HEADER HYDROLASE 07-DEC-16 5MLW TITLE CRYSTAL STRUCTURE OF HUMAN PCNA IN COMPLEX WITH ZRANB3 APIM MOTIF TITLE 2 PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROLIFERATING CELL NUCLEAR ANTIGEN; COMPND 3 CHAIN: A, C, E; COMPND 4 SYNONYM: PCNA,CYCLIN; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: APIM MOTIF PEPTIDE; COMPND 8 CHAIN: B, D, F; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PCNA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606 KEYWDS ENDONUCLEASE, METALLOPROTEIN, PCNA, DNA-BINDING, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR A.ARIZA REVDAT 2 17-JAN-24 5MLW 1 REMARK REVDAT 1 28-JUN-17 5MLW 0 JRNL AUTH M.SEBESTA,C.D.O.COOPER,A.ARIZA,C.J.CARNIE,D.AHEL JRNL TITL STRUCTURAL INSIGHTS INTO THE FUNCTION OF ZRANB3 IN JRNL TITL 2 REPLICATION STRESS RESPONSE. JRNL REF NAT COMMUN V. 8 15847 2017 JRNL REFN ESSN 2041-1723 JRNL PMID 28621305 JRNL DOI 10.1038/NCOMMS15847 REMARK 2 REMARK 2 RESOLUTION. 2.45 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0103 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.45 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 73.29 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 30026 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.223 REMARK 3 R VALUE (WORKING SET) : 0.221 REMARK 3 FREE R VALUE : 0.264 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1605 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.45 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.51 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2178 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.96 REMARK 3 BIN R VALUE (WORKING SET) : 0.3050 REMARK 3 BIN FREE R VALUE SET COUNT : 135 REMARK 3 BIN FREE R VALUE : 0.3630 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6055 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 35 REMARK 3 SOLVENT ATOMS : 96 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 66.67 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.44000 REMARK 3 B22 (A**2) : 2.44000 REMARK 3 B33 (A**2) : -7.92000 REMARK 3 B12 (A**2) : 1.22000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.645 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.303 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.280 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 25.410 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.940 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.925 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6346 ; 0.011 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 6159 ; 0.005 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8605 ; 1.420 ; 1.987 REMARK 3 BOND ANGLES OTHERS (DEGREES): 14257 ; 0.995 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 830 ; 8.362 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 276 ;46.319 ;25.580 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1196 ;18.096 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 31 ;20.167 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1021 ; 0.088 