1555 2555 1.72 LINK ZN ZN A 501 O HOH A 643 1555 1555 2.04 LINK ZN ZN A 502 O HOH A 696 1555 1555 2.14 LINK ZN ZN A 502 O HOH A 888 1555 1555 2.02 SITE 1 AC1 4 GLY A 37 HIS A 252 GLU A 256 HOH A 643 SITE 1 AC2 4 ASP A 212 HIS A 247 HOH A 696 HOH A 888 SITE 1 AC3 3 GLU A 365 GLY A 366 GLU A 368 CRYST1 104.240 82.540 60.350 90.00 107.76 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009593 0.000000 0.003073 0.00000 SCALE2 0.000000 0.012115 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017399 0.00000