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 7129 ; 0.012 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1312 ; 0.008 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3198 ; 3.491 ; 2.561 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 3197 ; 3.489 ; 2.559 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3996 ; 5.711 ; 3.805 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 3997 ; 5.712 ; 3.807 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3148 ; 3.952 ; 3.049 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 3121 ; 3.627 ; 2.994 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 4543 ; 5.944 ; 4.305 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 6509 ;10.599 ;19.294 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 6492 ;10.529 ;19.187 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 4 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 1 255 C 1 255 29742 0.07 0.05 REMARK 3 2 A 1 255 E 1 255 29810 0.09 0.05 REMARK 3 3 B 1069 1079 D 1069 1079 974 0.17 0.05 REMARK 3 4 C 1 255 E 1 255 29486 0.09 0.05 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 255 REMARK 3 RESIDUE RANGE : B 1069 B 1079 REMARK 3 ORIGIN FOR THE GROUP (A): -21.2440 -18.8240 19.6320 REMARK 3 T TENSOR REMARK 3 T11: 0.2897 T22: 0.1452 REMARK 3 T33: 0.8985 T12: 0.0551 REMARK 3 T13: 0.0513 T23: 0.0648 REMARK 3 L TENSOR REMARK 3 L11: 1.7665 L22: 1.0243 REMARK 3 L33: 0.1834 L12: 0.6758 REMARK 3 L13: -0.3110 L23: -0.2299 REMARK 3 S TENSOR REMARK 3 S11: -0.0117 S12: 0.0426 S13: -0.2412 REMARK 3 S21: 0.0313 S22: -0.0644 S23: -0.1170 REMARK 3 S31: 0.0190 S32: 0.0888 S33: 0.0760 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 1 C 255 REMARK 3 RESIDUE RANGE : D 1069 D 1079 REMARK 3 ORIGIN FOR THE GROUP (A): -58.4330 5.7510 15.3680 REMARK 3 T TENSOR REMARK 3 T11: 0.2218 T22: 0.2457 REMARK 3 T33: 0.8632 T12: 0.0445 REMARK 3 T13: 0.0621 T23: 0.0437 REMARK 3 L TENSOR REMARK 3 L11: 0.8417 L22: 2.4147 REMARK 3 L33: 0.0239 L12: 0.0177 REMARK 3 L13: -0.0861 L23: 0.0479 REMARK 3 S TENSOR REMARK 3 S11: -0.0112 S12: 0.0111 S13: 0.0295 REMARK 3 S21: 0.0398 S22: 0.0987 S23: 0.2484 REMARK 3 S31: 0.0265 S32: 0.0131 S33: -0.0875 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : E 1 E 256 REMARK 3 RESIDUE RANGE : F 1069 F 1078 REMARK 3 ORIGIN FOR THE GROUP (A): -18.6770 25.5750 16.8140 REMARK 3 T TENSOR REMARK 3 T11: 0.1007 T22: 0.4439 REMARK 3 T33: 0.8696 T12: -0.1084 REMARK 3 T13: 0.0972 T23: 0.0111 REMARK 3 L TENSOR REMARK 3 L11: 2.3587 L22: 1.3842 REMARK 3 L33: 0.4022 L12: -0.6080 REMARK 3 L13: 0.7009 L23: -0.6472 REMARK 3 S TENSOR REMARK 3 S11: 0.3931 S12: -0.2362 S13: -0.0279 REMARK 3 S21: -0.0929 S22: -0.3199 S23: -0.0837 REMARK 3 S31: 0.1062 S32: 0.0407 S33: -0.0732 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5MLW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 08-DEC-16. REMARK 100 THE DEPOSITION ID IS D_1200002662. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-DEC-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.2822 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : XIA2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31686 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.450 REMARK 200 RESOLUTION RANGE LOW (A) : 73.290 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 11.20 REMARK 200 R MERGE (I) : 0.10400 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 15.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.45 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.55 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 9.70 REMARK 200 R MERGE FOR SHELL (I) : 1.29700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1VYM REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.67 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM LITHIUM SULFATE + 30% (W/V) REMARK 280 POLYVINYLPYRROLIDONE + 100 MM HEPES PH 7.0, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 67.25667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 134.51333 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 134.51333 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 67.25667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASN A 187 REMARK 465 VAL A 188 REMARK 465 GLU A 256 REMARK 465 ASP A 257 REMARK 465 GLU A 258 REMARK 465 GLU A 259 REMARK 465 GLY A 260 REMARK 465 SER A 261 REMARK 465 SER C 186 REMARK 465 ASN C 187 REMARK 465 VAL C 188 REMARK 465 ASP C 189 REMARK 465 LYS C 190 REMARK 465 GLU C 191 REMARK 465 GLU C 192 REMARK 465 GLU C 256 REMARK 465 ASP C 257 REMARK 465 GLU C 258 REMARK 465 GLU C 259 REMARK 465 GLY C 260 REMARK 465 SER C 261 REMARK 465 LYS E 190 REMARK 465 GLU E 191 REMARK 465 GLU E 192 REMARK 465 ASP E 257 REMARK 465 GLU E 258 REMARK 465 GLU E 259 REMARK 465 GLY E 260 REMARK 465 SER E 261 REMARK 465 LYS F 1079 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU C 3 NH1 ARG C 91 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 108 -12.93 78.75 REMARK 500 ASP A 122 47.26 -98.73 REMARK 500 ALA A 163 -160.01 -106.72 REMARK 500 MET A 244 -46.73 -146.75 REMARK 500 GLN C 108 -13.61 79.76 REMARK 500 ASP C 122 48.00 -98.18 REMARK 500 ALA C 163 -159.87 -106.41 REMARK 500 MET C 244 -45.86 -146.60 REMARK 500 ASP D1071 115.89 -163.87 REMARK 500 ARG D1074 -25.67 -39.56 REMARK 500 GLN E 8 76.17 -100.76 REMARK 500 GLN E 108 -13.23 79.83 REMARK 500 ASP E 122 47.62 -98.73 REMARK 500 GLU E 124 99.44 -69.96 REMARK 500 ALA E 163 -159.91 -108.53 REMARK 500 ASN E 187 77.08 -110.72 REMARK 500 MET E 244 -49.61 -142.30 REMARK 500 ASP F1071 119.89 -166.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASN C 95 ALA C 96 -130.11 REMARK 500 ALA E 96 ASP E 97 148.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 C 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 C 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 E 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 E 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 E 303 DBREF 5MLW A 1 261 UNP P12004 PCNA_HUMAN 1 261 DBREF 5MLW B 1069 1079 PDB 5MLW 5MLW 1069 1079 DBREF 5MLW C 1 261 UNP P12004 PCNA_HUMAN 1 261 DBREF 5MLW D 1069 1079 PDB 5MLW 5MLW 1069 1079 DBREF 5MLW E 1 261 UNP P12004 PCNA_HUMAN 1 261 DBREF 5MLW F 1069 1079 PDB 5MLW 5MLW 1069 1079 SEQRES 1 A 261 MET PHE GLU ALA ARG LEU VAL GLN GLY SER ILE LEU LYS SEQRES 2 A 261 LYS VAL LEU GLU ALA LEU LYS ASP LEU ILE ASN GLU ALA SEQRES 3 A 261 CYS TRP ASP ILE SER SER SER GLY VAL ASN LEU GLN SER SEQRES 4 A 261 MET ASP SER SER HIS VAL SER LEU VAL GLN LEU THR LEU SEQRES 5 A 261 ARG SER GLU GLY PHE ASP THR TYR ARG CYS ASP ARG ASN SEQRES 6 A 261 LEU ALA MET GLY VAL ASN LEU THR SER MET SER LYS ILE SEQRES 7 A 261 LEU LYS CYS ALA GLY ASN GLU ASP ILE ILE THR LEU ARG SEQRES 8 A 261 ALA GLU ASP ASN ALA ASP THR LEU ALA LEU VAL PHE GLU SEQRES 9 A 261 ALA PRO ASN GLN GLU LYS VAL SER ASP TYR GLU MET LYS SEQRES 10 A 261 LEU MET ASP LEU ASP VAL GLU GLN LEU GLY ILE PRO GLU SEQRES 11 A 261 GLN GLU TYR SER CYS VAL VAL LYS MET PRO SER GLY GLU SEQRES 12 A 261 PHE ALA ARG ILE CYS ARG ASP LEU SER HIS ILE GLY ASP SEQRES 13 A 261 ALA VAL VAL ILE SER CYS ALA LYS ASP GLY VAL LYS PHE SEQRES 14 A 261 SER ALA SER GLY GLU LEU GLY ASN GLY ASN ILE LYS LEU SEQRES 15 A 261 SER GLN THR SER ASN VAL ASP LYS GLU GLU GLU ALA VAL SEQRES 16 A 261 THR ILE GLU MET ASN GLU PRO VAL GLN LEU THR PHE ALA SEQRES 17 A 261 LEU ARG TYR LEU ASN PHE PHE THR LYS ALA THR PRO LEU SEQRES 18 A 261 SER SER THR VAL THR LEU SER MET SER ALA ASP VAL PRO SEQRES 19 A 261 LEU VAL VAL GLU TYR LYS ILE ALA ASP MET GLY HIS LEU SEQRES 20 A 261 LYS TYR TYR LEU ALA PRO LYS ILE GLU ASP GLU GLU GLY SEQRES 21 A 261 SER SEQRES 1 B 11 GLY SER ASP ILE THR ARG PHE LEU VAL LYS LYS SEQRES 1 C 261 MET PHE GLU ALA ARG LEU VAL GLN GLY SER ILE LEU LYS SEQRES 2 C 261 LYS VAL LEU GLU ALA LEU LYS ASP LEU ILE ASN GLU ALA SEQRES 3 C 261 CYS TRP ASP ILE SER SER SER GLY VAL ASN LEU GLN SER SEQRES 4 C 261 MET ASP SER SER HIS VAL SER LEU VAL GLN LEU THR LEU SEQRES 5 C 261 ARG SER GLU GLY PHE ASP THR TYR ARG CYS ASP ARG ASN SEQRES 6 C 261 LEU ALA MET GLY VAL ASN LEU THR SER MET SER LYS ILE SEQRES 7 C 261 LEU LYS CYS ALA GLY ASN GLU ASP ILE ILE THR LEU ARG SEQRES 8 C 261 ALA GLU ASP ASN ALA ASP THR LEU ALA LEU VAL PHE GLU SEQRES 9 C 261 ALA PRO ASN GLN GLU LYS VAL SER ASP TYR GLU MET LYS SEQRES 10 C 261 LEU MET ASP LEU ASP VAL GLU GLN LEU GLY ILE PRO GLU SEQRES 11 C 261 GLN GLU TYR SER CYS VAL VAL LYS MET PRO SER GLY GLU SEQRES 12 C 261 PHE ALA ARG ILE CYS ARG ASP LEU SER HIS ILE GLY ASP SEQRES 13 C 261 ALA VAL VAL ILE SER CYS ALA LYS ASP GLY VAL LYS PHE SEQRES 14 C 261 SER ALA SER GLY GLU LEU GLY ASN GLY ASN ILE LYS LEU SEQRES 15 C 261 SER GLN THR SER ASN VAL ASP LYS GLU GLU GLU ALA VAL SEQRES 16 C 261 THR ILE GLU MET ASN GLU PRO VAL GLN LEU THR PHE ALA SEQRES 17 C 261 LEU ARG TYR LEU ASN PHE PHE THR LYS ALA THR PRO LEU SEQRES 18 C 261 SER SER THR VAL THR LEU SER MET SER ALA ASP VAL PRO SEQRES 19 C 261 LEU VAL VAL GLU TYR LYS ILE ALA ASP MET GLY HIS LEU SEQRES 20 C 261 LYS TYR TYR LEU ALA PRO LYS ILE GLU ASP GLU GLU GLY SEQRES 21 C 261 SER SEQRES 1 D 11 GLY SER ASP ILE THR ARG PHE LEU VAL LYS LYS SEQRES 1 E 261 MET PHE GLU ALA ARG LEU VAL GLN GLY SER ILE LEU LYS SEQRES 2 E 261 LYS VAL LEU GLU ALA LEU LYS ASP LEU ILE ASN GLU ALA SEQRES 3 E 261 CYS TRP ASP ILE SER SER SER GLY VAL ASN LEU GLN SER SEQRES 4 E 261 MET ASP SER SER HIS VAL SER LEU VAL GLN LEU THR LEU SEQRES 5 E 261 ARG SER GLU GLY PHE ASP THR TYR ARG CYS ASP ARG ASN SEQRES 6 E 261 LEU ALA MET GLY VAL ASN LEU THR SER MET SER LYS ILE SEQRES 7 E 261 LEU LYS CYS ALA GLY ASN GLU ASP ILE ILE THR LEU ARG SEQRES 8 E 261 ALA GLU ASP ASN ALA ASP THR LEU ALA LEU VAL PHE GLU SEQRES 9 E 261 ALA PRO ASN GLN GLU LYS VAL SER ASP TYR GLU MET LYS SEQRES 10 E 261 LEU MET ASP LEU ASP VAL GLU GLN LEU GLY ILE PRO GLU SEQRES 11 E 261 GLN GLU TYR SER CYS VAL VAL LYS MET PRO SER GLY GLU SEQRES 12 E 261 PHE ALA ARG ILE CYS ARG ASP LEU SER HIS ILE GLY ASP SEQRES 13 E 261 ALA VAL VAL ILE SER CYS ALA LYS ASP GLY VAL LYS PHE SEQRES 14 E 261 SER ALA SER GLY GLU LEU GLY ASN GLY ASN ILE LYS LEU SEQRES 15 E 261 SER GLN THR SER ASN VAL ASP LYS GLU GLU GLU ALA VAL SEQRES 16 E 261 THR ILE GLU MET ASN GLU PRO VAL GLN LEU THR PHE ALA SEQRES 17 E 261 LEU ARG TYR LEU ASN PHE PHE THR LYS ALA THR PRO LEU SEQRES 18 E 261 SER SER THR VAL THR LEU SER MET SER ALA ASP VAL PRO SEQRES 19 E 261 LEU VAL VAL GLU TYR LYS ILE ALA ASP MET GLY HIS LEU SEQRES 20 E 261 LYS TYR TYR LEU ALA PRO LYS ILE GLU ASP GLU GLU GLY SEQRES 21 E 261 SER SEQRES 1 F 11 GLY SER ASP ILE THR ARG PHE LEU VAL LYS LYS HET SO4 A 301 5 HET SO4 A 302 5 HET SO4 C 301 5 HET SO4 C 302 5 HET SO4 E 301 5 HET SO4 E 302 5 HET SO4 E 303 5 HETNAM SO4 SULFATE ION FORMUL 7 SO4 7(O4 S 2-) FORMUL 14 HOH *96(H2 O) HELIX 1 AA1 GLY A 9 ASP A 21 1 13 HELIX 2 AA2 GLU A 55 PHE A 57 5 3 HELIX 3 AA3 LEU A 72 CYS A 81 1 10 HELIX 4 AA4 SER A 141 HIS A 153 1 13 HELIX 5 AA5 LEU A 209 THR A 216 1 8 HELIX 6 AA6 LYS A 217 SER A 222 5 6 HELIX 7 AA7 ILE B 1072 LEU B 1076 5 5 HELIX 8 AA8 GLY C 9 ASP C 21 1 13 HELIX 9 AA9 GLU C 55 PHE C 57 5 3 HELIX 10 AB1 LEU C 72 CYS C 81 1 10 HELIX 11 AB2 SER C 141 HIS C 153 1 13 HELIX 12 AB3 LEU C 209 THR C 216 1 8 HELIX 13 AB4 LYS C 217 SER C 222 5 6 HELIX 14 AB5 ILE D 1072 LEU D 1076 5 5 HELIX 15 AB6 GLY E 9 ASP E 21 1 13 HELIX 16 AB7 GLU E 55 PHE E 57 5 3 HELIX 17 AB8 LEU E 72 CYS E 81 1 10 HELIX 18 AB9 SER E 141 HIS E 153 1 13 HELIX 19 AC1 LEU E 209 THR E 216 1 8 HELIX 20 AC2 LYS E 217 SER E 222 5 6 HELIX 21 AC3 ILE F 1072 LEU F 1076 5 5 SHEET 1 AA1 9 THR A 59 CYS A 62 0 SHEET 2 AA1 9 PHE A 2 LEU A 6 -1 N GLU A 3 O ARG A 61 SHEET 3 AA1 9 ILE A 87 ALA A 92 -1 O ILE A 88 N LEU A 6 SHEET 4 AA1 9 THR A 98 GLU A 104 -1 O ALA A 100 N ARG A 91 SHEET 5 AA1 9 LYS A 110 LYS A 117 -1 O TYR A 114 N LEU A 101 SHEET 6 AA1 9 GLY C 176 SER C 183 -1 O ASN C 177 N GLU A 115 SHEET 7 AA1 9 GLY C 166 GLY C 173 -1 N PHE C 169 O ILE C 180 SHEET 8 AA1 9 ALA C 157 CYS C 162 -1 N VAL C 159 O SER C 170 SHEET 9 AA1 9 VAL C 203 ALA C 208 -1 O LEU C 205 N ILE C 160 SHEET 1 AA2 9 LEU A 66 ASN A 71 0 SHEET 2 AA2 9 GLU A 25 SER A 31 -1 N TRP A 28 O MET A 68 SHEET 3 AA2 9 GLY A 34 MET A 40 -1 O ASN A 36 N ASP A 29 SHEET 4 AA2 9 SER A 46 ARG A 53 -1 O VAL A 48 N SER A 39 SHEET 5 AA2 9 GLY A 245 LEU A 251 -1 O LYS A 248 N GLN A 49 SHEET 6 AA2 9 LEU A 235 ILE A 241 -1 N TYR A 239 O LEU A 247 SHEET 7 AA2 9 THR A 224 MET A 229 -1 N THR A 226 O GLU A 238 SHEET 8 AA2 9 CYS A 135 PRO A 140 -1 N CYS A 135 O MET A 229 SHEET 9 AA2 9 THR A 196 MET A 199 -1 O THR A 196 N LYS A 138 SHEET 1 AA3 9 VAL A 203 ALA A 208 0 SHEET 2 AA3 9 ALA A 157 CYS A 162 -1 N ILE A 160 O LEU A 205 SHEET 3 AA3 9 GLY A 166 GLY A 173 -1 O SER A 170 N VAL A 159 SHEET 4 AA3 9 GLY A 176 SER A 183 -1 O LEU A 182 N VAL A 167 SHEET 5 AA3 9 LYS E 110 LYS E 117 -1 O ASP E 113 N ASN A 179 SHEET 6 AA3 9 THR E 98 GLU E 104 -1 N LEU E 101 O TYR E 114 SHEET 7 AA3 9 ILE E 87 ALA E 92 -1 N ARG E 91 O ALA E 100 SHEET 8 AA3 9 PHE E 2 ARG E 5 -1 N ALA E 4 O LEU E 90 SHEET 9 AA3 9 THR E 59 CYS E 62 -1 O ARG E 61 N GLU E 3 SHEET 1 AA4 9 THR C 59 CYS C 62 0 SHEET 2 AA4 9 PHE C 2 LEU C 6 -1 N GLU C 3 O ARG C 61 SHEET 3 AA4 9 ILE C 87 ALA C 92 -1 O ILE C 88 N LEU C 6 SHEET 4 AA4 9 THR C 98 GLU C 104 -1 O ALA C 100 N ARG C 91 SHEET 5 AA4 9 LYS C 110 LYS C 117 -1 O TYR C 114 N LEU C 101 SHEET 6 AA4 9 GLY E 176 SER E 183 -1 O ASN E 177 N GLU C 115 SHEET 7 AA4 9 GLY E 166 GLY E 173 -1 N PHE E 169 O ILE E 180 SHEET 8 AA4 9 ALA E 157 CYS E 162 -1 N VAL E 159 O SER E 170 SHEET 9 AA4 9 VAL E 203 ALA E 208 -1 O LEU E 205 N ILE E 160 SHEET 1 AA5 9 LEU C 66 ASN C 71 0 SHEET 2 AA5 9 GLU C 25 ILE C 30 -1 N TRP C 28 O MET C 68 SHEET 3 AA5 9 GLY C 34 MET C 40 -1 O ASN C 36 N ASP C 29 SHEET 4 AA5 9 SER C 46 ARG C 53 -1 O VAL C 48 N SER C 39 SHEET 5 AA5 9 GLY C 245 LEU C 251 -1 O TYR C 250 N LEU C 47 SHEET 6 AA5 9 LEU C 235 ILE C 241 -1 N TYR C 239 O LEU C 247 SHEET 7 AA5 9 THR C 224 MET C 229 -1 N THR C 226 O GLU C 238 SHEET 8 AA5 9 CYS C 135 PRO C 140 -1 N CYS C 135 O MET C 229 SHEET 9 AA5 9 THR C 196 MET C 199 -1 O THR C 196 N LYS C 138 SHEET 1 AA6 9 LEU E 66 ASN E 71 0 SHEET 2 AA6 9 GLU E 25 SER E 31 -1 N TRP E 28 O MET E 68 SHEET 3 AA6 9 GLY E 34 MET E 40 -1 O ASN E 36 N ASP E 29 SHEET 4 AA6 9 SER E 46 ARG E 53 -1 O LEU E 50 N LEU E 37 SHEET 5 AA6 9 GLY E 245 LEU E 251 -1 O TYR E 250 N LEU E 47 SHEET 6 AA6 9 LEU E 235 ILE E 241 -1 N TYR E 239 O LEU E 247 SHEET 7 AA6 9 THR E 224 MET E 229 -1 N SER E 228 O VAL E 236 SHEET 8 AA6 9 CYS E 135 PRO E 140 -1 N CYS E 135 O MET E 229 SHEET 9 AA6 9 THR E 196 MET E 199 -1 O THR E 196 N LYS E 138 SITE 1 AC1 5 ARG A 53 GLU A 238 LYS A 240 GLY A 245 SITE 2 AC1 5 HIS A 246 SITE 1 AC2 5 ALA A 82 GLY A 83 ASN A 84 GLU A 85 SITE 2 AC2 5 ARG C 146 SITE 1 AC3 7 LYS A 190 GLU A 191 ARG C 53 LYS C 240 SITE 2 AC3 7 GLY C 245 HIS C 246 HOH C 413 SITE 1 AC4 4 ALA C 82 GLY C 83 ASN C 84 ARG E 146 SITE 1 AC5 4 ARG E 53 LYS E 240 GLY E 245 HIS E 246 SITE 1 AC6 3 ARG A 146 ASN E 84 HOH E 412 SITE 1 AC7 5 SER E 152 ASP E 156 LEU E 209 ARG E 210 SITE 2 AC7 5 HOH E 416 CRYST1 84.631 84.631 201.770 90.00 90.00 120.00 P 31 2 1 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011816 0.006822 0.000000 0.00000 SCALE2 0.000000 0.013644 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004956 0.00000